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Conserved domains on  [gi|505287555|ref|WP_015474657|]
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MULTISPECIES: flavodoxin [Lactobacillaceae]

Protein Classification

NADPH-dependent FMN reductase family protein( domain architecture ID 325)

NADPH-dependent FMN reductase family protein contains a flavodoxin-like fold, which is characterized by an open twisted/alpha beta structure consisting of five parallel beta-sheets connected by alpha-helices which surround the sheet

CATH:  3.40.50.360
Gene Ontology:  GO:0010181
SCOP:  3001217

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FMN_red super family cl00438
NADPH-dependent FMN reductase;
1-80 1.80e-13

NADPH-dependent FMN reductase;


The actual alignment was detected with superfamily member PRK06934:

Pssm-ID: 469770 [Multi-domain]  Cd Length: 221  Bit Score: 62.24  E-value: 1.80e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505287555   1 MKITKHELDERTFPKIMPITADIAGSNHIILAFPNWWNHLPRPIVTFMEQYQWQDKTIYPVCTHEGNRFGDSLNELSEIA 80
Cdd:PRK06934 105 LKYAEQEVKEGGRPEMREKIQNLADYDQIFIGYPIWWYKMPMVMYSFFEQHDFSGKTLIPFTTHGGSRFSDSLREIKRLQ 184
 
Name Accession Description Interval E-value
PRK06934 PRK06934
flavodoxin; Provisional
 1-80 1.80e-13

flavodoxin; Provisional


Pssm-ID: 180760 [Multi-domain]  Cd Length: 221  Bit Score: 62.24  E-value: 1.80e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505287555   1 MKITKHELDERTFPKIMPITADIAGSNHIILAFPNWWNHLPRPIVTFMEQYQWQDKTIYPVCTHEGNRFGDSLNELSEIA 80
Cdd:PRK06934 105 LKYAEQEVKEGGRPEMREKIQNLADYDQIFIGYPIWWYKMPMVMYSFFEQHDFSGKTLIPFTTHGGSRFSDSLREIKRLQ 184
FldA COG0716
Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: ...
 21-80 1.71e-11

Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440480 [Multi-domain]  Cd Length: 135  Bit Score: 55.29  E-value: 1.71e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505287555  21 ADIAGSNHIILAFPNWWNHLPRPIVTFMEQ--YQWQDKTIYPVCTHEGNRFGDSLNELSEIA 80
Cdd:COG0716   39 DDLEDYDLLILGTPTWAGELPDDWEDFLEElkEDLSGKKVALFGTGDSSGYGDALGELKELL 100
Flavodoxin_4 pfam12682
Flavodoxin; This is a family of flavodoxins. Flavodoxins are electron transfer proteins that ...
 29-71 3.35e-04

Flavodoxin; This is a family of flavodoxins. Flavodoxins are electron transfer proteins that carry a molecule of non-covalently bound FMN.


Pssm-ID: 403777  Cd Length: 155  Bit Score: 36.60  E-value: 3.35e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 505287555   29 IILAFPNWWNHLPRPIVTFMEQYQWQDKTIYPVCTHEGNRFGD 71
Cdd:pfam12682  77 LFVGFPVWWYIAPTIINTFLESYDFAGKIVVPFATSGGSGIGN 119
 
Name Accession Description Interval E-value
PRK06934 PRK06934
flavodoxin; Provisional
 1-80 1.80e-13

flavodoxin; Provisional


Pssm-ID: 180760 [Multi-domain]  Cd Length: 221  Bit Score: 62.24  E-value: 1.80e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505287555   1 MKITKHELDERTFPKIMPITADIAGSNHIILAFPNWWNHLPRPIVTFMEQYQWQDKTIYPVCTHEGNRFGDSLNELSEIA 80
Cdd:PRK06934 105 LKYAEQEVKEGGRPEMREKIQNLADYDQIFIGYPIWWYKMPMVMYSFFEQHDFSGKTLIPFTTHGGSRFSDSLREIKRLQ 184
PRK07116 PRK07116
flavodoxin; Provisional
 9-76 3.05e-13

flavodoxin; Provisional


Pssm-ID: 180850  Cd Length: 160  Bit Score: 60.46  E-value: 3.05e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 505287555   9 DERTFPKIMPITADIAGSNHIILAFPNWWNHLPRPIVTFMEQYQWQDKTIYPVCTHEGNRFGDSLNEL 76
Cdd:PRK07116  60 DKSSRPAIAKKIENIAEYDVIFLGFPIWWYVAPRIINTFLESYDFSGKTVIPFATSGGSGIGNAEKEL 127
FldA COG0716
Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: ...
 21-80 1.71e-11

Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440480 [Multi-domain]  Cd Length: 135  Bit Score: 55.29  E-value: 1.71e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505287555  21 ADIAGSNHIILAFPNWWNHLPRPIVTFMEQ--YQWQDKTIYPVCTHEGNRFGDSLNELSEIA 80
Cdd:COG0716   39 DDLEDYDLLILGTPTWAGELPDDWEDFLEElkEDLSGKKVALFGTGDSSGYGDALGELKELL 100
Flavodoxin_4 pfam12682
Flavodoxin; This is a family of flavodoxins. Flavodoxins are electron transfer proteins that ...
 29-71 3.35e-04

Flavodoxin; This is a family of flavodoxins. Flavodoxins are electron transfer proteins that carry a molecule of non-covalently bound FMN.


Pssm-ID: 403777  Cd Length: 155  Bit Score: 36.60  E-value: 3.35e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 505287555   29 IILAFPNWWNHLPRPIVTFMEQYQWQDKTIYPVCTHEGNRFGD 71
Cdd:pfam12682  77 LFVGFPVWWYIAPTIINTFLESYDFAGKIVVPFATSGGSGIGN 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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