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Conserved domains on  [gi|521990627|ref|WP_020501898|]
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nitrate- and nitrite sensing domain-containing protein [Sciscionella marina]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KdpD COG2205
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
427-619 1.18e-21

K+-sensing histidine kinase KdpD [Signal transduction mechanisms];


:

Pssm-ID: 441807 [Multi-domain]  Cd Length: 239  Bit Score: 94.97  E-value: 1.18e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  427 IEQLERDEE--DPDHLGTLFALDHLATRMRRNNENLMVLSGAEPNRASAQ-QPVSLEDLLRAAVSEI-----EQYRRVVL 498
Cdd:COG2205    38 AELLLDEEDlsPEERRELLEIIRESAERLLRLIEDLLDLSRLESGKLSLElEPVDLAELLEEAVEELrplaeEKGIRLEL 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  499 APPPAATVLGYTAGDLVRLVAELLDNATAFSAPDTTVTVSTSlATDDSVLIEVSDAGIGMRPEELAAANERLAAAEAEEV 578
Cdd:COG2205   118 DLPPELPLVYADPELLEQVLANLLDNAIKYSPPGGTITISAR-REGDGVRISVSDNGPGIPEEELERIFERFYRGDNSRG 196

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 521990627  579 PASRRMGLFVVGRLAHRQGVHVALRAGEESGLLAGIRIPRT 619
Cdd:COG2205   197 EGGTGLGLAIVKRIVEAHGGTIWVESEPGGGTTFTVTLPLA 237
NIT pfam08376
Nitrate and nitrite sensing; The nitrate- and nitrite sensing domain (NIT) is found in ...
 71-247 7.32e-16

Nitrate and nitrite sensing; The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.


:

Pssm-ID: 462453 [Multi-domain]  Cd Length: 227  Bit Score: 77.92  E-value: 7.32e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627    71 ITAVQVERRAAAG---GPRGQAP--------RTVDDAIGALRSSVADTELPDGpAKDAWQRTDKGLAALGTIRSSAARG- 138
Cdd:pfam08376    1 VHALQKERGLSAGylaSGGGGRFaaelaaqrAATDAALAALRAALAELALPAR-LADRLAALLRALDQLPALRRQVDAGa 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627   139 --GGAGITEYTGLIDSLLGFERAVAGASRDGGLTTRATSVTSLDEAREELSDQEAVLFSGIARGQLTQPESVTVRDAGVR 216
Cdd:pfam08376   80 lsALEALAAYTELIAALLDLVDELAAGSPDPELARQLRALAALLRAKEAAGQERALLAAALAAGRFTAAEYRRFLSLVAA 159

                          170       180       190
                   ....*....|....*....|....*....|.
gi 521990627   217 MDAALERFRAVGTESDVAKLNANLKKTDLDR 247
Cdd:pfam08376  160 QRAALAEFRAAATPEQRALYDATVTGPAVAA 190
PBP1 super family cl34930
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 442-960 1.73e-07

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


The actual alignment was detected with superfamily member COG5180:

Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 55.07  E-value: 1.73e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  442 TLFALDHLATRMRRNNENLMVLSGAEPNRASaQQPVSLEDLLRAAVSEIEQYRRVVLAPPPAATVLGYTAGDLVRLVAEL 521
Cdd:COG5180     5 TILEIRLLATVPIPPNAARPVLSPELWAAAN-NDAVSQGDRSALASSPTRPYARKIFEPLDIKLALGKPQLPSVAEPEAY 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  522 LDNATAFSAPDTTVTVSTSLATDDSVLIEVSDAGIGMRPEELAAANERLAAAEAEEVPASRRMGLFVVGRLAHRQGVHVA 601
Cdd:COG5180    84 LDPAPPKSSPDTPEEQLGAPAGDLLVLPAAKTPELAAGALPAPAAAAALPKAKVTREATSASAGVALAAALLQRSDPILA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  602 LRAGEESG---------LLAGIRIPR---------TLLAGVAVPDGGLGAEHTRSAGRTRADTDDTVETVLPRPAKPYGG 663
Cdd:COG5180   164 KDPDGDSAstlpppaekLDKVLTEPRdalkdspekLDRPKVEVKDEAQEEPPDLTGGADHPRPEAASSPKVDPPSTSEAR 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  664 REPATPPRRPRTEPPPRAKQPPAPEPSEQAPAPQAAGASANGLPRRTPKQPPERTPIFDSMLSVWFSDPgvAADPIATPA 743
Cdd:COG5180   244 SRPATVDAQPEMRPPADAKERRRAAIGDTPAAEPPGLPVLEAGSEPQSDAPEAETARPIDVKGVASAPP--ATRPVRPPG 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  744 GAAAPDTEEPEQATRQAADETPTDHDA----AVLGGSETERWRFAADAGWQAVEEVAEVRQDTFTEAGLPKRTPRARLLP 819
Cdd:COG5180   322 GARDPGTPRPGQPTERPAGVPEAASDAgqppSAYPPAEEAVPGKPLEQGAPRPGSSGGDGAPFQPPNGAPQPGLGRRGAP 401

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  820 GSVPDRTGTTEGTQDTEVTERAEP-RPATQGAKHRSADSVRSRLASFQRGLR----QGRHSVGDEQPPVQRASADTELFT 894
Cdd:COG5180   402 GPPMGAGDLVQAALDGGGRETASLgGAAGGAGQGPKADFVPGDAESVSGPAGladqAGAAASTAMADFVAPVTDATPVDV 481

