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Conserved domains on  [gi|648489688|ref|WP_026181439|]
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type IV pilus secretin PilQ [Thioalkalivibrio sp. ALJ7]

Protein Classification

AMIN and IV_pilus_PilQ domain-containing protein( domain architecture ID 11672464)

AMIN and IV_pilus_PilQ domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 128-717 0e+00

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 813.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 128 ASEYQTRVEGNNLILTLGRGVSEADAqtqqvvdrAGEPTTTTRSARPMEITGIDFRRGGEGEGRVEVDLSRSGAEIDVRE 207
Cdd:COG4796    1 PVPYETRVEGNALLVTLGPAAAAAAA--------AAAAFAEAAAAAANAIRDIDFRRGEDGEGRVVVDLSDPGVGVDIRQ 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 208 QAGRIELTFPRAMIDESLERRLDVVDFATPVHTIDTVSERNRVRMEVEARGEYEILSYQSDRQFVLEVAPISEAEREARA 287
Cdd:COG4796   73 QGGKLVVDFLNTSLPEELRRRLDVTDFATPVQSIDAFQQGDNVRLVIEPRGDWEYSAYQTDNQFVVEVKPLTEDENKLAQ 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 288 REEEEFAGERLSLNFQDIEVRSVLQLLADFTDLNIVVSDTVGGNITLRLNNVPWDQALDIILRSRGLDKRMDGNVLYVAP 367
Cdd:COG4796  153 GGKKGYTGEKLSLNFQDIPVRSVLQLIADFTGLNLVISDSVTGNITLRLKNVPWDQALDIILKAKGLDKRKNGNVLLVAP 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 368 SQEIAARERQEMEAARDRQELEPLRTEFVQINFAQAEQIASLIRGGDGGeFLSERGSITIDSRTNTLLIQDTQSRIEDVR 447
Cdd:COG4796  233 AEELAAREKLELEAKQQIEELEPLRTEYIQLNYAKASDLAKLLKGQRGS-LLSERGSVTVDERTNTLIVRDTPSKLEEIR 311

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 448 RLVSTLDVPVQQVLIETRIVIAEDTFNRELGARFGISGSRGTDRRTqLGVGGSLDGASsargapggtpsgaserAGGVAL 527
Cdd:COG4796  312 RLIAKLDIPVRQVLIEARIVEASDSFSRELGVRWGGSGANGTGNNR-GGIGGSLNGTT----------------AGTPLL 374

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 528 GNRLNSSLPAGSSAGSAGLSILR--SGVLLDLELSALQVEGRGEIISSPRVITANGQTATIKQGEEIPYQEATASGATST 605
Cdd:COG4796  375 PDGLNVNLPAANPAGSLGLTLAKlgGGRLLDLELSALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQESSSSGATSV 454

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 606 QFIEAVLSTEVTPQITPNGNVILDIKVTKDEPSQRVILGVPGINKREVETQVFVGNGETVVLGGVYEIDSRTNLEKVPFF 685
Cdd:COG4796  455 EFKEAVLSLEVTPQITPDGRIILDLDVSKDSPGETVAGGVPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFL 534

                        570       580       590
                 ....*....|....*....|....*....|..
gi 648489688 686 GDIPFLGNLFRNRSTENTKAELLIFVTPRVLD 717
Cdd:COG4796  535 GDIPLLGWLFKNTTKTDEKRELLIFITPRIVK 566
AMIN pfam11741
AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the ...
 60-144 7.10e-06

AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localizes to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localization of periplasmic protein complexes.


:

Pssm-ID: 463338  Cd Length: 96  Bit Score: 44.99  E-value: 7.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688   60 QVNLRFSDTPPSDIRAFAIDSPPRIALDLPEVGNALPRRETELNVGPLlraSTVEAG----NRTRVVLNLTQASEYQTRV 135
Cdd:pfam11741   9 GTELELETSGGEKYQVFTLSNPNRLVIDIPGAQLGLPLKRIENPSPGI---KSVRVGqfdpNTVRVVVDLDGSVLPQVPV 85

                          90
                  ....*....|.
gi 648489688  136 E--GNNLILTL 144
Cdd:pfam11741  86 FksGEGLVVDL 96
 
Name Accession Description Interval E-value
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 128-717 0e+00

