|
Name |
Accession |
Description |
Interval |
E-value |
| pilus_ancill_1 |
NF033396 |
pilus ancillary protein 1; |
13-743 |
0e+00 |
|
pilus ancillary protein 1;
Pssm-ID: 380246 [Multi-domain] Cd Length: 737 Bit Score: 1398.85 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 13 NNKRRQTTIGLLKVFLTFVALIGIVGFSIRAFGAEEQ----SVPNKQSSVQDYPWYGYDSYSKGYPDYSPLKTYHNLKVN 88
Cdd:NF033396 1 NRKPKQLTVTLVGVFLMFLTLVSSMRGAQSIFGEEKRieevSVPKIKSPDDDYPWYGYDSYDSSHPYYEPFKVAHDLKVN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 89 LEGSKDYQTYCFNLTKHFPSKLDSVKSQWYKKLEGNDQTFRNYASQIRNEQ-NISQKILDVLYNGYPNNANGLMNELEPL 167
Cdd:NF033396 81 LNGSKSYQVYCFNITSHYPSKKNSVSKQWFKRVDGTGDVFTSYAKTPRIEGeELNQKLLSVMYNAYPNNANGIMKGIEPL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 168 NAIIVTQNAIWYYSDSAQINPDESFKTEAKSNGINDQQLGLMRKALKELIDPNLGSKYSNKTPSGYRLNVFESHDKTFQN 247
Cdd:NF033396 161 NAILVTQNAVWYYSDSSQINPDELFKSEAKSNKINDQQLGLMREALSELIDPNLGEKYSNKTPSGYRLNIFESHDKSFQN 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 248 LLSAEYVPDTPPKPGEEPPAKTEKTSVIIRKYAEGDYSKLLEGATLKLSQIEGSGFQEKDFQSNSLGETVELPNGTYTLT 327
Cdd:NF033396 241 LLSAEYVPDTPPKPGEEPPAKTEKTSVIIRKYAEGDYSKLLEGATLKLTQIEGSGFQEKIFQSNSSGETVELPNGTYTLT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 328 ETLSPDGYKIAEPIKFRVENKKVFIVQKDGSQVENPNKEVAEPYSVEAYNDFMDEEVLS-GFTPYGKFYYAKNKDKSSQV 406
Cdd:NF033396 321 ETKSPDGYKIAEPIKFRVKNGKVFIVQKDGSQVENPNKEVAEPYSVEAYNDFSEDGYLSsGFRPYGKFYYAKNKDGSSQV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 407 VYCFNADLHSPPDSYDSGETINPDTSTMKEVKYTHTAGSDLFKYALRPRDTNPEDFLKHIKKVIEKGYKKKGDSYNGLTE 486
Cdd:NF033396 401 VYCFNADLHSPPDSYDGGGTIDPDISTMKEVKYTHVAGSDLFKYALRPRDTNPEDFLKHIKKVIEKGYKKKGDSYNGLTE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 487 TQFRAATQLAIYYFTDSADLKTLKTYNNGKGYHGFESMDEKTLAVTKELITYAQNGSAPQLTNLDFFVPNNSKYQSLIGT 566
Cdd:NF033396 481 TQFRAATQLAIYYFTDSADLETLKTYNNNKGYHGFEDMDEATLAVTKELIAYAQNDEAPQLTNLDFFVPNNSKYQSLIGT 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 567 EYHPDDLVDVIRMEDKKQEVIPVTHSLTVKKTVVGELGDKTKGFQFELELKDKTGQPIVNTLKTNNQDLVAKDGKYSFNL 646
Cdd:NF033396 561 EYHPDDLVDVIRMEDKKQEVIPVTHSLTVKKTVVGELGDKTKGFQFELELKDKTGQPIVNTLKTNNQDLVAKDGKYSFNL 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 647 KHGDTIRIEGLPTGYSYTLKETEAKDYIVTVDNKVSQEAQSVGKDITEDKKVTFENRKDLVPPTGLTTDGAIYLWLLLLV 726
Cdd:NF033396 641 KHGDTIRIEGLPTGYSYTLKETEAKDYIVTVDNKVSQEAQSTKASVTEDKTVTFENRKDLVPPTGLTTDGAIYLWLLLLV 720
|
730
....*....|....*..