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 521990627  895 PEQ--VAPQPTEDTTSSWAFDPDGEQSPNgtvtAAPGGTDAESFTEAGLPRRRPKAQLVPGSQTPNGR 960
Cdd:COG5180   482 ADVlgVRPDAILGGNVAPASGLDAETRII----EAEGAPATEDFVAAELSELREAAEEKTGDAINAEV 545
 
Name Accession Description Interval E-value
KdpD COG2205
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
427-619 1.18e-21

K+-sensing histidine kinase KdpD [Signal transduction mechanisms];


Pssm-ID: 441807 [Multi-domain]  Cd Length: 239  Bit Score: 94.97  E-value: 1.18e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  427 IEQLERDEE--DPDHLGTLFALDHLATRMRRNNENLMVLSGAEPNRASAQ-QPVSLEDLLRAAVSEI-----EQYRRVVL 498
Cdd:COG2205    38 AELLLDEEDlsPEERRELLEIIRESAERLLRLIEDLLDLSRLESGKLSLElEPVDLAELLEEAVEELrplaeEKGIRLEL 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  499 APPPAATVLGYTAGDLVRLVAELLDNATAFSAPDTTVTVSTSlATDDSVLIEVSDAGIGMRPEELAAANERLAAAEAEEV 578
Cdd:COG2205   118 DLPPELPLVYADPELLEQVLANLLDNAIKYSPPGGTITISAR-REGDGVRISVSDNGPGIPEEELERIFERFYRGDNSRG 196

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 521990627  579 PASRRMGLFVVGRLAHRQGVHVALRAGEESGLLAGIRIPRT 619
Cdd:COG2205   197 EGGTGLGLAIVKRIVEAHGGTIWVESEPGGGTTFTVTLPLA 237
NIT pfam08376
Nitrate and nitrite sensing; The nitrate- and nitrite sensing domain (NIT) is found in ...
 71-247 7.32e-16

Nitrate and nitrite sensing; The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.


Pssm-ID: 462453 [Multi-domain]  Cd Length: 227  Bit Score: 77.92  E-value: 7.32e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627    71 ITAVQVERRAAAG---GPRGQAP--------RTVDDAIGALRSSVADTELPDGpAKDAWQRTDKGLAALGTIRSSAARG- 138
Cdd:pfam08376    1 VHALQKERGLSAGylaSGGGGRFaaelaaqrAATDAALAALRAALAELALPAR-LADRLAALLRALDQLPALRRQVDAGa 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627   139 --GGAGITEYTGLIDSLLGFERAVAGASRDGGLTTRATSVTSLDEAREELSDQEAVLFSGIARGQLTQPESVTVRDAGVR 216
Cdd:pfam08376   80 lsALEALAAYTELIAALLDLVDELAAGSPDPELARQLRALAALLRAKEAAGQERALLAAALAAGRFTAAEYRRFLSLVAA 159

                          170       180       190
                   ....*....|....*....|....*....|.
gi 521990627   217 MDAALERFRAVGTESDVAKLNANLKKTDLDR 247
Cdd:pfam08376  160 QRAALAEFRAAATPEQRALYDATVTGPAVAA 190
HATPase_c smart00387
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
 514-619 1.22e-10

Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.


Pssm-ID: 214643 [Multi-domain]  Cd Length: 111  Bit Score: 59.58  E-value: 1.22e-10
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627    514 LVRLVAELLDNATAFSAPDTTVTVSTSlATDDSVLIEVSDAGIGMRPEELAAANERLAAAEAEEVPASRR-MGLFVVGRL 592
Cdd:smart00387    6 LRQVLSNLLDNAIKYTPEGGRITVTLE-RDGDHVEITVEDNGPGIPPEDLEKIFEPFFRTDKRSRKIGGTgLGLSIVKKL 84

                            90       100
                    ....*....|....*....|....*..
gi 521990627    593 AHRQGVHVALRAGEESGLLAGIRIPRT 619
Cdd:smart00387   85 VELHGGEISVESEPGGGTTFTITLPLE 111
HATPase_c pfam02518
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ...
 513-619 5.15e-10

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 460579 [Multi-domain]  Cd Length: 109  Bit Score: 57.76  E-value: 5.15e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627   513 DLVRLVAELLDNATAFSAPDTTVTVStsLATDDSVLIEVSDAGIGMrPEELAAANERLAAAEAEEVPASRRMGLFVVGRL 592
Cdd:pfam02518    5 RLRQVLSNLLDNALKHAAKAGEITVT--LSEGGELTLTVEDNGIGI-PPEDLPRIFEPFSTADKRGGGGTGLGLSIVRKL 81

                           90       100
                   ....*....|....*....|....*..
gi 521990627   593 AHRQGVHVALRAGEESGLLAGIRIPRT 619
Cdd:pfam02518   82 VELLGGTITVESEPGGGTTVTLTLPLA 108
PRK11100 PRK11100
sensory histidine kinase CreC; Provisional
 330-618 1.63e-08

sensory histidine kinase CreC; Provisional


Pssm-ID: 236846 [Multi-domain]  Cd Length: 475  Bit Score: 58.32  E-value: 1.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  330 LVRAVRQLRRKAREIarrslptalaelREGKPVsteiePLPAGAGAELDDLARSFDAVHG--EARN-------------- 393
Cdd:PRK11100  206 LNRSIRRLTRYADAV------------TEGKPV-----PLPKLGSSELRELAQALESMRVklEGKAyveqyvqtlthelk 268