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 813.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 128 ASEYQTRVEGNNLILTLGRGVSEADAqtqqvvdrAGEPTTTTRSARPMEITGIDFRRGGEGEGRVEVDLSRSGAEIDVRE 207
Cdd:COG4796    1 PVPYETRVEGNALLVTLGPAAAAAAA--------AAAAFAEAAAAAANAIRDIDFRRGEDGEGRVVVDLSDPGVGVDIRQ 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 208 QAGRIELTFPRAMIDESLERRLDVVDFATPVHTIDTVSERNRVRMEVEARGEYEILSYQSDRQFVLEVAPISEAEREARA 287
Cdd:COG4796   73 QGGKLVVDFLNTSLPEELRRRLDVTDFATPVQSIDAFQQGDNVRLVIEPRGDWEYSAYQTDNQFVVEVKPLTEDENKLAQ 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 288 REEEEFAGERLSLNFQDIEVRSVLQLLADFTDLNIVVSDTVGGNITLRLNNVPWDQALDIILRSRGLDKRMDGNVLYVAP 367
Cdd:COG4796  153 GGKKGYTGEKLSLNFQDIPVRSVLQLIADFTGLNLVISDSVTGNITLRLKNVPWDQALDIILKAKGLDKRKNGNVLLVAP 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 368 SQEIAARERQEMEAARDRQELEPLRTEFVQINFAQAEQIASLIRGGDGGeFLSERGSITIDSRTNTLLIQDTQSRIEDVR 447
Cdd:COG4796  233 AEELAAREKLELEAKQQIEELEPLRTEYIQLNYAKASDLAKLLKGQRGS-LLSERGSVTVDERTNTLIVRDTPSKLEEIR 311

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 448 RLVSTLDVPVQQVLIETRIVIAEDTFNRELGARFGISGSRGTDRRTqLGVGGSLDGASsargapggtpsgaserAGGVAL 527
Cdd:COG4796  312 RLIAKLDIPVRQVLIEARIVEASDSFSRELGVRWGGSGANGTGNNR-GGIGGSLNGTT----------------AGTPLL 374

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 528 GNRLNSSLPAGSSAGSAGLSILR--SGVLLDLELSALQVEGRGEIISSPRVITANGQTATIKQGEEIPYQEATASGATST 605
Cdd:COG4796  375 PDGLNVNLPAANPAGSLGLTLAKlgGGRLLDLELSALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQESSSSGATSV 454

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 606 QFIEAVLSTEVTPQITPNGNVILDIKVTKDEPSQRVILGVPGINKREVETQVFVGNGETVVLGGVYEIDSRTNLEKVPFF 685
Cdd:COG4796  455 EFKEAVLSLEVTPQITPDGRIILDLDVSKDSPGETVAGGVPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFL 534

                        570       580       590
                 ....*....|....*....|....*....|..
gi 648489688 686 GDIPFLGNLFRNRSTENTKAELLIFVTPRVLD 717
Cdd:COG4796  535 GDIPLLGWLFKNTTKTDEKRELLIFITPRIVK 566
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 295-717 0e+00

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 566.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  295 GERLSLNFQDIEVRSVLQLLADFTDLNIVVSDTVGGNITLRLNNVPWDQALDIILRSRGLDKRMDGNVLYVAPSQEIAAR 374
Cdd:TIGR02515   1 GEKISLNFQDIPVRTVLQVIAEFTGLNIVVSDSVQGNITLRLKNVPWDQALDIVLKSKGLDKRRDGNIIYIAPLDELAAQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  375 ERQEMEAARDRQELEPLRTEFVQINFAQAEQIASLIRGGDGGE--FLSERGSITIDSRTNTLLIQDTQSRIEDVRRLVST 452
Cdd:TIGR02515  81 EKDELEAKKQIENLEPLQTELIQLNYAKASDIAKVLTGVTGGSggLLSPRGSVTVDPRTNTLIVTDTPENLARIRKLIAE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  453 LDVPVQQVLIETRIVIAEDTFNRELGARFGISGSRGTDRRTQLGVGGSLDGASSARGAPGGTPSGaseraggvaLGNRLN 532
Cdd:TIGR02515 161 LDIPVRQVLIEARIVEATDSFSRELGVRWGITDKNGNGNGTAGGIGGNNGTTATGAGGTGNPPFG---------DNLNVN 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  533 SSLPAGSSAGSAGLSILRSGVLLDLELSALQVEGRGEIISSPRVITANGQTATIKQGEEIPYQEATASGATSTQFIEAVL 612
Cdd:TIGR02515 232 LATATTAAGISFALGKIGSGRLLDLELSALESEGKGEIISSPRVLTANNKEAKIEQGTEIPYQQTSSSGATSVEFKEAVL 311

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  613 STEVTPQITPNGNVILDIKVTKDEP--SQRVILGVPGINKREVETQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPF 690
Cdd:TIGR02515 312 SLEVTPQITPDGRIIMDLLVSKDSPgvVAQAGGGVPAIDKQEINTQVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIPV 391

                         410       420
                  ....*....|....*....|....*..
gi 648489688  691 LGNLFRNRSTENTKAELLIFVTPRVLD 717
Cdd:TIGR02515 392 LGNLFKKTGKSDEKSELLIFITPRIVN 418
hofQ PRK13568
DNA uptake porin HofQ;
310-716 1.16e-114

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 350.57  E-value: 1.16e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 310 VLQLLADFTDLNIVVSDTVGGNITLRLNNVPWDQALDIILRSRGLDKRMDGNVLYVAPSQEIAARER-QEMEAARDRQEL 388
Cdd:PRK13568   1 VLQALADYQQLNLVTAPGVGGNLSLRLIEVPWEQALAIILRMGKLSAEREGNVLMVFPEQEIQERQQkTKQQAAPQEQML 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 389 ePLRTEFVQINFAQAEQIASLIRGgDGGEFLSERGSITIDSRTNTLLIQDTQSRIEDVRRLVSTLDVPVQQVLIETRIVI 468
Cdd:PRK13568  81 -PLANLTLTLQYADAEEVADSLQS-QRGGLLSPRGSVTADKRTNTLLIRDTPAALAQLKNWLIELDLPLQQVQLAAHIVT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 469 AEDTFNRELGARFGISGsrgtdrrtqlgvggsldgassargapggtpsgasERAGGVALG-NRLNSSLPAGSSAGSAGLS 547
Cdd:PRK13568 159 ISSESLQELGVRWGMGE----------------------------------GKQGNTALRiNDFNVNLPLPNPAASAGFH 204

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 548 ILR-SGVLLDLELSALQVEGRGEIISSPRVITANGQTATIKQGEEIPYQEAT-ASGATSTQFIEAVLSTEVTPQITPNGN 625
Cdd:PRK13568 205 LARlGGRLLDLELSALEQENQVDIIASPRLFTSHQQTASIKQGTEIPYTVSSgKSGSTSIEFKEAVLGMEVTPKILRNGR 284

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 626 VILDIKVTKDEPSQRVILG---VPGINKREVETQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLGNLFRNRSTEN 702
Cdd:PRK13568 285 ITLKLKISQNMPGRTIKRGegeMLAIDKQEIQTQVTVKDGETIVLGGIFQQQKRQSVNKVPLLGDIPLLGALFRQDTQQQ 364

                        410
                 ....*....|....
gi 648489688 703 TKAELLIFVTPRVL 716
Cdd:PRK13568 365 SRRELVIFITPKLI 378
Secretin pfam00263
Bacterial type II and III secretion system protein;
561-716 9.60e-58

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 192.73  E-value: 9.60e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  561 ALQVEGRGEIISSPRVITANGQTATIKQGEEIPYQEATASGATST---QFIEAVLSTEVTPQITPNGNVILDIKVTKDEP 637
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTTttvEFKDAGLSLKVTPQVTPDGTITLKINPEVSSP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648489688  638 SQRVILGVPGINKREVETQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLGNLFRNRSTENTKAELLIFVTPRVL 716
Cdd:pfam00263  81 DGNGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFITPRIV 159
STN smart00965
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 320-367 4.79e-07

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 198033 [Multi-domain]  Cd Length: 52  Bit Score: 47.11  E-value: 4.79e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 648489688   320 LNIVVSD--TVGGNITLRLNNVPWDQALDIILRSRGLD-KRMDGNVLYVAP 367
Cdd:smart00965   1 LNFVYDPalVAGRRVSLLLGNVTVEQALDRLLAGTGLTyRRIGGNTIVLSP 51
AMIN pfam11741
AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the ...
 60-144 7.10e-06

AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localizes to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localization of periplasmic protein complexes.


Pssm-ID: 463338  Cd Length: 96  Bit Score: 44.99  E-value: 7.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688   60 QVNLRFSDTPPSDIRAFAIDSPPRIALDLPEVGNALPRRETELNVGPLlraSTVEAG----NRTRVVLNLTQASEYQTRV 135
Cdd:pfam11741   9 GTELELETSGGEKYQVFTLSNPNRLVIDIPGAQLGLPLKRIENPSPGI---KSVRVGqfdpNTVRVVVDLDGSVLPQVPV 85

                          90
                  ....*....|.
gi 648489688  136 E--GNNLILTL 144
Cdd:pfam11741  86 FksGEGLVVDL 96
 
Name Accession Description Interval E-value
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 128-717 0e+00

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 813.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 128 ASEYQTRVEGNNLILTLGRGVSEADAqtqqvvdrAGEPTTTTRSARPMEITGIDFRRGGEGEGRVEVDLSRSGAEIDVRE 207
Cdd:COG4796    1 PVPYETRVEGNALLVTLGPAAAAAAA--------AAAAFAEAAAAAANAIRDIDFRRGEDGEGRVVVDLSDPGVGVDIRQ 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 208 QAGRIELTFPRAMIDESLERRLDVVDFATPVHTIDTVSERNRVRMEVEARGEYEILSYQSDRQFVLEVAPISEAEREARA 287
Cdd:COG4796   73 QGGKLVVDFLNTSLPEELRRRLDVTDFATPVQSIDAFQQGDNVRLVIEPRGDWEYSAYQTDNQFVVEVKPLTEDENKLAQ 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 288 REEEEFAGERLSLNFQDIEVRSVLQLLADFTDLNIVVSDTVGGNITLRLNNVPWDQALDIILRSRGLDKRMDGNVLYVAP 367
Cdd:COG4796  153 GGKKGYTGEKLSLNFQDIPVRSVLQLIADFTGLNLVISDSVTGNITLRLKNVPWDQALDIILKAKGLDKRKNGNVLLVAP 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 368 SQEIAARERQEMEAARDRQELEPLRTEFVQINFAQAEQIASLIRGGDGGeFLSERGSITIDSRTNTLLIQDTQSRIEDVR 447
Cdd:COG4796  233 AEELAAREKLELEAKQQIEELEPLRTEYIQLNYAKASDLAKLLKGQRGS-LLSERGSVTVDERTNTLIVRDTPSKLEEIR 311

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 448 RLVSTLDVPVQQVLIETRIVIAEDTFNRELGARFGISGSRGTDRRTqLGVGGSLDGASsargapggtpsgaserAGGVAL 527
Cdd:COG4796  312 RLIAKLDIPVRQVLIEARIVEASDSFSRELGVRWGGSGANGTGNNR-GGIGGSLNGTT----------------AGTPLL 374

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 528 GNRLNSSLPAGSSAGSAGLSILR--SGVLLDLELSALQVEGRGEIISSPRVITANGQTATIKQGEEIPYQEATASGATST 605
Cdd:COG4796  375 PDGLNVNLPAANPAGSLGLTLAKlgGGRLLDLELSALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQESSSSGATSV 454

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 606 QFIEAVLSTEVTPQITPNGNVILDIKVTKDEPSQRVILGVPGINKREVETQVFVGNGETVVLGGVYEIDSRTNLEKVPFF 685
Cdd:COG4796  455 EFKEAVLSLEVTPQITPDGRIILDLDVSKDSPGETVAGGVPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFL 534

                        570       580       590
                 ....*....|....*....|....*....|..
gi 648489688 686 GDIPFLGNLFRNRSTENTKAELLIFVTPRVLD 717
Cdd:COG4796  535 GDIPLLGWLFKNTTKTDEKRELLIFITPRIVK 566
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 295-717 0e+00

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 566.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  295 GERLSLNFQDIEVRSVLQLLADFTDLNIVVSDTVGGNITLRLNNVPWDQALDIILRSRGLDKRMDGNVLYVAPSQEIAAR 374
Cdd:TIGR02515   1 GEKISLNFQDIPVRTVLQVIAEFTGLNIVVSDSVQGNITLRLKNVPWDQALDIVLKSKGLDKRRDGNIIYIAPLDELAAQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  375 ERQEMEAARDRQELEPLRTEFVQINFAQAEQIASLIRGGDGGE--FLSERGSITIDSRTNTLLIQDTQSRIEDVRRLVST 452
Cdd:TIGR02515  81 EKDELEAKKQIENLEPLQTELIQLNYAKASDIAKVLTGVTGGSggLLSPRGSVTVDPRTNTLIVTDTPENLARIRKLIAE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  453 LDVPVQQVLIETRIVIAEDTFNRELGARFGISGSRGTDRRTQLGVGGSLDGASSARGAPGGTPSGaseraggvaLGNRLN 532
Cdd:TIGR02515 161 LDIPVRQVLIEARIVEATDSFSRELGVRWGITDKNGNGNGTAGGIGGNNGTTATGAGGTGNPPFG---------DNLNVN 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  533 SSLPAGSSAGSAGLSILRSGVLLDLELSALQVEGRGEIISSPRVITANGQTATIKQGEEIPYQEATASGATSTQFIEAVL 612
Cdd:TIGR02515 232 LATATTAAGISFALGKIGSGRLLDLELSALESEGKGEIISSPRVLTANNKEAKIEQGTEIPYQQTSSSGATSVEFKEAVL 311

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  613 STEVTPQITPNGNVILDIKVTKDEP--SQRVILGVPGINKREVETQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPF 690
Cdd:TIGR02515 312 SLEVTPQITPDGRIIMDLLVSKDSPgvVAQAGGGVPAIDKQEINTQVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIPV 391

                         410       420
                  ....*....|....*....|....*..
gi 648489688  691 LGNLFRNRSTENTKAELLIFVTPRVLD 717
Cdd:TIGR02515 392 LGNLFKKTGKSDEKSELLIFITPRIVN 418
hofQ PRK13568
DNA uptake porin HofQ;
310-716 1.16e-114

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 350.57  E-value: 1.16e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 310 VLQLLADFTDLNIVVSDTVGGNITLRLNNVPWDQALDIILRSRGLDKRMDGNVLYVAPSQEIAARER-QEMEAARDRQEL 388
Cdd:PRK13568   1 VLQALADYQQLNLVTAPGVGGNLSLRLIEVPWEQALAIILRMGKLSAEREGNVLMVFPEQEIQERQQkTKQQAAPQEQML 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 389 ePLRTEFVQINFAQAEQIASLIRGgDGGEFLSERGSITIDSRTNTLLIQDTQSRIEDVRRLVSTLDVPVQQVLIETRIVI 468
Cdd:PRK13568  81 -PLANLTLTLQYADAEEVADSLQS-QRGGLLSPRGSVTADKRTNTLLIRDTPAALAQLKNWLIELDLPLQQVQLAAHIVT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 469 AEDTFNRELGARFGISGsrgtdrrtqlgvggsldgassargapggtpsgasERAGGVALG-NRLNSSLPAGSSAGSAGLS 547
Cdd:PRK13568 159 ISSESLQELGVRWGMGE----------------------------------GKQGNTALRiNDFNVNLPLPNPAASAGFH 204

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 548 ILR-SGVLLDLELSALQVEGRGEIISSPRVITANGQTATIKQGEEIPYQEAT-ASGATSTQFIEAVLSTEVTPQITPNGN 625
Cdd:PRK13568 205 LARlGGRLLDLELSALEQENQVDIIASPRLFTSHQQTASIKQGTEIPYTVSSgKSGSTSIEFKEAVLGMEVTPKILRNGR 284

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 626 VILDIKVTKDEPSQRVILG---VPGINKREVETQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLGNLFRNRSTEN 702
Cdd:PRK13568 285 ITLKLKISQNMPGRTIKRGegeMLAIDKQEIQTQVTVKDGETIVLGGIFQQQKRQSVNKVPLLGDIPLLGALFRQDTQQQ 364

                        410
                 ....*....|....
gi 648489688 703 TKAELLIFVTPRVL 716
Cdd:PRK13568 365 SRRELVIFITPKLI 378
hofQ PRK10560
outer membrane porin HofQ; Provisional
 304-717 3.52e-84

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 271.31  E-value: 3.52e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 304 DIEVRSVLQLLADFTDLNIVVSDTVGGNITLRLNNVPWDQALDIILRSRGLDKRMDGNVLYVAPS---QEIAARerQEME 380
Cdd:PRK10560   4 DVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLILRQEGNILSVHSQawqNENIAR--QEAE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 381 AARDRQELePLRTEFVQINFAQAEQIASlirggDGGEFLSERGSITIDSRTNTLLIQDTQSRIEDVRRLVSTLDVPVQQV 460
Cdd:PRK10560  82 QARAQANL-PLENRSITLQYADAGELAK-----AGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQV 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 461 LIETRIVIAEDTFNRELGARFGISGSRGtdrrtqlgvggsldgassargapggtpsgaserAGGVALGNRLNSSLPAGSS 540
Cdd:PRK10560 156 ELAAHIVTINEKSLRELGVKWTLADAQQ---------------------------------AGGVGQVTTLGSDLSVATA 202

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 541 AGSAGLSILR-SGVLLDLELSALQVEGRGEIISSPRVITANGQTATIKQGEEIPYQEATA-SGATSTQFIEAVLSTEVTP 618
Cdd:PRK10560 203 TTRVGFNIGRiNGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGeSGATSVEFKEAVLGMEVTP 282

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 619 QITPNGNVILDIKVTKDEPSQRVILG---VPGINKREVETQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLGNLF 695
Cdd:PRK10560 283 TVLQKGRIRLKLHISQNVPGQVLQQAdgeVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGQDSVPLLGDIPWLGQLF 362

                        410       420
                 ....*....|....*....|..
gi 648489688 696 RNRSTENTKAELLIFVTPRVLD 717
Cdd:PRK10560 363 RHDGKEDERRELVVFITPRLVS 384
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 394-717 3.36e-65

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 219.02  E-value: 3.36e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 394 EFVQINFAQAEQIASLIRGGDGGeflSERGSITIDSRTNTLLIQDTQSRIEDVRRLVSTLDVPVQQVLIETRIVIAEDTF 473
Cdd:COG1450   18 DVLRALYADAEDLAKVLRSLLGG---AAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSD 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 474 NRELGARFGISGSRGTDrrTQLGVGGSLdgassargapgGTPSGASERAGGVALGnrlnsslpagssagsaglsiLRSGV 553
Cdd:COG1450   95 LRELGIDWSALGGNGGG--VNFGGTGSL-----------GSLAAAGSLGGGLNLG--------------------LLGGG 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 554 LLDLELSALQVEGRGEIISSPRVITANGQTATIKQGEEIPYQEATASGATST------QFIEAVLSTEVTPQITPNGNVI 627
Cdd:COG1450  142 NFGALLNALESNGDANVLSSPSILTLNNQEAVIKVGQTVPYVTGSTTTSSTGnptttiEYVDVGITLKVTPQINEDGTVT 221

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 628 LDIKVTKDEPSQRVI---LGVPGINKREVETQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLGNLFRNRSTENTK 704
Cdd:COG1450  222 LDINPEVSSVTGSTTgggNGLPTINKREISTTVRVKDGQTVVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEK 301

                        330
                 ....*....|...
gi 648489688 705 AELLIFVTPRVLD 717
Cdd:COG1450  302 TELVIFITPTIIR 314
Secretin pfam00263
Bacterial type II and III secretion system protein;
561-716 9.60e-58

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 192.73  E-value: 9.60e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  561 ALQVEGRGEIISSPRVITANGQTATIKQGEEIPYQEATASGATST---QFIEAVLSTEVTPQITPNGNVILDIKVTKDEP 637
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTTttvEFKDAGLSLKVTPQVTPDGTITLKINPEVSSP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648489688  638 SQRVILGVPGINKREVETQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLGNLFRNRSTENTKAELLIFVTPRVL 716
Cdd:pfam00263  81 DGNGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFITPRIV 159
IV PHA00019
phage assembly protein
 293-716 1.69e-53

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 190.41  E-value: 1.69e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 293 FAGERLSLNFQDIEVRSVLQLLADFTDLNIVVSDTVGGNITLR---LNNVPWDQALDIILRSRGLDKRMDGNVL---YVA 366
Cdd:PHA00019  19 FSSFALPVELNNSPIREFVSWYSQQTGKSVVLGPDVKGNVTVYsadVNPANLPQFFDSVLRANGFDLVAGGPAVvikQNP 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 367 PSQEIAARERQEMEAARDRQELE--------PLRTEFVQINFAQAEQIASLIRggdggEFL----SERGSITIDSRTNTL 434
Cdd:PHA00019  99 NQEDYADDLRDSRDDVFYDNSVPsgapevpnDLIVRTFNINNVRASDLLPLVK-----IFVksngAPGGSVTDLPGTNSL 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 435 LIQDTQSRIEDVRRLVSTLDVPVQQVLIETRIVIAEDTFNRELGARFGisgsrgtdrrtqlgvggsldgassargapggt 514
Cdd:PHA00019 174 VVSGSASQLPALADFISAIDVPRRQVLIEALIFETSLGDGVDLSFAAG-------------------------------- 221

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 515 psgaSERAGGVALGNRLNSSLPAGSSAGsAGLSILrSGVLLDLELSALQVEGRGEIISSPRVITANGQTATIKQGEEIPY 594
Cdd:PHA00019 222 ----LASGGKVAGGFNTARLTTVLSSAG-GSFGIF-NGNVLGLSVKALENSSNSRVLSRPRILTLSGQSGYISVGQNVPF 295

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 595 -----QEATASGATSTQFIE---AVLSTEVTPQITPNGNVILDIKVTKDEPS-QRVILGVPgINKREVETQVFVGNGETV 665
Cdd:PHA00019 296 vtgrvTGEAANVNNPFQTIErkdVGVSLEVTPVVMGDGQLVLDIDTKADSLSdSTIASDII-TNQRSLQTTVQVKDGQTL 374

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|.
gi 648489688 666 VLGGVYEIDSRTNLEKVPFFGDIPFLGNLFRNRSTENTKAELLIFVTPRVL 716
Cdd:PHA00019 375 LLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSDSNEQRTLYVLLTARVI 425
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 360-717 6.11e-47

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 176.04  E-value: 6.11e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  360 GNVLYVAPSQEIAARERQEMEAARDRQElEPLRTEFVQINFAQAEQIASLIRGGDGGE---------------------- 417
Cdd:TIGR02517 204 NNILIRAGSPEALERIKKLISQLDVPAS-EGGNVRVYYLRNADAEELAKTLQGVFGGGgnepgsssspglggavnpggsq 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  418 -------FLSERGSITIDSRTNTLLIQDTQSRIEDVRRLVSTLDVPVQQVLIETRIVIAEDTFNRELGARFGISGSRGtd 490
Cdd:TIGR02517 283 saqaassASGGSVSGSADKATNSLIITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAGTGG-- 360

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  491 rrtqlGVGGSLDGASSArGAPGGTPSGASERAGGVALGnrlnsslpAGSSAGSAGLSILRSGVLLDLELSALQVEGRGEI 570
Cdd:TIGR02517 361 -----GVNFSTGSPNSG-SLLGASASAISLGSAGIGLL--------VTSSSTTSGVGGTGGGPNLGVLLNALKQDTGFNV 426

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  571 ISSPRVITANGQTATIKQGEEIPYQEATASGATST---------QFIEAVLSTEVTPQITPNGNVILDIKVTKDEPSQRV 641
Cdd:TIGR02517 427 LSTPSLLTLDNQEAEINVGQEVPVLTGSYNTGTGGtnanpfntyQRKDVGIKLKVTPQINEGGTVRLEIYQEVSSVAPTT 506

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 648489688  642 IL---GVPGINKREVETQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLGNLFRNRSTENTKAELLIFVTPRVLD 717
Cdd:TIGR02517 507 VGsaaSGPTFNKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFITPRIIR 585
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 448-715 1.52e-34

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 137.31  E-value: 1.52e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 448 RLVSTLDVP-VQQVLIETRIVIAEDTFNRELGARFGISGSRGtdrrtqlGVGGSLDGASSARGAPGGTPSGASeraggva 526
Cdd:COG4964  164 KVINLLTVGgPQQVMLKVRVAEVSRSVLKQLGINWSGLGSSG-------GFSFGLLTGGLLSGLLGGATAGAF------- 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 527 lgnrlnsslpAGSSAGSAGLSILrsgvlldleLSALQVEGRGEIISSPRVITANGQTATIKQGEEIPYQEATASGATSTQ 606
Cdd:COG4964  230 ----------SGFGFGNASISAT---------LDALEQNGLARVLAEPNLTALSGETASFLAGGEFPIPVAQGDGTITVE 290