gi 553746391 727 PLGLLVWLIGRKGLKND 743
Cdd:NF033396 721 PLGLWVWLIGRKGLKND 737
|
|
| fibronec_SfbI |
NF033395 |
fibronectin-binding protein PrtF1/SfbI; PrtF1/SfbI is a fibronectin-binding protein a ... |
12-265 |
3.09e-99 |
|
fibronectin-binding protein PrtF1/SfbI; PrtF1/SfbI is a fibronectin-binding protein a C-terminal region LPXTG region that mediates processing by sortase and covalent attachment to the cell wall. Near the N-terminus is a TED domain, which includes a Cys residue that forms a covalent thioester bond.
Pssm-ID: 468012 [Multi-domain] Cd Length: 555 Bit Score: 317.30 E-value: 3.09e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 12 ANNKR-RQTTIGLLKVFLTFVALIGIVGFSIRAFGAEEQSVPNKQSSVQDYPWYGYDSYSKGYPdysplkTYHNLKVNLE 90
Cdd:NF033395 15 AHTKRkRRFAVTLVGVFFMLLACAGAIGFGQVAYAADEKTVPNFKSPNPEFPWYGYDAYRGAFL------RYHDLKVNLN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 91 GSKDYQTYCFNLTKHFPSKLDSVKSQWYKKLEGNDQTFRNYASQIR-NEQNISQKILDVLYNGYPNNANGLMNELEPLNA 169
Cdd:NF033395 89 GSKEYQVYCFNLKKFEPRKETSSDKNWYKKLEGTAETFKKYAMNPRvGGEELEKNILSVMYNGYPNDGNGIMKGLEPLNA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 170 IIVTQNAIWYYSDSAQINPDESFKTEAKSNGINDQQLGLMRKALKELIDPNLGSKYSNKTPSGYRLNVFESHDKTFQNLL 249
Cdd:NF033395 169 ILVTQNAVWYYSDSSPYDIETLWESEAKEGKISESQVTLMREALKKLIDPDLEETLVKKVPSNYKLNIFESSDKSYQNLL 248
|
250
....*....|....*.
gi 553746391 250 SAEYVPDTPPKPGEEP 265
Cdd:NF033395 249 SAEYVPDDPPKPGDTS 264
|
|
| surf_Nterm_1 |
NF012162 |
surface-anchored protein thioester-forming domain; This model describes a conserved region, ... |
20-252 |
2.54e-57 |
|
surface-anchored protein thioester-forming domain; This model describes a conserved region, fairly rich in insertions and deletions, located just past the signal peptide region in long, variable, and typically highly repetitive and sortase-dependent surface proteins. Members are found in a broad range of taxa, including many strains of Streptococcus pneumoniae. A conserved Cys forms a thioester bond, often to a host protein for covalent attachment.
