NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|515981790|ref|WP_017412373|]
View 

MULTISPECIES: flagellar motor switch protein FliN [Aeromonas]

Protein Classification

flagellar motor switch protein FliN( domain architecture ID 11483490)

flagellar motor switch protein FliN is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
fliN PRK08983
flagellar motor switch protein FliN;
6-130 3.27e-72

flagellar motor switch protein FliN;


:

Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 211.53  E-value: 3.27e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515981790   6 EEDLMADAWAAALEEQVIAEAKPAPLEELTDD-APISAEERRKLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELD 84
Cdd:PRK08983   2 SDEDTADDWAAAMAEQALEEALAAELDELVDDsAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELD 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 515981790  85 RVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKKLK 130
Cdd:PRK08983  82 RVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK 127
 
Name Accession Description Interval E-value
fliN PRK08983
flagellar motor switch protein FliN;
6-130 3.27e-72

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 211.53  E-value: 3.27e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515981790   6 EEDLMADAWAAALEEQVIAEAKPAPLEELTDD-APISAEERRKLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELD 84
Cdd:PRK08983   2 SDEDTADDWAAAMAEQALEEALAAELDELVDDsAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELD 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 515981790  85 RVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKKLK 130
Cdd:PRK08983  82 RVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK 127
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 15-121 2.68e-32

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 112.02  E-value: 2.68e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515981790  15 AAALEEQVIAEAKPAPLEELtDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVL 94
Cdd:COG1886   67 EVGGLLLLGSDEEPAEFEPL-EDAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDIL 145

                         90       100
                 ....*....|....*....|....*..
gi 515981790  95 VNGTLIAHGEVVVVNDKFGIRLTDVIS 121
Cdd:COG1886  146 VNGRLIARGEVVVVDDRFGVRITEIVS 172
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 47-122 1.05e-31

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 107.30  E-value: 1.05e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515981790   47 KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQ 122
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDS 76
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 56-121 9.95e-21

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 78.92  E-value: 9.95e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515981790   56 VTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVIS 121
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
 
Name Accession Description Interval E-value
fliN PRK08983
flagellar motor switch protein FliN;
6-130 3.27e-72

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 211.53  E-value: 3.27e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515981790   6 EEDLMADAWAAALEEQVIAEAKPAPLEELTDD-APISAEERRKLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELD 84
Cdd:PRK08983   2 SDEDTADDWAAAMAEQALEEALAAELDELVDDsAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELD 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 515981790  85 RVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKKLK 130
Cdd:PRK08983  82 RVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK 127
fliN PRK05698
flagellar motor switch protein FliN;
6-130 2.86e-54

flagellar motor switch protein FliN;


Pssm-ID: 168189 [Multi-domain]  Cd Length: 155  Bit Score: 167.28  E-value: 2.86e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515981790   6 EEDLMADAWAAALEE-----------------QVIAEAKPAPLEELTDDAP---ISAEERRKLDTILDIPVTIAMEVGRS 65
Cdd:PRK05698  11 EDQALADEWAAALEEagdagqddidallgadaGAEPSGPRAPMEEFGSSPKpnePVSLEGPNLDVILDIPVSISMEVGST 90

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515981790  66 QISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKKLK 130
Cdd:PRK05698  91 DINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR 155
PRK08119 PRK08119
flagellar motor switch protein; Validated
 25-130 8.00e-39

flagellar motor switch protein; Validated


Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 133.83  E-value: 8.00e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515981790  25 EAKPAPLEELtDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGE 104
Cdd:PRK08119 278 NVQPAQFQSF-DPPPLATTEPRNLDLILDVPLQVTVELGRTKKSIKDILELGTGSIIELDKLAGEPVDILVNGKLIAKGE 356

                         90       100
                 ....*....|....*....|....*.
gi 515981790 105 VVVVNDKFGIRLTDVISQIERIKKLK 130
Cdd:PRK08119 357 VVVIDENFGVRITDIVSQSERIKSLK 382
fliN PRK07963
flagellar motor switch protein FliN; Validated
 5-129 3.21e-34

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 115.66  E-value: 3.21e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515981790   5 DEEDLMADAWAAALEEQVIAEAKPAP---LEELTDDAPISAEErrKLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVV 81
Cdd:PRK07963  10 DNNGAMDDLWAEALNEQKATSSKSAAdavFQQLGGGDVSGTLQ--DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVV 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 515981790  82 ELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKKL 129
Cdd:PRK07963  88 ALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 15-121 2.68e-32

