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Conserved domains on  [gi|522152555|ref|WP_020663763|]
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SdrD B-like domain-containing protein [Amycolatopsis benzoatilytica]

Protein Classification

SdrD_B domain-containing protein( domain architecture ID 12182936)

SdrD_B domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SdrD_B pfam17210
SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This ...
 325-439 3.38e-32

SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.


:

Pssm-ID: 435789 [Multi-domain]  Cd Length: 112  Bit Score: 118.47  E-value: 3.38e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152555  325 GKIGDRAWKDLNRNGLQDDDEPGYPDLPVTLKDGAGGTVGTARTNADGMYLFDQRKDGTYQVCFDVsslPDGLTVTPRDA 404
Cdd:pfam17210   1 ASIGDFVWEDANKNGIQDAGEPGISGVTVTLYDANGTVVGTTTTDANGKYLFTNLAPGTYYVEFTA---PAGYTFTPQNQ 77

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 522152555  405 GE-PGLDSAVDPATGCTSPFTLgGKSRERMDLDIGL 439
Cdd:pfam17210  78 GSdDALDSDADPATGLTATVTL-ASGESDLTIDAGL 112
 
Name Accession Description Interval E-value
SdrD_B pfam17210
SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This ...
 325-439 3.38e-32

SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.


Pssm-ID: 435789 [Multi-domain]  Cd Length: 112  Bit Score: 118.47  E-value: 3.38e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152555  325 GKIGDRAWKDLNRNGLQDDDEPGYPDLPVTLKDGAGGTVGTARTNADGMYLFDQRKDGTYQVCFDVsslPDGLTVTPRDA 404
Cdd:pfam17210   1 ASIGDFVWEDANKNGIQDAGEPGISGVTVTLYDANGTVVGTTTTDANGKYLFTNLAPGTYYVEFTA---PAGYTFTPQNQ 77

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 522152555  405 GE-PGLDSAVDPATGCTSPFTLgGKSRERMDLDIGL 439
Cdd:pfam17210  78 GSdDALDSDADPATGLTATVTL-ASGESDLTIDAGL 112
 
Name Accession Description Interval E-value
SdrD_B pfam17210
SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This ...
 325-439 3.38e-32

SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.


Pssm-ID: 435789 [Multi-domain]  Cd Length: 112  Bit Score: 118.47  E-value: 3.38e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522152555  325 GKIGDRAWKDLNRNGLQDDDEPGYPDLPVTLKDGAGGTVGTARTNADGMYLFDQRKDGTYQVCFDVsslPDGLTVTPRDA 404
Cdd:pfam17210   1 ASIGDFVWEDANKNGIQDAGEPGISGVTVTLYDANGTVVGTTTTDANGKYLFTNLAPGTYYVEFTA---PAGYTFTPQNQ 77

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 522152555  405 GE-PGLDSAVDPATGCTSPFTLgGKSRERMDLDIGL 439
Cdd:pfam17210  78 GSdDALDSDADPATGLTATVTL-ASGESDLTIDAGL 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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