NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|571061326|ref|WP_024127755|]
View 

MULTISPECIES: cag pathogenicity island Cag12 family protein [Enterobacteriaceae]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Cag12 super family cl16105
Cag pathogenicity island protein Cag12; This is a Proteobacterial family of Cag pathogenicity ...
 22-113 1.57e-07

Cag pathogenicity island protein Cag12; This is a Proteobacterial family of Cag pathogenicity island proteins.


The actual alignment was detected with superfamily member pfam13117:

Pssm-ID: 432983  Cd Length: 96  Bit Score: 46.42  E-value: 1.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571061326   22 PQVEWEKRPEVMNTQIMNWKPTSGVIKSDNINSSLSKVLPDFKPENHLYDDS-----VFYAVAHSEKIVVRTSSFDsYWS 96
Cdd:pfam13117   1 VPLQWSGSATPINNELIVEKYVEIPLNSPLKNGPWTVQVYLSPNYKDTLLPNkqvvlTFYLVHHAKKIVVSGQANK-IFN 79

                          90
                  ....*....|....*..
gi 571061326   97 AKCWLRKNGATGVIEYQ 113
Cdd:pfam13117  80 YKNYFQANGAKGVIDYQ 96
 
Name Accession Description Interval E-value
Cag12 pfam13117
Cag pathogenicity island protein Cag12; This is a Proteobacterial family of Cag pathogenicity ...
 22-113 1.57e-07

Cag pathogenicity island protein Cag12; This is a Proteobacterial family of Cag pathogenicity island proteins.


Pssm-ID: 432983  Cd Length: 96  Bit Score: 46.42  E-value: 1.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571061326   22 PQVEWEKRPEVMNTQIMNWKPTSGVIKSDNINSSLSKVLPDFKPENHLYDDS-----VFYAVAHSEKIVVRTSSFDsYWS 96
Cdd:pfam13117   1 VPLQWSGSATPINNELIVEKYVEIPLNSPLKNGPWTVQVYLSPNYKDTLLPNkqvvlTFYLVHHAKKIVVSGQANK-IFN 79

                          90
                  ....*....|....*..
gi 571061326   97 AKCWLRKNGATGVIEYQ 113
Cdd:pfam13117  80 YKNYFQANGAKGVIDYQ 96
 
Name Accession Description Interval E-value
Cag12 pfam13117
Cag pathogenicity island protein Cag12; This is a Proteobacterial family of Cag pathogenicity ...
 22-113 1.57e-07

Cag pathogenicity island protein Cag12; This is a Proteobacterial family of Cag pathogenicity island proteins.


Pssm-ID: 432983  Cd Length: 96  Bit Score: 46.42  E-value: 1.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571061326   22 PQVEWEKRPEVMNTQIMNWKPTSGVIKSDNINSSLSKVLPDFKPENHLYDDS-----VFYAVAHSEKIVVRTSSFDsYWS 96
Cdd:pfam13117   1 VPLQWSGSATPINNELIVEKYVEIPLNSPLKNGPWTVQVYLSPNYKDTLLPNkqvvlTFYLVHHAKKIVVSGQANK-IFN 79

                          90
                  ....*....|....*..
gi 571061326   97 AKCWLRKNGATGVIEYQ 113
Cdd:pfam13117  80 YKNYFQANGAKGVIDYQ 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH