|
Name |
Accession |
Description |
Interval |
E-value |
| NIT |
pfam08376 |
Nitrate and nitrite sensing; The nitrate- and nitrite sensing domain (NIT) is found in ... |
68-306 |
1.89e-27 |
|
Nitrate and nitrite sensing; The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.
Pssm-ID: 462453 [Multi-domain] Cd Length: 227 Bit Score: 111.05 E-value: 1.89e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 68 SLQQERQLALQFLDSPSAGPQQLQ--QQQQDTDGKLKGLQDAFAAtiSSAPDEIASKVTALKGQLDQLPVVRSQVTFRSV 145
Cdd:pfam08376 3 ALQKERGLSAGYLASGGGGRFAAElaAQRAATDAALAALRAALAE--LALPARLADRLAALLRALDQLPALRRQVDAGAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 146 NRAQVNGYYNGVLDSAATLFDTQARIVPDATAVQGAISATSLFRAGDLMSRETSLVSAAFAGGTFEPDDFVQFSQFVGYY 225
Cdd:pfam08376 81 SALEALAAYTELIAALLDLVDELAAGSPDPELARQLRALAALLRAKEAAGQERALLAAALAAGRFTAAEYRRFLSLVAAQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 226 RTQLAQLAPFLEPAVRQHYQTLAASDAWKRLSAAEAAIVkhgpwsssdqenvpiTAADWHALTAQVSQGLNQLTIEQADQ 305
Cdd:pfam08376 161 RAALAEFRAAATPEQRALYDATVTGPAVAAAERLRDRLV---------------DAAAWFAASTARIDLLREVEDRLADD 225
|
.
gi 522152058 306 V 306
Cdd:pfam08376 226 L 226
|
|
| KdpD |
COG2205 |
K+-sensing histidine kinase KdpD [Signal transduction mechanisms]; |
413-640 |
2.45e-20 |
|
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
Pssm-ID: 441807 [Multi-domain] Cd Length: 239 Bit Score: 90.74 E-value: 2.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 413 AVNAAASEAKARSGVHNVFL-GIAH--RNQV-LVHRQLQILdEMESREENSTQLASLFQLDHLAARARRTTENLIILGGK 488
Cdd:COG2205 1 ELEEALEELEELERLKSEFLaNVSHelRTPLtSILGAAELL-LDEEDLSPEERRELLEIIRESAERLLRLIEDLLDLSRL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 489 QPGRR--WRKPVSLMEVLRAAVSETEQYS-----RVQVEQVPDVAIVGTAVADTIHLVAELVDNATSFSPPGSQVEVTSR 561
Cdd:COG2205 80 ESGKLslELEPVDLAELLEEAVEELRPLAeekgiRLELDLPPELPLVYADPELLEQVLANLLDNAIKYSPPGGTITISAR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 562 MVARGVVVDVSDQGLGMKEgvrdwansmmADAPE-FDAMAlRADSS-------LGLFVVARLASRLGITVTFDPSRYGGT 633
Cdd:COG2205 160 REGDGVRISVSDNGPGIPE----------EELERiFERFY-RGDNSrgeggtgLGLAIVKRIVEAHGGTIWVESEPGGGT 228
|
....*..
gi 522152058 634 RATVLIP 640
Cdd:COG2205 229 TFTVTLP 235
|
|
| HATPase_c |
smart00387 |
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
537-640 |
5.52e-12 |
|
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Pssm-ID: 214643 [Multi-domain] Cd Length: 111 Bit Score: 63.05 E-value: 5.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 537 HLVAELVDNATSFSPPGSQVEVTSRMVARGVVVDVSDQGLGMKEGVRDWAnsmmadapeFDAMaLRADSS--------LG 608
Cdd:smart00387 8 QVLSNLLDNAIKYTPEGGRITVTLERDGDHVEITVEDNGPGIPPEDLEKI---------FEPF-FRTDKRsrkiggtgLG 77
|
90 100 110
....*....|....*....|....*....|..
gi 522152058 609 LFVVARLASRLGITVTFDPSRYGGTRATVLIP 640
Cdd:smart00387 78 LSIVKKLVELHGGEISVESEPGGGTTFTITLP 109
|
|
| HATPase_c |
pfam02518 |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ... |
537-640 |
2.23e-10 |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 460579 [Multi-domain] Cd Length: 109 Bit Score: 58.53 E-value: 2.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 537 HLVAELVDNATSFSPPGSQVEVTSRmVARGVVVDVSDQGLGMKEGVRDWANSMMADAPEFDamalRADSSLGLFVVARLA 616
Cdd:pfam02518 8 QVLSNLLDNALKHAAKAGEITVTLS-EGGELTLTVEDNGIGIPPEDLPRIFEPFSTADKRG----GGGTGLGLSIVRKLV 82
|
90 100
....*....|....*....|....
gi 522152058 617 SRLGITVTFDPSRYGGTRATVLIP 640
Cdd:pfam02518 83 ELLGGTITVESEPGGGTTVTLTLP 106
|
|
| PRK11100 |
PRK11100 |
sensory histidine kinase CreC; Provisional |
495-640 |
2.18e-07 |
|
sensory histidine kinase CreC; Provisional
Pssm-ID: 236846 [Multi-domain] Cd Length: 475 Bit Score: 54.08 E-value: 2.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 495 RKPVSLMEVLRAAVSETE---QYSRVQVE-QVPDVAIVGtavaDTIHL---VAELVDNATSFSPPGSQVEVTSRMVARGV 567
Cdd:PRK11100 326 LEPVALAALLEELVEAREaqaAAKGITLRlRPDDARVLG----DPFLLrqaLGNLLDNAIDFSPEGGTITLSAEVDGEQV 401
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 522152058 568 VVDVSDQGlgmkEGVRDWANSMMADapEFDAMAlRADSS-----LGLFVVARLASRLGITVTFDPSRYGGTRATVLIP 640
Cdd:PRK11100 402 ALSVEDQG----PGIPDYALPRIFE--RFYSLP-RPANGrkstgLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLP 472
|
|
| HATPase_BasS-like |
cd16940 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
538-637 |
6.83e-07 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli BasS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) similar to Escherichia coli BasS HK of the BasS-BasR two-component regulatory system (TCS). Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some contain a HAMP sensory domain, while some an N-terminal two-component sensor kinase domain.
Pssm-ID: 340417 [Multi-domain] Cd Length: 113 Bit Score: 48.56 E-value: 6.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 538 LVAELVDNATSFSPPGSQVEVTSRMVArGVVVDVSDQGLGMKEgvrdwaNSMMADAPEF---DAMALRAdSSLGLFVVAR 614
Cdd:cd16940 17 LLRNLVDNAVRYSPQGSRVEIKLSADD-GAVIRVEDNGPGIDE------EELEALFERFyrsDGQNYGG-SGLGLSIVKR 88
|
90 100
....*....|....*....|...
gi 522152058 615 LASRLGITVTFDPSRYGGTRATV 637
Cdd:cd16940 89 IVELHGGQIFLGNAQGGGLEAWV 111
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
645-769 |
4.40e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 43.71 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 645 ADPNASDPAMEAPELAQVGASASESAPVARPVPEAAEPAPRPFPARPLPSPVPREPQHRAEPDAHSPVSGTLDVSGTPQA 724
Cdd:PRK12323 461 AARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFET 540
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 522152058 725 PATAQVPPHVPAA------------PRAAEPDLSELRGDDRPRLPRRQPQQNLVAQL 769
Cdd:PRK12323 541 LAPAPAAAPAPRAaaatepvvaprpPRASASGLPDMFDGDWPALAARLPVRGLAQQL 597
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
645-761 |
9.31e-04 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 42.45 E-value: 9.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 645 ADPNASDPAMEAPELAQVGASASESAPVARPVPEAAEPAPRPFPARPLPSPVPR---EPQHRAEPDAHSPVSGTLDVSGT 721
Cdd:NF040712 212 ARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAApaaEPDEATRDAGEPPAPGAAETPEA 291
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 522152058 722 PQAPATAQVPPHVPAAPRAAEPDLSELRGDDRPRLPRRQP 761
Cdd:NF040712 292 AEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPKRRRRRA 331
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
321-424 |
1.73e-03 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 41.49 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 321 AIIGSIVALLASLAAIIVAVRVSRSLVD--RTLMTRLERLRNDSLDlarNRLPkivgrlksgepvdveaelpklDHGRDE 398
Cdd:COG5000 8 LLLLLLIALLLLLLALWLALLLARRLTRplRRLAEATRAVAAGDLS---VRLP---------------------VTGDDE 63
|
90 100
....*....|....*....|....*...
gi 522152058 399 IGQVAEAFN--TAQLTAVNAAASEAKAR 424
Cdd:COG5000 64 IGELARAFNrmTDQLKEQREELEERRRY 91
|
|
| DUF4813 |
pfam16072 |
Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. ... |
666-743 |
2.67e-03 |
|
Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 345 and 672 amino acids in length.
Pssm-ID: 435117 [Multi-domain] Cd Length: 288 Bit Score: 40.51 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 666 ASESAPVARPVPEAAEPAPRPFParplPSPVPREPQHRAEPDAHSPVSGTLDVSGTPQ------APATAQVPPHVPAAPR 739
Cdd:pfam16072 169 AAPAAPAYPVAPAAYPAQAPAAA----PAPAPGAPQTPLAPLNPVAAAPAAAAGAAAApvvaaaAPAAAAPPPPAPAAPP 244
|
....
gi 522152058 740 AAEP 743
Cdd:pfam16072 245 ADAA 248
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NIT |
pfam08376 |
Nitrate and nitrite sensing; The nitrate- and nitrite sensing domain (NIT) is found in ... |
68-306 |
1.89e-27 |
|
Nitrate and nitrite sensing; The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.
Pssm-ID: 462453 [Multi-domain] Cd Length: 227 Bit Score: 111.05 E-value: 1.89e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 68 SLQQERQLALQFLDSPSAGPQQLQ--QQQQDTDGKLKGLQDAFAAtiSSAPDEIASKVTALKGQLDQLPVVRSQVTFRSV 145
Cdd:pfam08376 3 ALQKERGLSAGYLASGGGGRFAAElaAQRAATDAALAALRAALAE--LALPARLADRLAALLRALDQLPALRRQVDAGAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 146 NRAQVNGYYNGVLDSAATLFDTQARIVPDATAVQGAISATSLFRAGDLMSRETSLVSAAFAGGTFEPDDFVQFSQFVGYY 225
Cdd:pfam08376 81 SALEALAAYTELIAALLDLVDELAAGSPDPELARQLRALAALLRAKEAAGQERALLAAALAAGRFTAAEYRRFLSLVAAQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 226 RTQLAQLAPFLEPAVRQHYQTLAASDAWKRLSAAEAAIVkhgpwsssdqenvpiTAADWHALTAQVSQGLNQLTIEQADQ 305
Cdd:pfam08376 161 RAALAEFRAAATPEQRALYDATVTGPAVAAAERLRDRLV---------------DAAAWFAASTARIDLLREVEDRLADD 225
|
.
gi 522152058 306 V 306
Cdd:pfam08376 226 L 226
|
|
| KdpD |
COG2205 |
K+-sensing histidine kinase KdpD [Signal transduction mechanisms]; |
413-640 |
2.45e-20 |
|
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
Pssm-ID: 441807 [Multi-domain] Cd Length: 239 Bit Score: 90.74 E-value: 2.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 413 AVNAAASEAKARSGVHNVFL-GIAH--RNQV-LVHRQLQILdEMESREENSTQLASLFQLDHLAARARRTTENLIILGGK 488
Cdd:COG2205 1 ELEEALEELEELERLKSEFLaNVSHelRTPLtSILGAAELL-LDEEDLSPEERRELLEIIRESAERLLRLIEDLLDLSRL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 489 QPGRR--WRKPVSLMEVLRAAVSETEQYS-----RVQVEQVPDVAIVGTAVADTIHLVAELVDNATSFSPPGSQVEVTSR 561
Cdd:COG2205 80 ESGKLslELEPVDLAELLEEAVEELRPLAeekgiRLELDLPPELPLVYADPELLEQVLANLLDNAIKYSPPGGTITISAR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 562 MVARGVVVDVSDQGLGMKEgvrdwansmmADAPE-FDAMAlRADSS-------LGLFVVARLASRLGITVTFDPSRYGGT 633
Cdd:COG2205 160 REGDGVRISVSDNGPGIPE----------EELERiFERFY-RGDNSrgeggtgLGLAIVKRIVEAHGGTIWVESEPGGGT 228
|
....*..
gi 522152058 634 RATVLIP 640
Cdd:COG2205 229 TFTVTLP 235
|
|
| BaeS |
COG0642 |
Signal transduction histidine kinase [Signal transduction mechanisms]; |
316-640 |
2.23e-14 |
|
Signal transduction histidine kinase [Signal transduction mechanisms];
Pssm-ID: 440407 [Multi-domain] Cd Length: 328 Bit Score: 74.94 E-value: 2.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 316 AQLRNAIIGSIVALLASLAAIIVAVRVSRSLVDRTLMTRLERLRNDSLDLARNRLPKIVGRLKSGEPVDVEAELPKLDHG 395
Cdd:COG0642 1 LLLLLLLLVLLLLLLLLLLLALLLLLLLLLLLALLLLLALLLLLLLLLLLLLLLALALLALLLLLLLLLLLLLLLLLLLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 396 RDEIGQVAEAFNTAQLTAVNAAASEAKARsgvHNVFL-GIAH--RNQVLVhrqLQILDEMESREENSTQLASLFQLDHLA 472
Cdd:COG0642 81 LLLLLLLLLLLLLLLLLALLLLLEEANEA---KSRFLaNVSHelRTPLTA---IRGYLELLLEELDEEQREYLETILRSA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 473 ARARRTTENLIILGGKQPGRR--WRKPVSLMEVLRAAVSETEQYS-----RVQVEQVPDVAIVGTAVADTIHLVAELVDN 545
Cdd:COG0642 155 DRLLRLINDLLDLSRLEAGKLelEPEPVDLAELLEEVVELFRPLAeekgiELELDLPDDLPTVRGDPDRLRQVLLNLLSN 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 546 ATSFSPPGSQVEVTSRMVARGVVVDVSDQGLGMKEGVRDWAnsmmadapeFDAMAlRADSS-------LGLFVVARLASR 618
Cdd:COG0642 235 AIKYTPEGGTVTVSVRREGDRVRISVEDTGPGIPPEDLERI---------FEPFF-RTDPSrrgggtgLGLAIVKRIVEL 304
|
330 340
....*....|....*....|..
gi 522152058 619 LGITVTFDPSRYGGTRATVLIP 640
Cdd:COG0642 305 HGGTIEVESEPGKGTTFTVTLP 326
|
|
| HATPase_c |
smart00387 |
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
537-640 |
5.52e-12 |
|
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Pssm-ID: 214643 [Multi-domain] Cd Length: 111 Bit Score: 63.05 E-value: 5.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 537 HLVAELVDNATSFSPPGSQVEVTSRMVARGVVVDVSDQGLGMKEGVRDWAnsmmadapeFDAMaLRADSS--------LG 608
Cdd:smart00387 8 QVLSNLLDNAIKYTPEGGRITVTLERDGDHVEITVEDNGPGIPPEDLEKI---------FEPF-FRTDKRsrkiggtgLG 77
|
90 100 110
....*....|....*....|....*....|..
gi 522152058 609 LFVVARLASRLGITVTFDPSRYGGTRATVLIP 640
Cdd:smart00387 78 LSIVKKLVELHGGEISVESEPGGGTTFTITLP 109
|
|
| HATPase_c |
pfam02518 |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ... |
537-640 |
2.23e-10 |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 460579 [Multi-domain] Cd Length: 109 Bit Score: 58.53 E-value: 2.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 537 HLVAELVDNATSFSPPGSQVEVTSRmVARGVVVDVSDQGLGMKEGVRDWANSMMADAPEFDamalRADSSLGLFVVARLA 616
Cdd:pfam02518 8 QVLSNLLDNALKHAAKAGEITVTLS-EGGELTLTVEDNGIGIPPEDLPRIFEPFSTADKRG----GGGTGLGLSIVRKLV 82
|
90 100
....*....|....*....|....
gi 522152058 617 SRLGITVTFDPSRYGGTRATVLIP 640
Cdd:pfam02518 83 ELLGGTITVESEPGGGTTVTLTLP 106
|
|
| WalK |
COG5002 |
Sensor histidine kinase WalK [Signal transduction mechanisms]; |
495-640 |
7.55e-09 |
|
Sensor histidine kinase WalK [Signal transduction mechanisms];
Pssm-ID: 444026 [Multi-domain] Cd Length: 390 Bit Score: 58.41 E-value: 7.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 495 RKPVSLMEVLRAAVSETEQYS-----RVQVEQVPDVAIVgtaVADTIHL---VAELVDNATSFSPPGSQVEVTSRMVARG 566
Cdd:COG5002 237 KEPVDLAELLEEVVEELRPLAeekgiELELDLPEDPLLV---LGDPDRLeqvLTNLLDNAIKYTPEGGTITVSLREEDDQ 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 567 VVVDVSDQGLGMKEgvrdwansmmADAPE-FDAMAlRADSS---------LGLFVVARLASRLGITVTFDPSRYGGTRAT 636
Cdd:COG5002 314 VRISVRDTGIGIPE----------EDLPRiFERFY-RVDKSrsretggtgLGLAIVKHIVEAHGGRIWVESEPGKGTTFT 382
|
....
gi 522152058 637 VLIP 640
Cdd:COG5002 383 ITLP 386
|
|
| PRK11100 |
PRK11100 |
sensory histidine kinase CreC; Provisional |
495-640 |
2.18e-07 |
|
sensory histidine kinase CreC; Provisional
Pssm-ID: 236846 [Multi-domain] Cd Length: 475 Bit Score: 54.08 E-value: 2.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 495 RKPVSLMEVLRAAVSETE---QYSRVQVE-QVPDVAIVGtavaDTIHL---VAELVDNATSFSPPGSQVEVTSRMVARGV 567
Cdd:PRK11100 326 LEPVALAALLEELVEAREaqaAAKGITLRlRPDDARVLG----DPFLLrqaLGNLLDNAIDFSPEGGTITLSAEVDGEQV 401
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 522152058 568 VVDVSDQGlgmkEGVRDWANSMMADapEFDAMAlRADSS-----LGLFVVARLASRLGITVTFDPSRYGGTRATVLIP 640
Cdd:PRK11100 402 ALSVEDQG----PGIPDYALPRIFE--RFYSLP-RPANGrkstgLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLP 472
|
|
| COG4191 |
COG4191 |
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal ... |
433-640 |
3.47e-07 |
|
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms];
Pssm-ID: 443345 [Multi-domain] Cd Length: 361 Bit Score: 53.26 E-value: 3.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 433 GIAHR-NQVL--VHRQLQILDEMESREENSTQLASLFQ-LDHLAARARRTTENLIILGGKQPGRRwrKPVSLMEVLRAAV 508
Cdd:COG4191 148 GIAHEiNNPLaaILGNAELLRRRLEDEPDPEELREALErILEGAERAAEIVRSLRAFSRRDEEER--EPVDLNELIDEAL 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 509 SETEQ---YSRVQVEQVPDVAIVgTAVADTIHL---VAELVDN---ATSFSPPGsQVEVTSRMVARGVVVDVSDQGLGMK 579
Cdd:COG4191 226 ELLRPrlkARGIEVELDLPPDLP-PVLGDPGQLeqvLLNLLINaidAMEEGEGG-RITISTRREGDYVVISVRDNGPGIP 303
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 522152058 580 EGVRDWAnsmmadapeFDAM----ALRADSSLGLFVVARLASRLGITVTFDPSRYGGTRATVLIP 640
Cdd:COG4191 304 PEVLERI---------FEPFfttkPVGKGTGLGLSISYGIVEKHGGRIEVESEPGGGTTFTITLP 359
|
|
| HATPase_BasS-like |
cd16940 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
538-637 |
6.83e-07 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli BasS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) similar to Escherichia coli BasS HK of the BasS-BasR two-component regulatory system (TCS). Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some contain a HAMP sensory domain, while some an N-terminal two-component sensor kinase domain.
Pssm-ID: 340417 [Multi-domain] Cd Length: 113 Bit Score: 48.56 E-value: 6.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 538 LVAELVDNATSFSPPGSQVEVTSRMVArGVVVDVSDQGLGMKEgvrdwaNSMMADAPEF---DAMALRAdSSLGLFVVAR 614
Cdd:cd16940 17 LLRNLVDNAVRYSPQGSRVEIKLSADD-GAVIRVEDNGPGIDE------EELEALFERFyrsDGQNYGG-SGLGLSIVKR 88
|
90 100
....*....|....*....|...
gi 522152058 615 LASRLGITVTFDPSRYGGTRATV 637
Cdd:cd16940 89 IVELHGGQIFLGNAQGGGLEAWV 111
|
|
| PRK10337 |
PRK10337 |
sensor protein QseC; Provisional |
497-637 |
8.95e-06 |
|
sensor protein QseC; Provisional
Pssm-ID: 182388 [Multi-domain] Cd Length: 449 Bit Score: 48.88 E-value: 8.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 497 PVSLMEVLRAAVseTEQYSRVQVEQVpDVA--IVGTAVADTIH------LVAELVDNATSFSPPGSQVEVTsrMVARGvv 568
Cdd:PRK10337 310 EIPLEDLLQSAV--MDIYHTAQQAGI-DVRltLNAHPVIRTGQplllslLVRNLLDNAIRYSPQGSVVDVT--LNARN-- 382
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 522152058 569 VDVSDQGLGMKEGVRDWANSMMADAPEFDAmalrADSSLGLFVVARLASRLGITVTFDPSRYGGTRATV 637
Cdd:PRK10337 383 FTVRDNGPGVTPEALARIGERFYRPPGQEA----TGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKV 447
|
|
| COG4192 |
COG4192 |
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal ... |
295-577 |
3.77e-05 |
|
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms];
Pssm-ID: 443346 [Multi-domain] Cd Length: 640 Bit Score: 47.37 E-value: 3.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 295 LNQLTIEQADQvSAAAITAGNAQLRNAI-IGSIVALLASLAAIIVAVRVSRSLVDRTLMTRLERLRNDSLDLARNRLPKI 373
Cdd:COG4192 295 LRTQISGLVGN-SREQLVALNQETAQLVqQSGILLLAIALLSLLLAVLINYFYVRRRLVKRLNALSDAMAAIAAGDLDVP 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 374 VgrlksgePVDveaelpkldhGRDEIGQVAEA-----FNTAQLTAVNAAASEAKARSGVH-----NVFLGIAHRNQV--- 440
Cdd:COG4192 374 I-------PVD----------GNDEIGRIARLlrvfrDQAIEKTQELETEIEERKRIEKNlrqtqDELIQAAKMAVVgqt 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 441 ---LVHRQLQILDEMES---------REENSTQL-ASLFQLDHLAARARRttenlIILGGKQPGRRWR---KPVSLMEVL 504
Cdd:COG4192 437 mtsLAHELNQPLNAMSMylfsakkalEQENYAQLpTSLDKIEGLIERMDK-----IIKSLRQFSRKSDtplQPVDLRQVI 511
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 522152058 505 RAAVSETEqySRVQVEQV-----PDVAIVGTAVADTIHLVAELVdNATSFSPPGSQVEVTSRMVARGVVVDVSDQGLG 577
Cdd:COG4192 512 EQAWELVE--SRAKPQQItlhipDDLMVQGDQVLLEQVLVNLLV-NALDAVATQPQISVDLLSNAENLRVAISDNGNG 586
|
|
| PRK10755 |
PRK10755 |
two-component system sensor histidine kinase PmrB; |
516-642 |
2.12e-04 |
|
two-component system sensor histidine kinase PmrB;
Pssm-ID: 236751 [Multi-domain] Cd Length: 356 Bit Score: 44.19 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 516 RVQVEQVPDVAIVGTAVADTIHL---VAELVDNATSFSPPGSQVEVTSRMVARGVVVDVSDQGLGMKEgvrdwanSMMAD 592
Cdd:PRK10755 226 RQQTLLLPESAADITVQGDATLLrllLRNLVENAHRYSPEGSTITIKLSQEDGGAVLAVEDEGPGIDE-------SKCGE 298
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 522152058 593 APE-FDAMALR-ADSSLGLFVVARLAS----RLGITVTFDPSrygGTRATVLIPSN 642
Cdd:PRK10755 299 LSKaFVRMDSRyGGIGLGLSIVSRITQlhhgQFFLQNRQERS---GTRAWVWLPKA 351
|
|
| HATPase_DpiB-CitA-like |
cd16915 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
536-640 |
2.83e-04 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 DpiB, DcuS, and Bacillus subtilis CitS, DctS, and YufL; This family includes histidine kinase-like ATPase domains of Escherichia coli K-12 DpiB and DcuS, and Bacillus subtilis CitS, DctS and MalK histidine kinases (HKs) all of which are two component transduction systems (TCSs). E. coli K-12 DpiB (also known as CitA) is the histidine kinase (HK) of DpiA-DpiB, a two-component signal transduction system (TCS) required for the expression of citrate-specific fermentation genes and genes involved in plasmid inheritance. E. coli K-12 DcuS (also known as YjdH) is the HK of DcuS-DcuR, a TCS that in the presence of the extracellular C4-dicarboxlates, activates the expression of the genes of anaerobic fumarate respiration and of aerobic C4-dicarboxylate uptake. CitS is the HK of Bacillus subtilis CitS-CitT, a TCS which regulates expression of CitM, the Mg-citrate transporter. Bacillus subtilis DctS forms a tripartite sensor unit (DctS/DctA/DctB) for sensing C4 dicarboxylates. Bacillus subtilis MalK (also known as YfuL) is the HK of MalK-MalR (YufL-YufM) a TCS which regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium. Proteins having this DpiB-CitA-like HATPase domain generally have sensor domains such as Cache and PAS, and a histidine kinase A (HisKA)-like SpoOB-type, alpha-helical domain.
Pssm-ID: 340392 [Multi-domain] Cd Length: 104 Bit Score: 40.73 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 536 IHLVAELVDNA----TSFSPPGSQVEVTSRMVARGVVVDVSDQGLGMKEGVRdwansmmadapefDAMALRADSS----- 606
Cdd:cd16915 2 ITIVGNLIDNAldalAATGAPNKQVEVFLRDEGDDLVIEVRDTGPGIAPELR-------------DKVFERGVSTkgqge 68
|
90 100 110
....*....|....*....|....*....|....*...
gi 522152058 607 --LGLFVVARLASRLG--ITVTFDPSryGGTRATVLIP 640
Cdd:cd16915 69 rgIGLALVRQSVERLGgsITVESEPG--GGTTFSIRIP 104
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
645-769 |
4.40e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 43.71 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 645 ADPNASDPAMEAPELAQVGASASESAPVARPVPEAAEPAPRPFPARPLPSPVPREPQHRAEPDAHSPVSGTLDVSGTPQA 724
Cdd:PRK12323 461 AARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFET 540
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 522152058 725 PATAQVPPHVPAA------------PRAAEPDLSELRGDDRPRLPRRQPQQNLVAQL 769
Cdd:PRK12323 541 LAPAPAAAPAPRAaaatepvvaprpPRASASGLPDMFDGDWPALAARLPVRGLAQQL 597
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
645-761 |
9.31e-04 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 42.45 E-value: 9.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 645 ADPNASDPAMEAPELAQVGASASESAPVARPVPEAAEPAPRPFPARPLPSPVPR---EPQHRAEPDAHSPVSGTLDVSGT 721
Cdd:NF040712 212 ARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAApaaEPDEATRDAGEPPAPGAAETPEA 291
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 522152058 722 PQAPATAQVPPHVPAAPRAAEPDLSELRGDDRPRLPRRQP 761
Cdd:NF040712 292 AEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPKRRRRRA 331
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
625-795 |
1.02e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 42.56 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 625 FDPSRYGGTRATvliPSNHLADPNASDPAMEAPELAQVGASASESAPVARPVPEAAEPAPRPFPARPLPSPVPREPQHRA 704
Cdd:PRK12323 363 FRPGQSGGGAGP---ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQA 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 705 EPDAHSPVSGTldVSGTPQAPATAQVPPHVPAAPRAAEpdlselrgdDRPRLPRRQPQQNLVAQLQDDPGAEEVDVTNAG 784
Cdd:PRK12323 440 SARGPGGAPAP--APAPAAAPAAAARPAAAGPRPVAAA---------AAAAPARAAPAAAPAPADDDPPPWEELPPEFAS 508
|
170
....*....|.
