|
Name |
Accession |
Description |
Interval |
E-value |
| HerA_C |
pfam05872 |
Helicase HerA-like C-terminal; HerA is a DNA helicase able to utilize either 3' or 5' ... |
3-498 |
0e+00 |
|
Helicase HerA-like C-terminal; HerA is a DNA helicase able to utilize either 3' or 5' single-stranded DNA extensions for loading and subsequent DNA duplex unwinding. It forms a complex with NurA nuclease, this complex has the 5'-3' DNA end resection activity and is essential for cell viability in the crenarchaeon Sulfolobus islandicus. This entry represents the C-terminal domain of HerA which seems to be involved in the conversion of ATP hydrolysis into DNA translocation.
Pssm-ID: 428657 [Multi-domain] Cd Length: 503 Bit Score: 899.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 3 EPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLTRLKN 82
Cdd:pfam05872 1 EPLLGAGTPGQPLGLALKLANRHGLIAGATGTGKTVTLQTLAESFSDAGVPVFMADVKGDLSGIAAPGEPQDKLAARAAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 83 IGVNDWQPHANPVVVWDIFGEKGHSVRATVSDLGPLLLARQLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIG 162
Cdd:pfam05872 81 MGLDDYQPAAFPVIFWDLFGEKGHPVRATISEMGPLLLARLLNLNDTQEGVLNIAFRVADDEGLLLLDLKDLRALLTYVA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 163 DNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDTNGKGVINILSAEKLYQMPKLYAASLLWM 242
Cdd:pfam05872 161 DNAKELGNQYGNVSPASVGAIQRALLTLEQQGAEHFFGEPALDIEDLMRTDADGRGVISLLAADKLINAPKLYSTFLLWL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 243 LSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHA 322
Cdd:pfam05872 241 LSELFEQLPEVGDPDKPKLVFFFDEAHLLFNDAPKALLDKVEQVVRLIRSKGVGVYFVTQNPLDLPDTVLGQLGNRVQHA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 323 LRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHS 402
Cdd:pfam05872 321 LRAFTPRDQKAVKAAADTFRPNPAFDTEEAITSLGTGEALVSTLDEKGAPSIVQRTLVRPPASRIGPLTDEERAALVAAS 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 403 PVYGKYEDDVDRESAYEMLQKGVQASTEQQKNPPTKGkEVAVDDGILGGLKDILFGT----TGPRGGKKDGVVQTMAKSA 478
Cdd:pfam05872 401 PVAGVYDQPIDRESAYEMLAGKAAAAAEAQAQAPAEQ-EKGGRSGLLGGLDDTALGPmpakVGPRGGKRETVVEALAKSA 479
|
490 500
....*....|....*....|....
gi 585334195 479 AR----QVTNQIVRGMLGSLLGGR 498
Cdd:pfam05872 480 VRsvasQVGREIVRGILGSLLRKR 503
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
2-388 |
6.46e-119 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 354.30 E-value: 6.46e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 2 SEPLLIAR--TPDTELFL-LPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKllt 78
Cdd:COG0433 23 GGGILIGKllSPGVPVYLdLDKLLNRHILILGATGSGKSNTLQVLLEELSRAGVPVLVFDPHGEYSGLAEPGAERAD--- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 79 rlknigVNDWQPHAN---PVVVWDIFgekghsvrATVSDLGPLLLARqLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLR 155
Cdd:COG0433 100 ------VGVFDPGAGrplPINPWDLF--------ATASELGPLLLSR-LDLNDTQRGVLREALRLADDKGLLLLDLKDLI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 156 AitqYIGDNAKsFQNQYGNISSASVGAIQRGLLSLEQqgAAHFFGEPMLDIKDWMRTDTNgkgvINILSAEKLyqMPKLY 235
Cdd:COG0433 165 A---LLEEGEE-LGEEYGNVSAASAGALLRRLESLES--ADGLFGEPGLDLEDLLRTDGR----VTVIDLSGL--PEELQ 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 236 AASLLWMLSELYEQLPEAGDLE--KPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLG 313
Cdd:COG0433 233 STFVLWLLRELFEARPEVGDADdrKLPLVLVIDEAHLLAPAAPSALLEILERIAREGRKFGVGLILATQRPSDIDEDVLS 312
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 585334195 314 QLGNrvQHALRAFTPKDQKAVKAAAQTMranpAFDTEKAIQELGTGEALISfLDAKGSPSVVERAMviaPCSRMG 388
Cdd:COG0433 313 QLGT--QIILRLFNPRDQKAVKAAAETL----SEDLLERLPSLGTGEALVL-GEGIPLPVLVKIRL---PESRPG 377
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
198-307 |
2.41e-07 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 49.91 E-value: 2.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 198 FFGEPMLDIkdWMR------TDTNGKGVINILSAEKlyQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLL 271
Cdd:cd01127 15 SIVIPLLDQ--AARggsviiTDPKGELFLVIPDRDD--SFAALRALFFNQLFRALTELASLSPGRLPRRVWFILDEFANL 90
|
90 100 110
....*....|....*....|....*....|....*.