Pssm-ID: 467950 [Multi-domain] Cd Length: 234 Bit Score: 194.99 E-value: 2.54e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 20 TIGLLKVFLTFVALIGIVGFSIRAFGAEEQSVPNKQSSVQ-DYPWYGYDSYSKGYpdysplKTYHNLKV--NLEGSKDYQ 96
Cdd:NF012162 1 ILTLVVVFLMLLALAGSIIFGSLAYAADEKGFPNDAKGVSpEGKYYGYDKYGKLY------TTYHRLRVveNLEGSDDYQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 97 TYCFNLTKHFPSKLDSVKSQWYKKLEGNDQ-TFRNYA------SQIRNEQNISQKILDVLYNGYPNNANGLMNE--LEPL 167
Cdd:NF012162 75 AFCFNLKKKFPSYDDSSVKKWYKKLLGSDKeTFKKYArdprrdGTISNPNELWDKLRKVIYNGYPKDPTDIMGRsgLTPL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 168 NAIIVTQNAIWYYSDSAQI-NPDESFKTEAKSNGINDQQLgLMRKALKELIDPNlgskysnktpSGYRLNVFES----HD 242
Cdd:NF012162 155 NFINVTQNAIWYYTDGSKVsKDDNSYEYEAQNSQSQEQLE-LMREALKKLIDPN----------SDFELRIYKPqdvgGQ 223
|
250
....*....|
gi 553746391 243 KTFQNLLSAE 252
Cdd:NF012162 224 KGYQALLSGR 233
|
|
| TQXA_dom |
TIGR03934 |
TQXA domain; This model describes a domain of about 40 residues with an invariant TQ dipeptide ... |
144-185 |
3.07e-14 |
|
TQXA domain; This model describes a domain of about 40 residues with an invariant TQ dipeptide in an almost invariant TQxA[VI]W motif. This domain occurs in surface-expressed proteins of Gram-positive bacteria, many of which are anchored by LPXTG-containing sortase target domains. Numerous members of this family have domains pfam05738 (Cna protein B-type domain) and pfam08341 (fibronectin-binding protein signal sequence).
Pssm-ID: 274864 [Multi-domain] Cd Length: 42 Bit Score: 67.27 E-value: 3.07e-14
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 553746391 144 KILDVLYNGYPNNANGLMNELEPLNAIIVTQNAIWYYSDSAQ 185
Cdd:TIGR03934 1 KILWILANGYPNKSNGELGGLTEEEARAVTQLAIWYFTDGLD 42
|
|
| TED |
pfam08341 |
Thioester domain; This domain is found near the N-terminus of a variety of bacterial surface ... |
97-219 |
9.11e-11 |
|
Thioester domain; This domain is found near the N-terminus of a variety of bacterial surface proteins and pili. This domain contains an unusual covalent ester bond between a conserved cysteine and glutamine residue.
Pssm-ID: 462437 [Multi-domain] Cd Length: 105 Bit Score: 59.17 E-value: 9.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 97 TYCFNLTKHFPSKLDSVKSQWYKKLEGNDQTfrnyasqirneqnisQKILDVLYNGYPNNANGLMNE--LEPLNAIIVTQ 174
Cdd:pfam08341 2 AYCIEPGKGFPSGGDGTASSETRLTLYKDNA---------------DKINWILYNGYPNKSGLSEELggLTDDDAYAATQ 66
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 553746391 175 NAIWYYSDSAQINPDESFKTEAKSNgindqqlglMRKALKELIDP 219
Cdd:pfam08341 67 AAIWHFTDGVDGASDGDGGTERDDD---------VKKLYDYLIGN 102
|
|
| surf_Nterm_1 |
NF012162 |
surface-anchored protein thioester-forming domain; This model describes a conserved region, ... |
406-567 |
6.51e-05 |
|
surface-anchored protein thioester-forming domain; This model describes a conserved region, fairly rich in insertions and deletions, located just past the signal peptide region in long, variable, and typically highly repetitive and sortase-dependent surface proteins. Members are found in a broad range of taxa, including many strains of Streptococcus pneumoniae. A conserved Cys forms a thioester bond, often to a host protein for covalent attachment.