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 112.02  E-value: 2.68e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515981790  15 AAALEEQVIAEAKPAPLEELtDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVL 94
Cdd:COG1886   67 EVGGLLLLGSDEEPAEFEPL-EDAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDIL 145

                         90       100
                 ....*....|....*....|....*..
gi 515981790  95 VNGTLIAHGEVVVVNDKFGIRLTDVIS 121
Cdd:COG1886  146 VNGRLIARGEVVVVDDRFGVRITEIVS 172
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 47-122 1.05e-31

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 107.30  E-value: 1.05e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515981790   47 KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQ 122
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDS 76
PRK08916 PRK08916
flagellar motor switch protein FliN;
28-120 1.18e-23

flagellar motor switch protein FliN;


Pssm-ID: 236350 [Multi-domain]  Cd Length: 116  Bit Score: 88.27  E-value: 1.18e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515981790  28 PAPLEELTDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 107
Cdd:PRK08916  19 PPEDDVGYNEEEQADRTAADLEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGSVLELDRKVGEAIDIYVNNRLVARGEVVL 98

                         90
                 ....*....|...
gi 515981790 108 VNDKFGIRLTDVI 120
Cdd:PRK08916  99 VEDRLGVTMTEII 111
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 56-121 9.95e-21

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 78.92  E-value: 9.95e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515981790   56 VTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVIS 121
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
PRK08432 PRK08432
flagellar motor switch protein FliY; Validated
 19-130 4.65e-17

flagellar motor switch protein FliY; Validated


Pssm-ID: 236264 [Multi-domain]  Cd Length: 283  Bit Score: 74.66  E-value: 4.65e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515981790  19 EEQVIAEAKPAPLEELTDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGT 98
Cdd:PRK08432 171 KEEGEETTDSASEEIKTHKASLSNEEIKNINMILDVKLPVRVRIGQKKMLLKDVLSMDIGSVVELNQLANDPLEILVDDK 250

                         90       100       110
                 ....*....|....*....|....*....|..
gi 515981790  99 LIAHGEVVVVNDKFGIRLTDVISQIERIKKLK 130
Cdd:PRK08432 251 VIAKGEVVIVDGNFGIQITEIGTKKERLEQLK 282
PRK06782 PRK06782
flagellar motor switch protein; Reviewed
 10-120 9.88e-15

flagellar motor switch protein; Reviewed


Pssm-ID: 235861 [Multi-domain]  Cd Length: 528  Bit Score: 69.09  E-value: 9.88e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515981790  10 MADAWAAALEEQVIAEAKPAPLEELTDDAPISAEERRKLDT--ILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVA 87
Cdd:PRK06782 416 MVKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDTsiLQDVPMNVKVVFGSTKKTIQDILSLQENEVVVLDEDI 495

                         90       100       110
                 ....*....|....*....|....*....|...
gi 515981790  88 GEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVI 120
Cdd:PRK06782 496 DEPIRIYVNGVLVAYGELVNVDGFFGVKVTKSL 528
PRK08433 PRK08433
flagellar motor switch protein FliN;
49-120 9.69e-13

flagellar motor switch protein FliN;


Pssm-ID: 181423 [Multi-domain]  Cd Length: 111  Bit Score: 60.15  E-value: 9.69e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 515981790  49 DTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVI 120
Cdd:PRK08433  27 ENLLDIEVDFSAELGTTQISLLEILKFEKGSVIDLEKPAGESVELYINGRIIGKGEVMVYEKNLAIRINEIL 98
FliM COG1868
Flagellar motor switch protein FliM [Cell motility];
36-124 1.01e-12

Flagellar motor switch protein FliM [Cell motility];


Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 63.26  E-value: 1.01e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515981790  36 DDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGI 114
Cdd:COG1868  236 DRKERDERWRERLrEELEEAEVELSAELGETEITLRELLNLKVGDVIPLDKKVDDPLTVYVGGVPKFEGKPGVSNGRLAV 315

                         90
                 ....*....|
gi 515981790 115 RLTDVISQIE 124
Cdd:COG1868  316 KITEIIEEEE 325
SpaO_YscQ TIGR02551
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ...
 53-117 1.55e-12

type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274196 [Multi-domain]  Cd Length: 298  Bit Score: 62.43  E-value: 1.55e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515981790   53 DIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLT 117
Cdd:TIGR02551 232 QLPVTLEFELGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGGRLGVRIL 296
PRK06933 PRK06933
YscQ/HrcQ family type III secretion apparatus protein;
53-117 7.14e-10