gi 585334195 272 fndapqVLLDKIEQVIRLIRSKGVGVWFVSQNPSDI 307
Cdd:cd01127 91 ------GRIPNLPNLLATGRKRGISVVLILQSLAQL 120
|
|
| cdc6 |
PRK00411 |
ORC1-type DNA replication protein; |
27-54 |
4.82e-03 |
|
ORC1-type DNA replication protein;
Pssm-ID: 234751 [Multi-domain] Cd Length: 394 Bit Score: 39.45 E-value: 4.82e-03
10 20
....*....|....*....|....*...
gi 585334195 27 LITGATGTGKTVTLQKLAESLSEIGVPV 54
Cdd:PRK00411 59 LIYGPPGTGKTTTVKKVFEELEEIAVKV 86
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| HerA_C |
pfam05872 |
Helicase HerA-like C-terminal; HerA is a DNA helicase able to utilize either 3' or 5' ... |
3-498 |
0e+00 |
|
Helicase HerA-like C-terminal; HerA is a DNA helicase able to utilize either 3' or 5' single-stranded DNA extensions for loading and subsequent DNA duplex unwinding. It forms a complex with NurA nuclease, this complex has the 5'-3' DNA end resection activity and is essential for cell viability in the crenarchaeon Sulfolobus islandicus. This entry represents the C-terminal domain of HerA which seems to be involved in the conversion of ATP hydrolysis into DNA translocation.
Pssm-ID: 428657 [Multi-domain] Cd Length: 503 Bit Score: 899.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 3 EPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLTRLKN 82
Cdd:pfam05872 1 EPLLGAGTPGQPLGLALKLANRHGLIAGATGTGKTVTLQTLAESFSDAGVPVFMADVKGDLSGIAAPGEPQDKLAARAAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 83 IGVNDWQPHANPVVVWDIFGEKGHSVRATVSDLGPLLLARQLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIG 162
Cdd:pfam05872 81 MGLDDYQPAAFPVIFWDLFGEKGHPVRATISEMGPLLLARLLNLNDTQEGVLNIAFRVADDEGLLLLDLKDLRALLTYVA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 163 DNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDTNGKGVINILSAEKLYQMPKLYAASLLWM 242
Cdd:pfam05872 161 DNAKELGNQYGNVSPASVGAIQRALLTLEQQGAEHFFGEPALDIEDLMRTDADGRGVISLLAADKLINAPKLYSTFLLWL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 243 LSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHA 322
Cdd:pfam05872 241 LSELFEQLPEVGDPDKPKLVFFFDEAHLLFNDAPKALLDKVEQVVRLIRSKGVGVYFVTQNPLDLPDTVLGQLGNRVQHA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 323 LRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHS 402
Cdd:pfam05872 321 LRAFTPRDQKAVKAAADTFRPNPAFDTEEAITSLGTGEALVSTLDEKGAPSIVQRTLVRPPASRIGPLTDEERAALVAAS 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 403 PVYGKYEDDVDRESAYEMLQKGVQASTEQQKNPPTKGkEVAVDDGILGGLKDILFGT----TGPRGGKKDGVVQTMAKSA 478
Cdd:pfam05872 401 PVAGVYDQPIDRESAYEMLAGKAAAAAEAQAQAPAEQ-EKGGRSGLLGGLDDTALGPmpakVGPRGGKRETVVEALAKSA 479
|
490 500
....*....|....*....|....