Pssm-ID: 467950 [Multi-domain] Cd Length: 234 Bit Score: 45.14 E-value: 6.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 406 VVYCFNADLHSPP--DSYDSGEtinpdtstmkevkYTHTAGSD---LFKYALRPRDT----NPEDFLKHIKKVIEKGYKK 476
Cdd:NF012162 74 QAFCFNLKKKFPSydDSSVKKW-------------YKKLLGSDketFKKYARDPRRDgtisNPNELWDKLRKVIYNGYPK 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 477 KGD---SYNGLTETQFRAATQLAIYYFTDSA---DLKTLKTYNNGKGyhgfesmdEKTLAVtkELITYAQNGSAPQLTN- 549
Cdd:NF012162 141 DPTdimGRSGLTPLNFINVTQNAIWYYTDGSkvsKDDNSYEYEAQNS--------QSQEQL--ELMREALKKLIDPNSDf 210
|
170 180
....*....|....*....|...
gi 553746391 550 -LDFFVP----NNSKYQSLIGTE 567
Cdd:NF012162 211 eLRIYKPqdvgGQKGYQALLSGR 233
|
|
| ClfA |
COG4932 |
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing ... |
228-347 |
7.42e-05 |
|
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443959 [Multi-domain] Cd Length: 689 Bit Score: 46.12 E-value: 7.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 228 KTPSGYRLNvfeshDKTFQNLLSAEYVPDTPPKPGEEPPaktEKTSVIIRKYAEGDYSKLLEGATLKLSQIEGSGFQEKD 307
Cdd:COG4932 322 KAPAGYDLD-----GEAVKVTITAGQTTTVTVTNGNNEV---KTGSVTLTKVDADDGEAPLAGAEFTLTDADGTVVATIT 393
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 553746391 308 FQSNSLGETVELPNGTYTLTETLSPDGYKI-AEPIKFRVEN 347
Cdd:COG4932 394 TDADGTASFKGLAPGTYTLTETKAPEGYTLdSTPITVTVTD 434
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| pilus_ancill_1 |
NF033396 |
pilus ancillary protein 1; |
13-743 |
0e+00 |
|
pilus ancillary protein 1;
Pssm-ID: 380246 [Multi-domain] Cd Length: 737 Bit Score: 1398.85 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 13 NNKRRQTTIGLLKVFLTFVALIGIVGFSIRAFGAEEQ----SVPNKQSSVQDYPWYGYDSYSKGYPDYSPLKTYHNLKVN 88
Cdd:NF033396 1 NRKPKQLTVTLVGVFLMFLTLVSSMRGAQSIFGEEKRieevSVPKIKSPDDDYPWYGYDSYDSSHPYYEPFKVAHDLKVN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 89 LEGSKDYQTYCFNLTKHFPSKLDSVKSQWYKKLEGNDQTFRNYASQIRNEQ-NISQKILDVLYNGYPNNANGLMNELEPL 167
Cdd:NF033396 81 LNGSKSYQVYCFNITSHYPSKKNSVSKQWFKRVDGTGDVFTSYAKTPRIEGeELNQKLLSVMYNAYPNNANGIMKGIEPL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 168 NAIIVTQNAIWYYSDSAQINPDESFKTEAKSNGINDQQLGLMRKALKELIDPNLGSKYSNKTPSGYRLNVFESHDKTFQN 247
Cdd:NF033396 161 NAILVTQNAVWYYSDSSQINPDELFKSEAKSNKINDQQLGLMREALSELIDPNLGEKYSNKTPSGYRLNIFESHDKSFQN 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 248 LLSAEYVPDTPPKPGEEPPAKTEKTSVIIRKYAEGDYSKLLEGATLKLSQIEGSGFQEKDFQSNSLGETVELPNGTYTLT 327
Cdd:NF033396 241 LLSAEYVPDTPPKPGEEPPAKTEKTSVIIRKYAEGDYSKLLEGATLKLTQIEGSGFQEKIFQSNSSGETVELPNGTYTLT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 328 ETLSPDGYKIAEPIKFRVENKKVFIVQKDGSQVENPNKEVAEPYSVEAYNDFMDEEVLS-GFTPYGKFYYAKNKDKSSQV 406
Cdd:NF033396 321 ETKSPDGYKIAEPIKFRVKNGKVFIVQKDGSQVENPNKEVAEPYSVEAYNDFSEDGYLSsGFRPYGKFYYAKNKDGSSQV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 407 VYCFNADLHSPPDSYDSGETINPDTSTMKEVKYTHTAGSDLFKYALRPRDTNPEDFLKHIKKVIEKGYKKKGDSYNGLTE 486
