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Conserved domains on  [gi|644281844|ref|WP_025297704|]
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MULTISPECIES: type-2 restriction endonuclease [Pseudomonas]

Protein Classification

PaeR7I family type II restriction endonuclease( domain architecture ID 10518812)

PaeR7I family type II restriction endonuclease similar to Pseudomonas aeruginosa endonuclease PaeR7I that recognizes the double-stranded sequence CTCGAG and cleaves after C-1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
XhoI pfam04555
Restriction endonuclease XhoI; This family consists of type II restriction enzymes (EC:3.1.21. ...
 29-220 9.39e-132

Restriction endonuclease XhoI; This family consists of type II restriction enzymes (EC:3.1.21.4) that recognize the double-stranded sequence CTCGAG and cleave after C-1.


:

Pssm-ID: 461351  Cd Length: 191  Bit Score: 369.52  E-value: 9.39e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644281844   29 KQIESGKADQGERAGVTGGKNMDGFLALVLDIIKANGLAHAEIHQNRAMLtLPGYFRPTKLWDLLVIYKGELIAAIELKS 108
Cdd:pfam04555   1 KQQESGKADQGERAAVTGGKQMDGFVELVLEIIMANGLDEASIYQKKALL-LPGFFRPTKLWDLLVIHEGQLIAAIEFKS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644281844  109 QVGPSFGNNFNNRTEEAIGTAHDLWTAFREEAFGKQPRPFVGWLMMVEDAPESRRPVRDSSPHFPVFEEFKGASYLTRYD 188
Cdd:pfam04555  80 QVGPSFGNNFNNRTEEAMGTALDLWTAYREGAFGTSPRPFLGYLMLLEDCPESRGSVRVSEPHFPVFEEFKGASYVKRYE 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 644281844  189 LLCQRLVQEQLYTTAAVIAAERSAVDTGDFTE 220
Cdd:pfam04555 160 LLCRKLVRERLYTAAAFIASDREGGNDGEFSE 191
 
Name Accession Description Interval E-value
XhoI pfam04555
Restriction endonuclease XhoI; This family consists of type II restriction enzymes (EC:3.1.21. ...
 29-220 9.39e-132

Restriction endonuclease XhoI; This family consists of type II restriction enzymes (EC:3.1.21.4) that recognize the double-stranded sequence CTCGAG and cleave after C-1.


Pssm-ID: 461351  Cd Length: 191  Bit Score: 369.52  E-value: 9.39e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644281844   29 KQIESGKADQGERAGVTGGKNMDGFLALVLDIIKANGLAHAEIHQNRAMLtLPGYFRPTKLWDLLVIYKGELIAAIELKS 108
Cdd:pfam04555   1 KQQESGKADQGERAAVTGGKQMDGFVELVLEIIMANGLDEASIYQKKALL-LPGFFRPTKLWDLLVIHEGQLIAAIEFKS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644281844  109 QVGPSFGNNFNNRTEEAIGTAHDLWTAFREEAFGKQPRPFVGWLMMVEDAPESRRPVRDSSPHFPVFEEFKGASYLTRYD 188
Cdd:pfam04555  80 QVGPSFGNNFNNRTEEAMGTALDLWTAYREGAFGTSPRPFLGYLMLLEDCPESRGSVRVSEPHFPVFEEFKGASYVKRYE 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 644281844  189 LLCQRLVQEQLYTTAAVIAAERSAVDTGDFTE 220
Cdd:pfam04555 160 LLCRKLVRERLYTAAAFIASDREGGNDGEFSE 191
 
Name Accession Description Interval E-value
XhoI pfam04555
Restriction endonuclease XhoI; This family consists of type II restriction enzymes (EC:3.1.21. ...
 29-220 9.39e-132

Restriction endonuclease XhoI; This family consists of type II restriction enzymes (EC:3.1.21.4) that recognize the double-stranded sequence CTCGAG and cleave after C-1.


Pssm-ID: 461351  Cd Length: 191  Bit Score: 369.52  E-value: 9.39e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644281844   29 KQIESGKADQGERAGVTGGKNMDGFLALVLDIIKANGLAHAEIHQNRAMLtLPGYFRPTKLWDLLVIYKGELIAAIELKS 108
Cdd:pfam04555   1 KQQESGKADQGERAAVTGGKQMDGFVELVLEIIMANGLDEASIYQKKALL-LPGFFRPTKLWDLLVIHEGQLIAAIEFKS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644281844  109 QVGPSFGNNFNNRTEEAIGTAHDLWTAFREEAFGKQPRPFVGWLMMVEDAPESRRPVRDSSPHFPVFEEFKGASYLTRYD 188
Cdd:pfam04555  80 QVGPSFGNNFNNRTEEAMGTALDLWTAYREGAFGTSPRPFLGYLMLLEDCPESRGSVRVSEPHFPVFEEFKGASYVKRYE 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 644281844  189 LLCQRLVQEQLYTTAAVIAAERSAVDTGDFTE 220
Cdd:pfam04555 160 LLCRKLVRERLYTAAAFIASDREGGNDGEFSE 191
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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