gi 585334195 479 AR----QVTNQIVRGMLGSLLGGR 498
Cdd:pfam05872 480 VRsvasQVGREIVRGILGSLLRKR 503
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
2-388 |
6.46e-119 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 354.30 E-value: 6.46e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 2 SEPLLIAR--TPDTELFL-LPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKllt 78
Cdd:COG0433 23 GGGILIGKllSPGVPVYLdLDKLLNRHILILGATGSGKSNTLQVLLEELSRAGVPVLVFDPHGEYSGLAEPGAERAD--- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 79 rlknigVNDWQPHAN---PVVVWDIFgekghsvrATVSDLGPLLLARqLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLR 155
Cdd:COG0433 100 ------VGVFDPGAGrplPINPWDLF--------ATASELGPLLLSR-LDLNDTQRGVLREALRLADDKGLLLLDLKDLI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 156 AitqYIGDNAKsFQNQYGNISSASVGAIQRGLLSLEQqgAAHFFGEPMLDIKDWMRTDTNgkgvINILSAEKLyqMPKLY 235
Cdd:COG0433 165 A---LLEEGEE-LGEEYGNVSAASAGALLRRLESLES--ADGLFGEPGLDLEDLLRTDGR----VTVIDLSGL--PEELQ 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 236 AASLLWMLSELYEQLPEAGDLE--KPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLG 313
Cdd:COG0433 233 STFVLWLLRELFEARPEVGDADdrKLPLVLVIDEAHLLAPAAPSALLEILERIAREGRKFGVGLILATQRPSDIDEDVLS 312
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 585334195 314 QLGNrvQHALRAFTPKDQKAVKAAAQTMranpAFDTEKAIQELGTGEALISfLDAKGSPSVVERAMviaPCSRMG 388
Cdd:COG0433 313 QLGT--QIILRLFNPRDQKAVKAAAETL----SEDLLERLPSLGTGEALVL-GEGIPLPVLVKIRL---PESRPG 377
|
|
| VirB4 |
COG3451 |
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ... |
23-314 |
4.11e-15 |
|
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain] Cd Length: 546 Bit Score: 77.68 E-value: 4.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 23 NRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQA--GTASEklLTRLKNIGVNdwqphanPVVVWDI 100
Cdd:COG3451 204 NGNTLILGPSGSGKSFLLKLLLLQLLRYGARIVIFDPGGSYEILVRAlgGTYID--LSPGSPTGLN-------PFDLEDT 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 101 FGEkghsvRATVSDLGPLLLARQ-LNLNDVQSGVL----NIIFRIADDQgllllDFKDLRAITQYIGDNAKSfqnqygni 175
Cdd:COG3451 275 EEK-----RDFLLELLELLLGREgEPLTPEERAAIdravRALYRRADPE-----ERTTLSDLYELLKEQPEA-------- 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 176 ssasvGAIQRGLLSLEQQGA-AHFF-GEPMLDIKDwmrtdtngkGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEA 253
Cdd:COG3451 337 -----KDLAARLEPYTKGGSyGWLFdGPTNLDLSD---------ARFVVFDLTELLDNPELRPPVLLYLLHRIWNRLRKN 402
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 585334195 254 GDlEKPKLVFFfDEAHLLFNDapQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQ 314
Cdd:COG3451 403 ND-GRPTLIVI-DEAWLLLDN--PAFAEFLEEWLKTLRKYNGAVIFATQSVEDFLSSPIAE 459
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
25-332 |
4.17e-13 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 70.78 E-value: 4.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 25 HGLITGATGTGKTVTLQKLAesLSEI--GVPVFMADVKGDLTgiaqagtasEKLLTRLKNIGvndwqphaNPVVVWDiFG 102
Cdd:COG3505 1 HVLVIGPTGSGKTVGLVIPN--LTQLarGESVVVTDPKGDLA---------ELTAGFRRRAG--------YDVYVFD-PF 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 103 EKGHSVR----ATVSDLG-PLLLARQLNLNDVQSGVLNIIFRIADDQ---GLLLL----DFKDLRAITQYIGDNAKSFQN 170
Cdd:COG3505 61 DPERSHRwnplDEIRDPAdAQELAEALIPALGGGGGGDPFWREAARAllaALILAlaeeGRRTLADVYRLLSEPEEELRE 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 171 QYGNISSASVGAIQRGLLSLEQ-------------QGAAHFFGEPML---------DIKDWMRtdtnGKGVINILSAEKL 228
Cdd:COG3505 141 LLEALPESPHPPVADTLAAFLNaaektrssvlstlASALELLSDPEVaaltsgsdfDLRDLIR----EKGTLYLVLPPDD 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 229 YQMPKLYAASLLWML-SELYEQLPEAGDLeKPKLVFFFDEAHLLfndapqVLLDKIEQVIRLIRSKGVGVWFVSQNPSDI 307
Cdd:COG3505 217 LSTLAPLLRLLLSQLiRALLRRAERSGRL-PRPVLLLLDEFANL------GRLPSLETLLATGRGYGIRLVLILQSLAQL 289
|
330 340 350
....*....|....*....|....*....|...