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  394 --LAAAQASlrtnygtvfVNLSRRSQTLVQRQlRLIEQLERDeedpdhlgtlfaldhlATRMRRNNENLMVLSGAE-PNR 470
Cdd:PRK11100  269 spLAAIRGA---------AELLQEDPPPEDRA-RFTGNILTQ----------------SARLQQLIDRLLELARLEqRQE 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  471 ASAQQPVSLEDLLRAAVSEIE---QYRRVVLAP-PPAATVLGytAGDLVRL-VAELLDNATAFSAPDTTVTVSTSLaTDD 545
Cdd:PRK11100  323 LEVLEPVALAALLEELVEAREaqaAAKGITLRLrPDDARVLG--DPFLLRQaLGNLLDNAIDFSPEGGTITLSAEV-DGE 399

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  546 SVLIEVSDAGIGM----------------RPEelaaanerlaaaeaeEVPASRRMGLFVVGRLAHRQGVHVALRAGEESG 609
Cdd:PRK11100  400 QVALSVEDQGPGIpdyalpriferfyslpRPA---------------NGRKSTGLGLAFVREVARLHGGEVTLRNRPEGG 464


                  ....*....
gi 521990627  610 LLAGIRIPR 618
Cdd:PRK11100  465 VLATLTLPR 473
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 442-960 1.73e-07

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 55.07  E-value: 1.73e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  442 TLFALDHLATRMRRNNENLMVLSGAEPNRASaQQPVSLEDLLRAAVSEIEQYRRVVLAPPPAATVLGYTAGDLVRLVAEL 521
Cdd:COG5180     5 TILEIRLLATVPIPPNAARPVLSPELWAAAN-NDAVSQGDRSALASSPTRPYARKIFEPLDIKLALGKPQLPSVAEPEAY 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  522 LDNATAFSAPDTTVTVSTSLATDDSVLIEVSDAGIGMRPEELAAANERLAAAEAEEVPASRRMGLFVVGRLAHRQGVHVA 601
Cdd:COG5180    84 LDPAPPKSSPDTPEEQLGAPAGDLLVLPAAKTPELAAGALPAPAAAAALPKAKVTREATSASAGVALAAALLQRSDPILA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  602 LRAGEESG---------LLAGIRIPR---------TLLAGVAVPDGGLGAEHTRSAGRTRADTDDTVETVLPRPAKPYGG 663
Cdd:COG5180   164 KDPDGDSAstlpppaekLDKVLTEPRdalkdspekLDRPKVEVKDEAQEEPPDLTGGADHPRPEAASSPKVDPPSTSEAR 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  664 REPATPPRRPRTEPPPRAKQPPAPEPSEQAPAPQAAGASANGLPRRTPKQPPERTPIFDSMLSVWFSDPgvAADPIATPA 743
Cdd:COG5180   244 SRPATVDAQPEMRPPADAKERRRAAIGDTPAAEPPGLPVLEAGSEPQSDAPEAETARPIDVKGVASAPP--ATRPVRPPG 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  744 GAAAPDTEEPEQATRQAADETPTDHDA----AVLGGSETERWRFAADAGWQAVEEVAEVRQDTFTEAGLPKRTPRARLLP 819
Cdd:COG5180   322 GARDPGTPRPGQPTERPAGVPEAASDAgqppSAYPPAEEAVPGKPLEQGAPRPGSSGGDGAPFQPPNGAPQPGLGRRGAP 401

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  820 GSVPDRTGTTEGTQDTEVTERAEP-RPATQGAKHRSADSVRSRLASFQRGLR----QGRHSVGDEQPPVQRASADTELFT 894
Cdd:COG5180   402 GPPMGAGDLVQAALDGGGRETASLgGAAGGAGQGPKADFVPGDAESVSGPAGladqAGAAASTAMADFVAPVTDATPVDV 481

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 521990627  895 PEQ--VAPQPTEDTTSSWAFDPDGEQSPNgtvtAAPGGTDAESFTEAGLPRRRPKAQLVPGSQTPNGR 960
Cdd:COG5180   482 ADVlgVRPDAILGGNVAPASGLDAETRII----EAEGAPATEDFVAAELSELREAAEEKTGDAINAEV 545
HATPase_BasS-like cd16940
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
 514-615 3.03e-04

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli BasS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) similar to Escherichia coli BasS HK of the BasS-BasR two-component regulatory system (TCS). Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some contain a HAMP sensory domain, while some an N-terminal two-component sensor kinase domain.


Pssm-ID: 340417 [Multi-domain]  Cd Length: 113  Bit Score: 41.24  E-value: 3.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  514 LVRLVAELLDNATAFSAPDTTVTVStsLATDDSVLIEVSDAGIGMRPEELAAANERLAAAEAEEVPASrRMGLFVVGRLA 593
Cdd:cd16940    14 LFLLLRNLVDNAVRYSPQGSRVEIK--LSADDGAVIRVEDNGPGIDEEELEALFERFYRSDGQNYGGS-GLGLSIVKRIV 90

                          90       100
                  ....*....|....*....|..
gi 521990627  594 HRQGVHVALRAGEESGLLAGIR 615
Cdd:cd16940    91 ELHGGQIFLGNAQGGGLEAWVR 112
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 647-968 1.49e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 1.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  647 DDTVETVLPRPAK-----PYGGREPATPPRRPRTEPPPRAKQPPAPEPSEQAPAPQAAGASANGLPRRTPKQPPERTPIF 721
Cdd:PRK07764  368 SDDERGLLARLERlerrlGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGN 447

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  722 DSMLSVWFSDPGVAADPIATPAGAAAPDTEEPEQATRQAADETPTD-----HDAAVLGGSETERWRFAADAGWQAVEE-- 794
Cdd:PRK07764  448 APAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAApaapaAPAAPAGADDAATLRERWPEILAAVPKrs 527

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  795 ------------VAEVRQDT----FTEAGLPKR----------------------TPRARLLPGSVP-DRTGTTEGTQDT 835
Cdd:PRK07764  528 rktwaillpeatVLGVRGDTlvlgFSTGGLARRfaspgnaevlvtalaeelggdwQVEAVVGPAPGAaGGEGPPAPASSG 607

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  836 EVTERAEP----------RPATQGAKHRSADSVRSRLASFQRGLRQGRHS-VGDEQPPVQRASADTELFTPEQVAPQPTE 904
Cdd:PRK07764  608 PPEEAARPaapaapaapaAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVaVPDASDGGDGWPAKAGGAAPAAPPPAPAP 687

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 521990627  905 DTTSSWAFDPDGEQSPNGTVTAAPGGTDAesftEAGLPRRRPKAQLVPGSQTPNGRPEAMEPPD 968
Cdd:PRK07764  688 AAPAAPAGAAPAQPAPAPAATPPAGQADD----PAAQPPQAAQGASAPSPAADDPVPLPPEPDD 747
 
Name Accession Description Interval E-value
KdpD COG2205
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
427-619 1.18e-21

K+-sensing histidine kinase KdpD [Signal transduction mechanisms];


Pssm-ID: 441807 [Multi-domain]  Cd Length: 239  Bit Score: 94.97  E-value: 1.18e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  427 IEQLERDEE--DPDHLGTLFALDHLATRMRRNNENLMVLSGAEPNRASAQ-QPVSLEDLLRAAVSEI-----EQYRRVVL 498
Cdd:COG2205    38 AELLLDEEDlsPEERRELLEIIRESAERLLRLIEDLLDLSRLESGKLSLElEPVDLAELLEEAVEELrplaeEKGIRLEL 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  499 APPPAATVLGYTAGDLVRLVAELLDNATAFSAPDTTVTVSTSlATDDSVLIEVSDAGIGMRPEELAAANERLAAAEAEEV 578
Cdd:COG2205   118 DLPPELPLVYADPELLEQVLANLLDNAIKYSPPGGTITISAR-REGDGVRISVSDNGPGIPEEELERIFERFYRGDNSRG 196

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 521990627  579 PASRRMGLFVVGRLAHRQGVHVALRAGEESGLLAGIRIPRT 619
Cdd:COG2205   197 EGGTGLGLAIVKRIVEAHGGTIWVESEPGGGTTFTVTLPLA 237
NIT pfam08376
Nitrate and nitrite sensing; The nitrate- and nitrite sensing domain (NIT) is found in ...
 71-247 7.32e-16

Nitrate and nitrite sensing; The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.


Pssm-ID: 462453 [Multi-domain]  Cd Length: 227  Bit Score: 77.92  E-value: 7.32e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627    71 ITAVQVERRAAAG---GPRGQAP--------RTVDDAIGALRSSVADTELPDGpAKDAWQRTDKGLAALGTIRSSAARG- 138
Cdd:pfam08376    1 VHALQKERGLSAGylaSGGGGRFaaelaaqrAATDAALAALRAALAELALPAR-LADRLAALLRALDQLPALRRQVDAGa 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627   139 --GGAGITEYTGLIDSLLGFERAVAGASRDGGLTTRATSVTSLDEAREELSDQEAVLFSGIARGQLTQPESVTVRDAGVR 216
Cdd:pfam08376   80 lsALEALAAYTELIAALLDLVDELAAGSPDPELARQLRALAALLRAKEAAGQERALLAAALAAGRFTAAEYRRFLSLVAA 159

                          170       180       190
                   ....*....|....*....|....*....|.
gi 521990627   217 MDAALERFRAVGTESDVAKLNANLKKTDLDR 247
Cdd:pfam08376  160 QRAALAEFRAAATPEQRALYDATVTGPAVAA 190
BaeS COG0642
Signal transduction histidine kinase [Signal transduction mechanisms];
424-619 8.01e-16

Signal transduction histidine kinase [Signal transduction mechanisms];


Pssm-ID: 440407 [Multi-domain]  Cd Length: 328  Bit Score: 79.95  E-value: 8.01e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  424 LRLIEQLERDEEDPDHLGTLFALDHLATRMRRNNENLMVLSGAEPNRASAQ-QPVSLEDLLRAAVSEIEQYRR------V 496
Cdd:COG0642   128 IRGYLELLLEELDEEQREYLETILRSADRLLRLINDLLDLSRLEAGKLELEpEPVDLAELLEEVVELFRPLAEekgielE 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  497 VLAPPPAATVLGYtAGDLVRLVAELLDNATAFSAPDTTVTVSTSlATDDSVLIEVSDAGIGMRPEELAAANERLAAAEAE 576
Cdd:COG0642   208 LDLPDDLPTVRGD-PDRLRQVLLNLLSNAIKYTPEGGTVTVSVR-REGDRVRISVEDTGPGIPPEDLERIFEPFFRTDPS 285

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 521990627  577 EVPASRRMGLFVVGRLAHRQGVHVALRAGEESGLLAGIRIPRT 619
Cdd:COG0642   286 RRGGGTGLGLAIVKRIVELHGGTIEVESEPGKGTTFTVTLPLA 328
HATPase_c smart00387
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
 514-619 1.22e-10

Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.