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 235891 [Multi-domain]  Cd Length: 308  Bit Score: 55.13  E-value: 7.14e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515981790  53 DIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLT 117
Cdd:PRK06933 236 QLPVQVSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRVE 300
fliM PRK06666
flagellar motor switch protein FliM; Validated
 51-128 8.50e-07

flagellar motor switch protein FliM; Validated


Pssm-ID: 235849 [Multi-domain]  Cd Length: 337  Bit Score: 46.37  E-value: 8.50e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515981790  51 ILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 128
Cdd:PRK06666 255 VQQAEVELVAELGEIKLTLSEILNLKVGDVIPLEKPADDPLIVYVDGKPKFLCQYGKSNGRKALQIEELIERELNEKN 332
PRK06788 PRK06788
flagellar motor switch protein; Validated
 25-128 1.27e-06

flagellar motor switch protein; Validated


Pssm-ID: 180693 [Multi-domain]  Cd Length: 119  Bit Score: 44.10  E-value: 1.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515981790  25 EAKPAPLEELTDDAPiSAEERRK--LDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAH 102
Cdd:PRK06788   4 EVSPVSLMELEDFAG-KRNEASKahIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVGI 82

                         90       100
                 ....*....|....*....|....*.
gi 515981790 103 GEVVVVNDKFGIrltdVISQIERIKK 128
Cdd:PRK06788  83 GEAIVMDEKFGI----IISEIEADKK 104
PRK05933 PRK05933
type III secretion system protein; Validated
 25-119 6.41e-06

type III secretion system protein; Validated


Pssm-ID: 180315 [Multi-domain]  Cd Length: 372  Bit Score: 43.68  E-value: 6.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515981790  25 EAKPAPLEELTDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRV-AGEPLDVLVNGTLIAHG 103
Cdd:PRK05933 277 EFKITSYPNLQPEDPPEEPSEGGPAAPLPGATKLVAEVARYSLSVGEFLKLGPGSILQFDGVhPTLGVDIILNGAKVGRG 356

                         90
                 ....*....|....*.
gi 515981790 104 EVVVVNDKFGIRLTDV 119
Cdd:PRK05933 357 EIIALGDVLGIRVLEV 372
PRK08158 PRK08158
YscQ/HrcQ family type III secretion apparatus protein;
42-116 9.30e-06

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181259 [Multi-domain]  Cd Length: 303  Bit Score: 43.32  E-value: 9.30e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515981790  42 AEERRKLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRL 116
Cdd:PRK08158 218 TETAETLPGLNQLPVKLEFVLYRKNVTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMDDTLGVEI 292
PRK06789 PRK06789
flagellar motor switch protein; Validated
 53-119 4.36e-05

flagellar motor switch protein; Validated


Pssm-ID: 180694 [Multi-domain]  Cd Length: 74  Bit Score: 39.08  E-value: 4.36e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515981790  53 DIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDV 119
Cdd:PRK06789   6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGKMYVEIVEL 72
PRK06033 PRK06033
flagellar motor switch protein FliN;
50-117 7.72e-05

flagellar motor switch protein FliN;


Pssm-ID: 180359 [Multi-domain]  Cd Length: 83  Bit Score: 38.59  E-value: 7.72e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515981790  50 TILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLT 117
Cdd:PRK06033   3 TLDAVSVELMVVLGRSSMPIHQVLRMGRGAVIPLDATEADEVWILANNHPIARGEVLIDRNRIAVEVT 70
PRK08035 PRK08035
YscQ/HrcQ family type III secretion apparatus protein;
34-117 2.24e-04

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181204 [Multi-domain]  Cd Length: 323  Bit Score: 39.41  E-value: 2.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515981790  34 LTDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELD-RVAGEpLDVLVNGTLIAHGEVVVVNDKF 112
Cdd:PRK08035 231 LASGSPMSKSPGTSSVELEQLPQQVVMEIGRLSLPIGQLRQLAVGDVLPVGgCFYPE-VTIRLNGRIIGQGELLACDNEL 309


                 ....*
gi 515981790 113 GIRLT 117
Cdd:PRK08035 310 MVRIT 314
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH