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Conserved domains on  [gi|518734970|ref|WP_019894692|]
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MULTISPECIES: 50S ribosomal protein L33 [Hydrogenovibrio]

Protein Classification

50S ribosomal protein L33( domain architecture ID 10011480)

50S ribosomal protein L33 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0005840|GO:0006412|GO:0003735
PubMed:  24524803|11733066

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-48 5.71e-18

50S ribosomal protein L33; Validated


:

Pssm-ID: 179075  Cd Length: 53  Bit Score: 68.30  E-value: 5.71e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 518734970  1 MRDKIKLKSTES-AYFYTTDKNKRNMPGKFEIKKYDPFLRKHVIFKEAK 48
Cdd:PRK00595  5 MRVKIKLESTEGtGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-48 5.71e-18

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 68.30  E-value: 5.71e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 518734970  1 MRDKIKLKSTES-AYFYTTDKNKRNMPGKFEIKKYDPFLRKHVIFKEAK 48
Cdd:PRK00595  5 MRVKIKLESTEGtGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-48 5.70e-17

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 65.95  E-value: 5.70e-17
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 518734970  1 MRDKIKLKSTE-SAYFYTTDKNKRNMPGKFEIKKYDPFLRKHVIFKEAK 48
Cdd:COG0267   4 MREKITLACTEcKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
4-48 2.66e-13

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 56.67  E-value: 2.66e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 518734970   4 KIKLKSTES-AYFYTTDKNKRNMPGKFEIKKYDPFLRKHVIFKEAK 48
Cdd:pfam00471  1 KITLACTECkGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-48 1.04e-11

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 52.84  E-value: 1.04e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 518734970   2 RDKIKLKSTE-SAYFYTTDKNKRNMPGKFEIKKYDPFLRKHVIFKEAK 48
Cdd:TIGR01023  7 RELIRLVCTAcTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-48 5.71e-18

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 68.30  E-value: 5.71e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 518734970  1 MRDKIKLKSTES-AYFYTTDKNKRNMPGKFEIKKYDPFLRKHVIFKEAK 48
Cdd:PRK00595  5 MRVKIKLESTEGtGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-48 5.70e-17

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 65.95  E-value: 5.70e-17
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 518734970  1 MRDKIKLKSTE-SAYFYTTDKNKRNMPGKFEIKKYDPFLRKHVIFKEAK 48
Cdd:COG0267   4 MREKITLACTEcKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
4-48 2.66e-13

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 56.67  E-value: 2.66e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 518734970   4 KIKLKSTES-AYFYTTDKNKRNMPGKFEIKKYDPFLRKHVIFKEAK 48
Cdd:pfam00471  1 KITLACTECkGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-48 1.04e-11

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 52.84  E-value: 1.04e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 518734970   2 RDKIKLKSTE-SAYFYTTDKNKRNMPGKFEIKKYDPFLRKHVIFKEAK 48
Cdd:TIGR01023  7 RELIRLVCTAcTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
rpl33 CHL00104
ribosomal protein L33
 16-48 1.27e-07

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 42.65  E-value: 1.27e-07
                        10        20        30
                ....*....|....*....|....*....|...
gi 518734970 16 YTTDKNKRNMPGKFEIKKYDPFLRKHVIFKEAK 48
Cdd:CHL00104 33 YITQKNRHNTPNRLELKKFCPYCYKHTIHKEIK 65
rpmG PRK00504
50S ribosomal protein L33; Validated
 1-48 4.74e-07

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 40.67  E-value: 4.74e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 518734970  1 MRDKIKLKSTE-SAYFYTTDKNKRNMPGKFEIKKYDPFLRKHVIFKEAK 48
Cdd:PRK00504  2 MRKKITLACTEcKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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