Pssm-ID: 214643 [Multi-domain]  Cd Length: 111  Bit Score: 59.58  E-value: 1.22e-10
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627    514 LVRLVAELLDNATAFSAPDTTVTVSTSlATDDSVLIEVSDAGIGMRPEELAAANERLAAAEAEEVPASRR-MGLFVVGRL 592
Cdd:smart00387    6 LRQVLSNLLDNAIKYTPEGGRITVTLE-RDGDHVEITVEDNGPGIPPEDLEKIFEPFFRTDKRSRKIGGTgLGLSIVKKL 84

                            90       100
                    ....*....|....*....|....*..
gi 521990627    593 AHRQGVHVALRAGEESGLLAGIRIPRT 619
Cdd:smart00387   85 VELHGGEISVESEPGGGTTFTITLPLE 111
HATPase_c pfam02518
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ...
 513-619 5.15e-10

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 460579 [Multi-domain]  Cd Length: 109  Bit Score: 57.76  E-value: 5.15e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627   513 DLVRLVAELLDNATAFSAPDTTVTVStsLATDDSVLIEVSDAGIGMrPEELAAANERLAAAEAEEVPASRRMGLFVVGRL 592
Cdd:pfam02518    5 RLRQVLSNLLDNALKHAAKAGEITVT--LSEGGELTLTVEDNGIGI-PPEDLPRIFEPFSTADKRGGGGTGLGLSIVRKL 81

                           90       100
                   ....*....|....*....|....*..
gi 521990627   593 AHRQGVHVALRAGEESGLLAGIRIPRT 619
Cdd:pfam02518   82 VELLGGTITVESEPGGGTTVTLTLPLA 108
WalK COG5002
Sensor histidine kinase WalK [Signal transduction mechanisms];
450-563 2.65e-09

Sensor histidine kinase WalK [Signal transduction mechanisms];


Pssm-ID: 444026 [Multi-domain]  Cd Length: 390  Bit Score: 60.34  E-value: 2.65e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  450 ATRMRRNNENLMVLSGAEPNRASAQ-QPVSLEDLLRAAVSEIEQY---RRVVL---APPPAATVLGYtAGDLVRLVAELL 522
Cdd:COG5002   212 AERLSRLVNDLLDLSRLESGELKLEkEPVDLAELLEEVVEELRPLaeeKGIELeldLPEDPLLVLGD-PDRLEQVLTNLL 290

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 521990627  523 DNATAFSAPDTTVTVSTSlATDDSVLIEVSDAGIGMRPEEL 563
Cdd:COG5002   291 DNAIKYTPEGGTITVSLR-EEDDQVRISVRDTGIGIPEEDL 330
PRK11100 PRK11100
sensory histidine kinase CreC; Provisional
 330-618 1.63e-08

sensory histidine kinase CreC; Provisional


Pssm-ID: 236846 [Multi-domain]  Cd Length: 475  Bit Score: 58.32  E-value: 1.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  330 LVRAVRQLRRKAREIarrslptalaelREGKPVsteiePLPAGAGAELDDLARSFDAVHG--EARN-------------- 393
Cdd:PRK11100  206 LNRSIRRLTRYADAV------------TEGKPV-----PLPKLGSSELRELAQALESMRVklEGKAyveqyvqtlthelk 268

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  394 --LAAAQASlrtnygtvfVNLSRRSQTLVQRQlRLIEQLERDeedpdhlgtlfaldhlATRMRRNNENLMVLSGAE-PNR 470
Cdd:PRK11100  269 spLAAIRGA---------AELLQEDPPPEDRA-RFTGNILTQ----------------SARLQQLIDRLLELARLEqRQE 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  471 ASAQQPVSLEDLLRAAVSEIE---QYRRVVLAP-PPAATVLGytAGDLVRL-VAELLDNATAFSAPDTTVTVSTSLaTDD 545
Cdd:PRK11100  323 LEVLEPVALAALLEELVEAREaqaAAKGITLRLrPDDARVLG--DPFLLRQaLGNLLDNAIDFSPEGGTITLSAEV-DGE 399

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  546 SVLIEVSDAGIGM----------------RPEelaaanerlaaaeaeEVPASRRMGLFVVGRLAHRQGVHVALRAGEESG 609
Cdd:PRK11100  400 QVALSVEDQGPGIpdyalpriferfyslpRPA---------------NGRKSTGLGLAFVREVARLHGGEVTLRNRPEGG 464


                  ....*....
gi 521990627  610 LLAGIRIPR 618
Cdd:PRK11100  465 VLATLTLPR 473
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 442-960 1.73e-07

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 55.07  E-value: 1.73e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  442 TLFALDHLATRMRRNNENLMVLSGAEPNRASaQQPVSLEDLLRAAVSEIEQYRRVVLAPPPAATVLGYTAGDLVRLVAEL 521
Cdd:COG5180     5 TILEIRLLATVPIPPNAARPVLSPELWAAAN-NDAVSQGDRSALASSPTRPYARKIFEPLDIKLALGKPQLPSVAEPEAY 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  522 LDNATAFSAPDTTVTVSTSLATDDSVLIEVSDAGIGMRPEELAAANERLAAAEAEEVPASRRMGLFVVGRLAHRQGVHVA 601
Cdd:COG5180    84 LDPAPPKSSPDTPEEQLGAPAGDLLVLPAAKTPELAAGALPAPAAAAALPKAKVTREATSASAGVALAAALLQRSDPILA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  602 LRAGEESG---------LLAGIRIPR---------TLLAGVAVPDGGLGAEHTRSAGRTRADTDDTVETVLPRPAKPYGG 663
Cdd:COG5180   164 KDPDGDSAstlpppaekLDKVLTEPRdalkdspekLDRPKVEVKDEAQEEPPDLTGGADHPRPEAASSPKVDPPSTSEAR 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  664 REPATPPRRPRTEPPPRAKQPPAPEPSEQAPAPQAAGASANGLPRRTPKQPPERTPIFDSMLSVWFSDPgvAADPIATPA 743
Cdd:COG5180   244 SRPATVDAQPEMRPPADAKERRRAAIGDTPAAEPPGLPVLEAGSEPQSDAPEAETARPIDVKGVASAPP--ATRPVRPPG 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  744 GAAAPDTEEPEQATRQAADETPTDHDA----AVLGGSETERWRFAADAGWQAVEEVAEVRQDTFTEAGLPKRTPRARLLP 819
Cdd:COG5180   322 GARDPGTPRPGQPTERPAGVPEAASDAgqppSAYPPAEEAVPGKPLEQGAPRPGSSGGDGAPFQPPNGAPQPGLGRRGAP 401

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  820 GSVPDRTGTTEGTQDTEVTERAEP-RPATQGAKHRSADSVRSRLASFQRGLR----QGRHSVGDEQPPVQRASADTELFT 894
Cdd:COG5180   402 GPPMGAGDLVQAALDGGGRETASLgGAAGGAGQGPKADFVPGDAESVSGPAGladqAGAAASTAMADFVAPVTDATPVDV 481

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 521990627  895 PEQ--VAPQPTEDTTSSWAFDPDGEQSPNgtvtAAPGGTDAESFTEAGLPRRRPKAQLVPGSQTPNGR 960
Cdd:COG5180   482 ADVlgVRPDAILGGNVAPASGLDAETRII----EAEGAPATEDFVAAELSELREAAEEKTGDAINAEV 545
PksD COG3321
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
 117-647 1.19e-06

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442550 [Multi-domain]  Cd Length: 1386  Bit Score: 52.95  E-value: 1.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  117 AWQRTDKGLAALGTIRSSAARGGGAgiteytglidsLLGFERAVAGASRDGGLTTRATSVTSLDEAREELSDQEAVLFSG 196
Cdd:COG3321   867 PFQREDAAAALLAAALAAALAAAAA-----------LGALLLAALAAALAAALLALAAAAAAALALAAAALAALLALVAL 935

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  197 IARGQLTQPESVTVRDAGVRMDAALERFRAVGTESDVAKLNANLKKTDLDRHAALVTEAFKPGRIKVSAADWSASSAAVA 276
Cdd:COG3321   936 AAAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAAAALLLAAA 1015

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  277 GQLRGVTESVEGELTAQANALHDAARTAAIVTGLLVLLAVLASAAVAAFAGRSLVRAVRQLRRKAREIARRSLPTALAEL 356
Cdd:COG3321  1016 AAAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAAAL 1095

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  357 REGKPVSTEIEPLPAGAGAELDDLARSFDAVHGEARNLAAAQASLRTNYGTVFVNLSRRSQTLVQRQLRLIEQLERDEED 436
Cdd:COG3321  1096 ALALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALLL 1175

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  437 PDHLGTLFALDHLATRMRRNNENLMVLSGAEPNRASAQQPVSLEDLLRAAVSEIEQYRRVVLAPPPAATVLGYTAGDLVR 516
Cdd:COG3321  1176 ALALALAAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAALAAAAAAL 1255

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  517 LVAELLDNATAFSAPDTTVTVSTSLATDDSVLIEVSDAGIGMRPEELAAANERLAAAEAEEVPASRRMGLFVVGRLAHRQ 596
Cdd:COG3321  1256 LAALAALALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAALLAAALAALAA 1335

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|.
gi 521990627  597 GVHVALRAGEESGLLAGIRIPRTLLAGVAVPDGGLGAEHTRSAGRTRADTD 647
Cdd:COG3321  1336 AVAAALALAAAAAAAAAAAAAAAAAAALAAAAGAAAAAAALALAALAAAVA 1386
COG4251 COG4251
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal ...
 88-561 1.60e-06

Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms];


Pssm-ID: 443393 [Multi-domain]  Cd Length: 503  Bit Score: 52.09  E-value: 1.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627   88 QAPRTVDDAIGALRSSVADTELPDGPAKDAWQRTDKGLAALGTIRSSAARGGGAGITEYTGLIDSLLGFERAVAGASRDG 167
Cdd:COG4251     4 LALLLLLLLLLLLLLLLLLLLLLVLLLALALLLLLALLVLLLLLIRLLLLLLLSLLALLLLLLLLLLLLLVLAALALLLL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  168 GLTTRATSVTsLDEAREELSDQEAVLFSGIARGQLTQPESVTVRDAGVRMDAALERFRAVGTESDVAKLNANLKKTDLDR 247
Cdd:COG4251    84 LLLLELALVL-LALLLVLLLLLALLLLLALLLLLELLLLLLALLLLLLLLALLLLEELALLRLALALLLLLLLLLLLLLL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  248 HAALVTEAFKPGRIKVSAADWSASSAAVAGQLRGVTESVEGELTAQANALHDAARTAAIVTGLLVLLAVLASAAVAAFAG 327
Cdd:COG4251   163 LLALILALLLAALAELELLLLLLLVLLLLLLLLLLLLLLLLRLLLELLLLLEAELLLSLGGGLGLLLLLLLLLVLLLLLI 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  328 RSLVRAVRQLRRKAREIARRSLPTALAELREgkpvstEIEPlpagAGAELDDLARSfdAVHgearNLaaaQASLRTnygt 407
Cdd:COG4251   243 LLLLLLILVLELLELRLELEELEEELEERTA------ELER----SNEELEQFAYV--ASH----DL---REPLRK---- 299

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  408 vfvnlsrrsqtlVQRQLRLIEQLERDEEDPDhlgtlfALDHL------ATRMRRNNENLMVLSGAEpNRASAQQPVSLED 481
Cdd:COG4251   300 ------------ISGFSQLLEEDYGDKLDEE------GREYLerirdaAERMQALIDDLLAYSRVG-RQELEFEPVDLNE 360

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  482 LLRAAVSEIE---QYRRVVLAPPPAATVLGYtAGDLVRLVAELLDNATAFSAPDTTVTVS-TSLATDDSVLIEVSDAGIG 557
Cdd:COG4251   361 LLEEVLEDLEpriEERGAEIEVGPLPTVRGD-PTLLRQVFQNLISNAIKYSRPGEPPRIEiGAEREGGEWVFSVRDNGIG 439


                  ....
gi 521990627  558 MRPE 561
Cdd:COG4251   440 IDPE 443
PRK10337 PRK10337
sensor protein QseC; Provisional
 330-615 2.13e-04

sensor protein QseC; Provisional


Pssm-ID: 182388 [Multi-domain]  Cd Length: 449  Bit Score: 45.03  E-value: 2.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  330 LVRAVRQLRRKAREIARRSlPTALAELREGKpVSTEIEPLPAgagaELDDL-ARSFDAVHGEARNLAAAQASLRTNYGTV 408
Cdd:PRK10337  182 LGRELAPLKKLALALRMRD-PDSETPLNATG-VPSEVRPLVE----ALNQLfARTHAMMVRERRFTSDAAHELRSPLAAL 255

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  409 FVnlsrrsQTLVQrqlrlieQLERDEEDPDH--LGTLFALDHLATRMRrnnENLMVLS--GAEPNRASAQqPVSLEDLLR 484
Cdd:PRK10337  256 KV------QTEVA-------QLSDDDPQARKkaLLQLHAGIDRATRLV---DQLLTLSrlDSLDNLQDVA-EIPLEDLLQ 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  485 AAVseIEQYRrvvlaPPPAATV---LGYTAGDLVR---------LVAELLDNATAFSAPDTTVTVstslaTDDSVLIEVS 552
Cdd:PRK10337  319 SAV--MDIYH-----TAQQAGIdvrLTLNAHPVIRtgqplllslLVRNLLDNAIRYSPQGSVVDV-----TLNARNFTVR 386

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 521990627  553 DAGIGMRPEELAAANERLAAAEAEEVPASrRMGLFVVGRLAHRQGVHVALRAGEESGLLAGIR 615
Cdd:PRK10337  387 DNGPGVTPEALARIGERFYRPPGQEATGS-GLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVS 448
COG4191 COG4191
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal ...
 426-563 2.37e-04

Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms];


Pssm-ID: 443345 [Multi-domain]  Cd Length: 361  Bit Score: 44.40  E-value: 2.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  426 LIEQLERDEEDPDHLGTLFALDHLATRMRRNNENLMVLSGAEPnraSAQQPVSLEDLLRAAVS----EIEQYR-RVVLAP 500
Cdd:COG4191   167 LRRRLEDEPDPEELREALERILEGAERAAEIVRSLRAFSRRDE---EEREPVDLNELIDEALEllrpRLKARGiEVELDL 243

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 521990627  501 PPAA-TVLGYtAGDLVRLVAELLDNAT-AFSAPDT-TVTVSTSLAtDDSVLIEVSDAGIGMRPEEL 563
Cdd:COG4191   244 PPDLpPVLGD-PGQLEQVLLNLLINAIdAMEEGEGgRITISTRRE-GDYVVISVRDNGPGIPPEVL 307
HATPase_BasS-like cd16940
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
 514-615 3.03e-04

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli BasS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) similar to Escherichia coli BasS HK of the BasS-BasR two-component regulatory system (TCS). Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some contain a HAMP sensory domain, while some an N-terminal two-component sensor kinase domain.


Pssm-ID: 340417 [Multi-domain]  Cd Length: 113  Bit Score: 41.24  E-value: 3.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  514 LVRLVAELLDNATAFSAPDTTVTVStsLATDDSVLIEVSDAGIGMRPEELAAANERLAAAEAEEVPASrRMGLFVVGRLA 593
Cdd:cd16940    14 LFLLLRNLVDNAVRYSPQGSRVEIK--LSADDGAVIRVEDNGPGIDEEELEALFERFYRSDGQNYGGS-GLGLSIVKRIV 90

                          90       100
                  ....*....|....*....|..
gi 521990627  594 HRQGVHVALRAGEESGLLAGIR 615
Cdd:cd16940    91 ELHGGQIFLGNAQGGGLEAWVR 112
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 647-968 1.49e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 1.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  647 DDTVETVLPRPAK-----PYGGREPATPPRRPRTEPPPRAKQPPAPEPSEQAPAPQAAGASANGLPRRTPKQPPERTPIF 721
Cdd:PRK07764  368 SDDERGLLARLERlerrlGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGN 447

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  722 DSMLSVWFSDPGVAADPIATPAGAAAPDTEEPEQATRQAADETPTD-----HDAAVLGGSETERWRFAADAGWQAVEE-- 794
Cdd:PRK07764  448 APAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAApaapaAPAAPAGADDAATLRERWPEILAAVPKrs 527

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  795 ------------VAEVRQDT----FTEAGLPKR----------------------TPRARLLPGSVP-DRTGTTEGTQDT 835
Cdd:PRK07764  528 rktwaillpeatVLGVRGDTlvlgFSTGGLARRfaspgnaevlvtalaeelggdwQVEAVVGPAPGAaGGEGPPAPASSG 607

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  836 EVTERAEP----------RPATQGAKHRSADSVRSRLASFQRGLRQGRHS-VGDEQPPVQRASADTELFTPEQVAPQPTE 904
Cdd:PRK07764  608 PPEEAARPaapaapaapaAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVaVPDASDGGDGWPAKAGGAAPAAPPPAPAP 687

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 521990627  905 DTTSSWAFDPDGEQSPNGTVTAAPGGTDAesftEAGLPRRRPKAQLVPGSQTPNGRPEAMEPPD 968
Cdd:PRK07764  688 AAPAAPAGAAPAQPAPAPAATPPAGQADD----PAAQPPQAAQGASAPSPAADDPVPLPPEPDD 747
HATPase_BvrS-ChvG-like cd16953
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
 514-563 1.57e-03

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Brucella abortus BvrS and Sinorhizobium meliloti ChvG; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Brucella abortus BvrS of the BvrR-BvrS two-component regulatory system (TCS), which controls cell invasion and intracellular survival, as well as Sinorhizobium meliloti and Agrobacterium tumefaciens ChvG of the ChvI-ChvG TCS necessary for endosymbiosis and pathogenicity in plants. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), an accessory HAMP sensor domain, a periplasmic stimulus-sensing domain, and some also have a sensor N-terminal transmembrane domain.


Pssm-ID: 340429 [Multi-domain]  Cd Length: 110  Bit Score: 39.09  E-value: 1.57e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 521990627  514 LVRLVAELLDNATAFSAPDTTVTVSTSLATDDSVLIEVSDAGIGMRPEEL 563
Cdd:cd16953     1 LGQVLRNLIGNAISFSPPDTGRITVSAMPTGKMVTISVEDEGPGIPQEKL 50
CitA COG3290
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ...
 513-563 1.60e-03

Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];


Pssm-ID: 442519 [Multi-domain]  Cd Length: 389  Bit Score: 42.14  E-value: 1.60e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 521990627  513 DLVRLVAELLDNA----TAFSAPDTTVTVSTSlATDDSVLIEVSDAGIGMRPEEL 563
Cdd:COG3290   281 DLVTILGNLLDNAieavEKLPEEERRVELSIR-DDGDELVIEVEDSGPGIPEELL 334
PHA03378 PHA03378
EBNA-3B; Provisional
 659-849 1.78e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 42.36  E-value: 1.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  659 KPYGGREPATPPRRPRTEPPPRAKQPPAPEPSEQAPAPQAAGASANGLPRRTPKQPPERTPIFDSmlSVWFSDPGVAADP 738
Cdd:PHA03378  599 VPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYK--PTWTQIGHIPYQP 676

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  739 IATPAGAAAPDTEEPEQATRQAADETPTDHDAAVLGGSETERWRFAADAGWQAVEEVAEVRQDTFTEAGLPKRTPRARLL 818
Cdd:PHA03378  677 SPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARP 756

                         170       180       190
                  ....*....|....*....|....*....|.
gi 521990627  819 PGSVPDRTGTTEGTQDtevteRAEPRPATQG 849
Cdd:PHA03378  757 PAAAPGRARPPAAAPG-----APTPQPPPQA 782
RsbW COG2172
Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms];
483-599 7.57e-03

Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms];


Pssm-ID: 441775 [Multi-domain]  Cd Length: 127  Bit Score: 37.59  E-value: 7.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521990627  483 LRAAVSEIEQYRRVVLApppAATVLGYTAGDLVRL---VAELLDNA---TAFSAPDTTVTVSTSLaTDDSVLIEVSDAGI 556
Cdd:COG2172     4 LPADLEDLGLARRAVRA---LLRELGLDEDDADDLvlaVSEAVTNAvrhAYGGDPDGPVEVELEL-DPDGLEIEVRDEGP 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 521990627  557 GMRPEELaaanerlaaAEAEEVPASRRMGLFVVGRLAHRQGVH 599
Cdd:COG2172    80 GFDPEDL---------PDPYSTLAEGGRGLFLIRRLMDEVEYE 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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