gi 522152058 785 ETTARTLMAFA 795
Cdd:PRK12323 509 PAPAQPDAAPA 519
|
|
| HATPase_EnvZ-like |
cd16950 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
538-640 |
1.67e-03 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli EnvZ and Pseudomonas aeruginosa BfmS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Escherichia coli EnvZ of the EnvZ-OmpR two-component regulatory system (TCS), which functions in osmoregulation. It also contains the HATPase domain of Pseudomonas aeruginosa BfmS, the HK of the BfmSR TCS, which functions in the regulation of the rhl quorum-sensing system and bacterial virulence in P. aeruginosa. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and a HAMP sensor domain; some also contain a periplasmic domain.
Pssm-ID: 340426 [Multi-domain] Cd Length: 101 Bit Score: 38.58 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 538 LVAELVDNATSFSppGSQVEVTSRMVARGVVVDVSDQGLGMKEGVRDwanSMMADAPEFDAMALRADSSLGLFVVARLAS 617
Cdd:cd16950 4 VLSNLVDNALRYG--GGWVEVSSDGEGNRTRIQVLDNGPGIAPEEVD---ELFQPFYRGDNARGTSGTGLGLAIVQRISD 78
|
90 100
....*....|....*....|...
gi 522152058 618 RLGITVTFDPSRYGGTRATVLIP 640
Cdd:cd16950 79 AHGGSLTLANRAGGGLCARIELP 101
|
|
| dpiB |
PRK15053 |
sensor histidine kinase DpiB; Provisional |
538-646 |
1.72e-03 |
|
sensor histidine kinase DpiB; Provisional
Pssm-ID: 185013 [Multi-domain] Cd Length: 545 Bit Score: 41.74 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 538 LVAELVDNATSFS---PPGS-QVEVTSRMVARGVVVDVSDQGLGMKEGVRD----WANSMMADAPefdamalrADSSLGL 609
Cdd:PRK15053 436 IVGNLLDNAFEASlrsDEGNkIVELFLSDEGDDVVIEVADQGCGVPESLRDkifeQGVSTRADEP--------GEHGIGL 507
|
90 100 110
....*....|....*....|....*....|....*..
gi 522152058 610 FVVARLASRLGITVTFDPSRYGGTRATVLIPSNHLAD 646
Cdd:PRK15053 508 YLIASYVTRCGGVITLEDNDPCGTLFSIFIPKVKPND 544
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
321-424 |
1.73e-03 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 41.49 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 321 AIIGSIVALLASLAAIIVAVRVSRSLVD--RTLMTRLERLRNDSLDlarNRLPkivgrlksgepvdveaelpklDHGRDE 398
Cdd:COG5000 8 LLLLLLIALLLLLLALWLALLLARRLTRplRRLAEATRAVAAGDLS---VRLP---------------------VTGDDE 63
|
90 100
....*....|....*....|....*...
gi 522152058 399 IGQVAEAFN--TAQLTAVNAAASEAKAR 424
Cdd:COG5000 64 IGELARAFNrmTDQLKEQREELEERRRY 91
|
|
| RsbW |
COG2172 |
Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]; |
516-637 |
2.49e-03 |
|
Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms];
Pssm-ID: 441775 [Multi-domain] Cd Length: 127 Bit Score: 38.74 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 516 RVQVEQVPDVAIVGTAVADTIHL-VAELVDNA---TSFSPPGSQVEVTSRMVARGVVVDVSDQGLGMKegvrdwansmMA 591
Cdd:COG2172 15 RRAVRALLRELGLDEDDADDLVLaVSEAVTNAvrhAYGGDPDGPVEVELELDPDGLEIEVRDEGPGFD----------PE 84
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 522152058 592 DAPefDAMALRADSSLGLFVVARLASRLGITvtfdpSRYGGTRATV 637
Cdd:COG2172 85 DLP--DPYSTLAEGGRGLFLIRRLMDEVEYE-----SDPGGTTVRL 123
|
|
| DUF4813 |
pfam16072 |
Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. ... |
666-743 |
2.67e-03 |
|
Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 345 and 672 amino acids in length.
Pssm-ID: 435117 [Multi-domain] Cd Length: 288 Bit Score: 40.51 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 666 ASESAPVARPVPEAAEPAPRPFParplPSPVPREPQHRAEPDAHSPVSGTLDVSGTPQ------APATAQVPPHVPAAPR 739
Cdd:pfam16072 169 AAPAAPAYPVAPAAYPAQAPAAA----PAPAPGAPQTPLAPLNPVAAAPAAAAGAAAApvvaaaAPAAAAPPPPAPAAPP 244
|
....
gi 522152058 740 AAEP 743
Cdd:pfam16072 245 ADAA 248
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
625-748 |
2.73e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 41.24 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 625 FDPSryGGTRATVLIPSNHLADPNASDPAmEAPELAQVGASASESAP-----VARPVPEAAEPAPRPFPARPLPSPVPRE 699
Cdd:PRK14951 364 FKPA--AAAEAAAPAEKKTPARPEAAAPA-AAPVAQAAAAPAPAAAPaaaasAPAAPPAAAPPAPVAAPAAAAPAAAPAA 440
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 522152058 700 PQHRAEPDAHSPVSGTLDVSGTPQA----PATAQVPPHVPAAPRAAEPDLSEL 748
Cdd:PRK14951 441 APAAVALAPAPPAQAAPETVAIPVRvapePAVASAAPAPAAAPAAARLTPTEE 493
|
|
| COG3920 |
COG3920 |
Two-component sensor histidine kinase, HisKA and HATPase domains [Signal transduction ... |
538-646 |
5.47e-03 |
|
Two-component sensor histidine kinase, HisKA and HATPase domains [Signal transduction mechanisms];
Pssm-ID: 443125 [Multi-domain] Cd Length: 495 Bit Score: 40.27 E-value: 5.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 538 LVAELVDNATSFSPPGSQ---VEVTSRMVARGVVVDVSDQGLGMKEGVrdwansmmadapefdamALRADSSLGLFVVAR 614
Cdd:COG3920 403 ILNELVTNALKHAFLSGEggrIRVSWRREDGRLRLTVSDNGVGLPEDV-----------------DPPARKGLGLRLIRA 465
|
90 100 110
....*....|....*....|....*....|..
gi 522152058 615 LASRLGITVTFDPSryGGTRATVLIPSNHLAD 646
Cdd:COG3920 466 LVRQLGGTLELDRP--EGTRVRITFPLAELAA 495
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
611-784 |
6.32e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 39.97 E-value: 6.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 611 VVARLASRLGITVTFDPSRYGGTRATVLIPSNHLADPNASDPAmeapelaqvGASASESAPVARPVPEAAEPAPRPFPAR 690
Cdd:PRK07764 574 LAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPA---------APAAPAAPAAPAPAGAAAAPAEASAAPA 644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 691 PLPSPVPREPQHRAEPDAHSPVSGTLDVSGTPQAPATAQVPPHVPAAPRAAEPDLSELRGDDRPRLPRRQPQQNLVAQLQ 770
Cdd:PRK07764 645 PGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQA 724
|
170
....*....|....
gi 522152058 771 DDPGAEEVDVTNAG 784
Cdd:PRK07764 725 AQGASAPSPAADDP 738
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
495-640 |
6.37e-03 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 39.95 E-value: 6.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 495 RKPVSLMEVLRAAV---SETEQYSRVQVE-QVPDVAIVGTAVADTIH-LVAELVDNATSFSPPGSQVEVTSRMVARGVVV 569
Cdd:COG5000 273 LEPVDLNELLREVLalyEPALKEKDIRLElDLDPDLPEVLADRDQLEqVLINLLKNAIEAIEEGGEIEVSTRREDGRVRI 352
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 522152058 570 DVSDQGLGMKEGVRDWAnsmmadapeFDA-MALRADSS-LGLFVVARLASRLGITVTFDPSRYGGTRATVLIP 640
Cdd:COG5000 353 EVSDNGPGIPEEVLERI---------FEPfFTTKPKGTgLGLAIVKKIVEEHGGTIELESRPGGGTTFTIRLP 416
|
|
| PHA03369 |
PHA03369 |
capsid maturational protease; Provisional |
632-796 |
9.88e-03 |
|
capsid maturational protease; Provisional
Pssm-ID: 223061 [Multi-domain] Cd Length: 663 Bit Score: 39.60 E-value: 9.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 632 GTRATVLIPSNhLADPNASDPAMEAPELAQVGASASESAPVARPVPEAAEPAPRPFPARPLPSPVPREPQHRAEPDAHSP 711
Cdd:PHA03369 340 GLKAHNEILKT-ASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSP 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152058 712 VSGTLDVSGTPQAPATAqVPPHvPAAPRAAEPDLSEL--------RGDDRPRLPRRQPQQNLVAQLQDDPGAEEVDVTNA 783
Cdd:PHA03369 419 YNPQSPGTSYGPEPVGP-VPPQ-PTNPYVMPISMANMvypghpqeHGHERKRKRGGELKEELIETLKLVKKLKEEQESLA 496
|
170
....*....|...
gi 522152058 784 GETTARTLMAFAK 796
Cdd:PHA03369 497 KELEATAHKSEIK 509
|
|
| |