gi 585334195 308 PD--------NVLGQLGNRVqhalrAFTPKDQK 332
Cdd:COG3505 290 EAiygeegaeTILGNCGTKI-----FLGVNDPE 317
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
198-307 |
2.41e-07 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 49.91 E-value: 2.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 198 FFGEPMLDIkdWMR------TDTNGKGVINILSAEKlyQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLL 271
Cdd:cd01127 15 SIVIPLLDQ--AARggsviiTDPKGELFLVIPDRDD--SFAALRALFFNQLFRALTELASLSPGRLPRRVWFILDEFANL 90
|
90 100 110
....*....|....*....|....*....|....*.
gi 585334195 272 fndapqVLLDKIEQVIRLIRSKGVGVWFVSQNPSDI 307
Cdd:cd01127 91 ------GRIPNLPNLLATGRKRGISVVLILQSLAQL 120
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
8-69 |
1.37e-03 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 40.54 E-value: 1.37e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 585334195 8 ARTPDTELF------------LLPGMANRHG--LITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQA 69
Cdd:COG3267 14 SLTPDPRFLflspshrealarLEYALAQGGGfvVLTGEVGTGKTTLLRRLLERLPDDVKVAYIPNPQLSPAELLRA 89
|
|
| DUF87 |
pfam01935 |
Helicase HerA, central domain; This entry represents the central domain found in archaeal ... |
18-154 |
2.11e-03 |
|
Helicase HerA, central domain; This entry represents the central domain found in archaeal proteins such as DNA double-strand break repair helicase HerA (EC:3.6.4.12). HerA is a helicase which is able to utilize either 3' or 5' single-stranded DNA extensions for loading and subsequent DNA duplex unwinding. It forms a complex with NurA nuclease, this complex has the 5'-3' DNA end resection activity and is essential for cell viability in the crenarchaeon Sulfolobus islandicus. This domain includes the the central RecA-like catalytic core and a flanking four-helix bundle. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Pssm-ID: 376671 [Multi-domain] Cd Length: 220 Bit Score: 39.66 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585334195 18 LPGMANRHGLITGATGTGKTVTLQKLAESLSE-IGVPVFMADVKGDLTGIAQAGTASE-KLLTRLKNIGVNdwqphanpv 95
Cdd:pfam01935 18 VNKLVSRHFAILGSTGSGKSNTVAVLLEELLEkKGATVLIFDPHGEYGTLFRDLGAENvNVITPDPELKIN--------- 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 585334195 96 vVWDIfgekghsvraTVSDLGPLLLARQLNLNDVQSGVLNIIFRIADDQGLLLLDFKDL 154
Cdd:pfam01935 89 -PWLL----------SPEDLADLLEELNLPNAEVQRSILEEALDQLKSEELGKLSIDEL 136
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
24-62 |
2.52e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 38.09 E-value: 2.52e-03
10 20 30
....*....|....*....|....*....|....*....
gi 585334195 24 RHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGD 62
Cdd:pfam13401 6 GILVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLPSG 44
|
|
| cdc6 |
PRK00411 |
ORC1-type DNA replication protein; |
27-54 |
4.82e-03 |
|
ORC1-type DNA replication protein;
Pssm-ID: 234751 [Multi-domain] Cd Length: 394 Bit Score: 39.45 E-value: 4.82e-03
10 20
....*....|....*....|....*...
gi 585334195 27 LITGATGTGKTVTLQKLAESLSEIGVPV 54
Cdd:PRK00411 59 LIYGPPGTGKTTTVKKVFEELEEIAVKV 86
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
27-82 |
5.05e-03 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 37.51 E-value: 5.05e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 585334195 27 LITGATGTGKTVTLQKLAESLSEIGVPVF---MADVKGDLTGIAQAGTASEKLLTRLKN 82
Cdd:cd00009 23 LLYGPPGTGKTTLARAIANELFRPGAPFLylnASDLLEGLVVAELFGHFLVRLLFELAE 81
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| TrwB_AAD_bind |
pfam10412 |
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling ... |
4-65 |
5.97e-03 |
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Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Pssm-ID: 431268 [Multi-domain] Cd Length: 386 Bit Score: 38.82 E-value: 5.97e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 585334195 4 PLLIARTPdtelfLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTG 65
Cdd:pfam10412 1 RYTIAGVP-----LPKRSETRHTLIIGTTGSGKTQALRGLLDQARARGDRAIIFDLTGAFTE 57
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| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
25-63 |
8.09e-03 |
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TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 36.81 E-value: 8.09e-03
10 20 30
....*....|....*....|....*....|....*....
gi 585334195 25 HGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDL 63
Cdd:cd01127 1 NTLVLGTTGSGKTTSIVIPLLDQAARGGSVIITDPKGEL 39
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