Cdd:NF033396 401 VYCFNADLHSPPDSYDGGGTIDPDISTMKEVKYTHVAGSDLFKYALRPRDTNPEDFLKHIKKVIEKGYKKKGDSYNGLTE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 487 TQFRAATQLAIYYFTDSADLKTLKTYNNGKGYHGFESMDEKTLAVTKELITYAQNGSAPQLTNLDFFVPNNSKYQSLIGT 566
Cdd:NF033396 481 TQFRAATQLAIYYFTDSADLETLKTYNNNKGYHGFEDMDEATLAVTKELIAYAQNDEAPQLTNLDFFVPNNSKYQSLIGT 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 567 EYHPDDLVDVIRMEDKKQEVIPVTHSLTVKKTVVGELGDKTKGFQFELELKDKTGQPIVNTLKTNNQDLVAKDGKYSFNL 646
Cdd:NF033396 561 EYHPDDLVDVIRMEDKKQEVIPVTHSLTVKKTVVGELGDKTKGFQFELELKDKTGQPIVNTLKTNNQDLVAKDGKYSFNL 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 647 KHGDTIRIEGLPTGYSYTLKETEAKDYIVTVDNKVSQEAQSVGKDITEDKKVTFENRKDLVPPTGLTTDGAIYLWLLLLV 726
Cdd:NF033396 641 KHGDTIRIEGLPTGYSYTLKETEAKDYIVTVDNKVSQEAQSTKASVTEDKTVTFENRKDLVPPTGLTTDGAIYLWLLLLV 720
|
730
....*....|....*..
gi 553746391 727 PLGLLVWLIGRKGLKND 743
Cdd:NF033396 721 PLGLWVWLIGRKGLKND 737
|
|
| fibronec_SfbI |
NF033395 |
fibronectin-binding protein PrtF1/SfbI; PrtF1/SfbI is a fibronectin-binding protein a ... |
12-265 |
3.09e-99 |
|
fibronectin-binding protein PrtF1/SfbI; PrtF1/SfbI is a fibronectin-binding protein a C-terminal region LPXTG region that mediates processing by sortase and covalent attachment to the cell wall. Near the N-terminus is a TED domain, which includes a Cys residue that forms a covalent thioester bond.
Pssm-ID: 468012 [Multi-domain] Cd Length: 555 Bit Score: 317.30 E-value: 3.09e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 12 ANNKR-RQTTIGLLKVFLTFVALIGIVGFSIRAFGAEEQSVPNKQSSVQDYPWYGYDSYSKGYPdysplkTYHNLKVNLE 90
Cdd:NF033395 15 AHTKRkRRFAVTLVGVFFMLLACAGAIGFGQVAYAADEKTVPNFKSPNPEFPWYGYDAYRGAFL------RYHDLKVNLN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 91 GSKDYQTYCFNLTKHFPSKLDSVKSQWYKKLEGNDQTFRNYASQIR-NEQNISQKILDVLYNGYPNNANGLMNELEPLNA 169
Cdd:NF033395 89 GSKEYQVYCFNLKKFEPRKETSSDKNWYKKLEGTAETFKKYAMNPRvGGEELEKNILSVMYNGYPNDGNGIMKGLEPLNA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 170 IIVTQNAIWYYSDSAQINPDESFKTEAKSNGINDQQLGLMRKALKELIDPNLGSKYSNKTPSGYRLNVFESHDKTFQNLL 249
Cdd:NF033395 169 ILVTQNAVWYYSDSSPYDIETLWESEAKEGKISESQVTLMREALKKLIDPDLEETLVKKVPSNYKLNIFESSDKSYQNLL 248
|
250
....*....|....*.
gi 553746391 250 SAEYVPDTPPKPGEEP 265
Cdd:NF033395 249 SAEYVPDDPPKPGDTS 264
|
|
| surf_Nterm_1 |
NF012162 |
surface-anchored protein thioester-forming domain; This model describes a conserved region, ... |
20-252 |
2.54e-57 |
|
surface-anchored protein thioester-forming domain; This model describes a conserved region, fairly rich in insertions and deletions, located just past the signal peptide region in long, variable, and typically highly repetitive and sortase-dependent surface proteins. Members are found in a broad range of taxa, including many strains of Streptococcus pneumoniae. A conserved Cys forms a thioester bond, often to a host protein for covalent attachment.
Pssm-ID: 467950 [Multi-domain] Cd Length: 234 Bit Score: 194.99 E-value: 2.54e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 20 TIGLLKVFLTFVALIGIVGFSIRAFGAEEQSVPNKQSSVQ-DYPWYGYDSYSKGYpdysplKTYHNLKV--NLEGSKDYQ 96
Cdd:NF012162 1 ILTLVVVFLMLLALAGSIIFGSLAYAADEKGFPNDAKGVSpEGKYYGYDKYGKLY------TTYHRLRVveNLEGSDDYQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 97 TYCFNLTKHFPSKLDSVKSQWYKKLEGNDQ-TFRNYA------SQIRNEQNISQKILDVLYNGYPNNANGLMNE--LEPL 167
Cdd:NF012162 75 AFCFNLKKKFPSYDDSSVKKWYKKLLGSDKeTFKKYArdprrdGTISNPNELWDKLRKVIYNGYPKDPTDIMGRsgLTPL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 168 NAIIVTQNAIWYYSDSAQI-NPDESFKTEAKSNGINDQQLgLMRKALKELIDPNlgskysnktpSGYRLNVFES----HD 242
Cdd:NF012162 155 NFINVTQNAIWYYTDGSKVsKDDNSYEYEAQNSQSQEQLE-LMREALKKLIDPN----------SDFELRIYKPqdvgGQ 223
|
250
....*....|
gi 553746391 243 KTFQNLLSAE 252
Cdd:NF012162 224 KGYQALLSGR 233
|
|
| TQXA_dom |
TIGR03934 |
TQXA domain; This model describes a domain of about 40 residues with an invariant TQ dipeptide ... |
144-185 |
3.07e-14 |
|
TQXA domain; This model describes a domain of about 40 residues with an invariant TQ dipeptide in an almost invariant TQxA[VI]W motif. This domain occurs in surface-expressed proteins of Gram-positive bacteria, many of which are anchored by LPXTG-containing sortase target domains. Numerous members of this family have domains pfam05738 (Cna protein B-type domain) and pfam08341 (fibronectin-binding protein signal sequence).
Pssm-ID: 274864 [Multi-domain] Cd Length: 42 Bit Score: 67.27 E-value: 3.07e-14
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 553746391 144 KILDVLYNGYPNNANGLMNELEPLNAIIVTQNAIWYYSDSAQ 185
Cdd:TIGR03934 1 KILWILANGYPNKSNGELGGLTEEEARAVTQLAIWYFTDGLD 42
|
|
| TQXA_dom |
TIGR03934 |
TQXA domain; This model describes a domain of about 40 residues with an invariant TQ dipeptide ... |
465-505 |
4.75e-11 |
|
TQXA domain; This model describes a domain of about 40 residues with an invariant TQ dipeptide in an almost invariant TQxA[VI]W motif. This domain occurs in surface-expressed proteins of Gram-positive bacteria, many of which are anchored by LPXTG-containing sortase target domains. Numerous members of this family have domains pfam05738 (Cna protein B-type domain) and pfam08341 (fibronectin-binding protein signal sequence).
Pssm-ID: 274864 [Multi-domain] Cd Length: 42 Bit Score: 58.03 E-value: 4.75e-11
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 553746391 465 HIKKVIEKGYKKKGDS-YNGLTETQFRAATQLAIYYFTDSAD 505
Cdd:TIGR03934 1 KILWILANGYPNKSNGeLGGLTEEEARAVTQLAIWYFTDGLD 42
|
|
| TED |
pfam08341 |
Thioester domain; This domain is found near the N-terminus of a variety of bacterial surface ... |
97-219 |
9.11e-11 |
|
Thioester domain; This domain is found near the N-terminus of a variety of bacterial surface proteins and pili. This domain contains an unusual covalent ester bond between a conserved cysteine and glutamine residue.
Pssm-ID: 462437 [Multi-domain] Cd Length: 105 Bit Score: 59.17 E-value: 9.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 97 TYCFNLTKHFPSKLDSVKSQWYKKLEGNDQTfrnyasqirneqnisQKILDVLYNGYPNNANGLMNE--LEPLNAIIVTQ 174
Cdd:pfam08341 2 AYCIEPGKGFPSGGDGTASSETRLTLYKDNA---------------DKINWILYNGYPNKSGLSEELggLTDDDAYAATQ 66
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 553746391 175 NAIWYYSDSAQINPDESFKTEAKSNgindqqlglMRKALKELIDP 219
Cdd:pfam08341 67 AAIWHFTDGVDGASDGDGGTERDDD---------VKKLYDYLIGN 102
|
|
| TED |
pfam08341 |
Thioester domain; This domain is found near the N-terminus of a variety of bacterial surface ... |
406-541 |
3.56e-07 |
|
Thioester domain; This domain is found near the N-terminus of a variety of bacterial surface proteins and pili. This domain contains an unusual covalent ester bond between a conserved cysteine and glutamine residue.
Pssm-ID: 462437 [Multi-domain] Cd Length: 105 Bit Score: 49.16 E-value: 3.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 406 VVYCFNADLHSPPDSYDSGETINpdtstmkevkythtagsdlfkyalrpRDTNPEDFLKHIKKVIEKGYKKKGDS---YN 482
Cdd:pfam08341 1 PAYCIEPGKGFPSGGDGTASSET--------------------------RLTLYKDNADKINWILYNGYPNKSGLseeLG 54
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 553746391 483 GLTETQFRAATQLAIYYFTDSADLKTLKTYNNgkgyhgfeSMDEKTLAVTKELITYAQN 541
Cdd:pfam08341 55 GLTDDDAYAATQAAIWHFTDGVDGASDGDGGT--------ERDDDVKKLYDYLIGNANK 105
|
|
| SpaA |
pfam17802 |
Prealbumin-like fold domain; This entry contains a prealbumin-like domain from a wide variety ... |
286-349 |
6.39e-05 |
|
Prealbumin-like fold domain; This entry contains a prealbumin-like domain from a wide variety of bacterial surface proteins. This entry corresponds to domain 1 and domain 3 of SpaA from Corynebacterium diphtheriae. Some members of this family contain an isopeptide bond.
Pssm-ID: 465513 [Multi-domain] Cd Length: 72 Bit Score: 41.80 E-value: 6.39e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 553746391 286 KLLEGATLKLSQIEGSGFQEK--DFQSNSLGETV--ELPNGTYTLTETLSPDGYKI-AEPIKFRVENKK 349
Cdd:pfam17802 4 KPLAGAEFTLYDADGTVDGKVvgTLTTDEDGKATfdGLPPGTYTLKETKAPDGYVLdDTPIEFTVTEDG 72
|
|
| surf_Nterm_1 |
NF012162 |
surface-anchored protein thioester-forming domain; This model describes a conserved region, ... |
406-567 |
6.51e-05 |
|
surface-anchored protein thioester-forming domain; This model describes a conserved region, fairly rich in insertions and deletions, located just past the signal peptide region in long, variable, and typically highly repetitive and sortase-dependent surface proteins. Members are found in a broad range of taxa, including many strains of Streptococcus pneumoniae. A conserved Cys forms a thioester bond, often to a host protein for covalent attachment.
Pssm-ID: 467950 [Multi-domain] Cd Length: 234 Bit Score: 45.14 E-value: 6.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 406 VVYCFNADLHSPP--DSYDSGEtinpdtstmkevkYTHTAGSD---LFKYALRPRDT----NPEDFLKHIKKVIEKGYKK 476
Cdd:NF012162 74 QAFCFNLKKKFPSydDSSVKKW-------------YKKLLGSDketFKKYARDPRRDgtisNPNELWDKLRKVIYNGYPK 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 477 KGD---SYNGLTETQFRAATQLAIYYFTDSA---DLKTLKTYNNGKGyhgfesmdEKTLAVtkELITYAQNGSAPQLTN- 549
Cdd:NF012162 141 DPTdimGRSGLTPLNFINVTQNAIWYYTDGSkvsKDDNSYEYEAQNS--------QSQEQL--ELMREALKKLIDPNSDf 210
|
170 180
....*....|....*....|...
gi 553746391 550 -LDFFVP----NNSKYQSLIGTE 567
Cdd:NF012162 211 eLRIYKPqdvgGQKGYQALLSGR 233
|
|
| ClfA |
COG4932 |
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing ... |
228-347 |
7.42e-05 |
|
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443959 [Multi-domain] Cd Length: 689 Bit Score: 46.12 E-value: 7.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 228 KTPSGYRLNvfeshDKTFQNLLSAEYVPDTPPKPGEEPPaktEKTSVIIRKYAEGDYSKLLEGATLKLSQIEGSGFQEKD 307
Cdd:COG4932 322 KAPAGYDLD-----GEAVKVTITAGQTTTVTVTNGNNEV---KTGSVTLTKVDADDGEAPLAGAEFTLTDADGTVVATIT 393
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 553746391 308 FQSNSLGETVELPNGTYTLTETLSPDGYKI-AEPIKFRVEN 347
Cdd:COG4932 394 TDADGTASFKGLAPGTYTLTETKAPEGYTLdSTPITVTVTD 434
|
|
| ClfA |
COG4932 |
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing ... |
251-374 |
7.75e-05 |
|
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443959 [Multi-domain] Cd Length: 689 Bit Score: 46.12 E-value: 7.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 251 AEYVPDTPPKPGEEPPAKTEKTSVIIRKYAEGDYSKLLEGATLKLSQieGSGFQEKDFQSNSLGETV--ELPNGTYTLTE 328
Cdd:COG4932 143 TVTAAATDGVNDVDGNGASVTDSVTLKKVDDGDTGKPLPGATFTLYD--SDGTLVKTVTTDADGKYTftDLPPGTYTLTE 220
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 553746391 329 TLSPDGYKIAePIKFRVENKKVFIVQKDGSQVENPNKEVAEPYSVE 374
Cdd:COG4932 221 TKAPEGYVLD-TKDPTGATITVTVNAGGTVTVTLKNTPKYTKGSVT 265
|
|
| ClfA |
COG4932 |
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing ... |
228-367 |
4.00e-03 |
|
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443959 [Multi-domain] Cd Length: 689 Bit Score: 40.73 E-value: 4.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553746391 228 KTPSGYRLNVFESHDKTFQNLLSAEYVPDTPPKPGEEPPakteKTSVIIRKyAEGDYSKLLEGATLKLSQIEGSG-FQEK 306
Cdd:COG4932 222 KAPEGYVLDTKDPTGATITVTVNAGGTVTVTLKNTPKYT----KGSVTVTK-TDADTGEPLAGATFTLTDADGNTvVTTT 296
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 553746391 307 DFQSNSLGETV--ELPNGTYTLTETLSPDGYKIA-EPIKFRVENKKVFIVQKDGSQVENPNKEV 367
Cdd:COG4932 297 VTVTDADGSYTftDLPPGTYTVTETKAPAGYDLDgEAVKVTITAGQTTTVTVTNGNNEVKTGSV 360
|
|
| |