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 607 FIEAVLSTEVTPQITPNGNVILDIK--VTKDEPSQRVILG---VPGINKREVETQVFVGNGETVVLGGVYEIDSRTNLEK 681
Cdd:COG4964  291 YKEFGVSLNFTPTVLSNGRISLKVApeVSELDPSNAVTLNgitIPGLTTRRAETTVELRSGQSFAIAGLLSSNTRQNVSK 370

                        250       260       270
                 ....*....|....*....|....*....|....
gi 648489688 682 VPFFGDIPFLGNLFRNRSTENTKAELLIFVTPRV 715
Cdd:COG4964  371 VPGLGDIPILGALFRSRSFQRNETELVIIVTPYL 404
type_III_yscC TIGR02516
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to ...
 309-717 2.28e-33

type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274174 [Multi-domain]  Cd Length: 462  Bit Score: 134.04  E-value: 2.28e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  309 SVLQLLADFT---DLNIVVSDTVGGNITLRLNNVPWDQALDIILRSRGLDKRMDGNVLYVAPSQEI----------AARE 375
Cdd:TIGR02516  10 SLRALLADFAanyGIPVVVSSKVNKKVTGKFEDDNPEKFLQRLALLYGLTWYYDGNALYIYPNSEIaravisprplSANE 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  376 -----------------------------------------RQEMEAARDRQELEPLRTEFVQINFAQAEQI-------- 406
Cdd:TIGR02516  90 lkkalrrsglydprfpwrgdpeegtvyvsgppayidlvrnaATALEKQDQGRAGNRQVVKVFPLKYASASDRtynyrdqk 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  407 ------ASLIRG-------GDGGEFLSERGSITIDSRTNTLLIQDTQSRIEDVRRLVSTLDVPVQQVLIETRIVIAEDTF 473
Cdd:TIGR02516 170 vtipgvATILRRllsggrqGAGGGRASASPKISADPRTNAVLIRDRPERMAIYEQLIQQLDVPPRLIEISAWIIDIDASD 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  474 NRELGARFgisgsRGTDRRTQLGVGGsldgassargapggtpsgaseraggvalgnrlNSSLPAGSSAGSAGLSILRSGV 553
Cdd:TIGR02516 250 LSQLGVDW-----QATLGAGDRQTGF--------------------------------NVSAGAGLGATGSSIVTSDGDY 292

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  554 LLdLELSALQVEGRGEIISSPRVITANGQTATIKQGEEIpYQEATASGATSTQFIEAVLSTEVTPQITPNGNVILDIKVT 633
Cdd:TIGR02516 293 FM-ARVNALEQTGKAKIVSRPSVLTLENVQAVLDNNRTF-YVKVSGERVADLESVTAGTSLRVTPRVIGDEGAQRQIKLN 370

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  634 -------KDEPSQRVILGVPGINKREVETQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLGNLFRNRSTENTKAE 706
Cdd:TIGR02516 371 vdiedgqQKTDGTSTVDALPEIKRTEINTQARVGHGQSLLIGGYYRDESADSVDGIPLLGDIPLLGNLFRSTSKEKSRVV 450

                         490
                  ....*....|.
gi 648489688  707 LLIFVTPRVLD 717
Cdd:TIGR02516 451 RLFLITPKIVR 461
pilus_MshL TIGR02519
pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, ...
 425-716 2.21e-30

pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures]


Pssm-ID: 274176 [Multi-domain]  Cd Length: 290  Bit Score: 121.34  E-value: 2.21e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  425 ITIDSRTNTLLIQDTQSRIEDVRRLVSTL-DVPVQQVLIETRIViaEDTFNRelGARFGISGSRGTDrrtQLGVGGSLDG 503
Cdd:TIGR02519   1 YIINPEAGLLTVTATPAQIRRVEEYLESLqERIHRQVLIEAKIL--EVTLSD--NHQQGIDWSNFNG---SGLARYKALG 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  504 ASSARGAPGGTPSGAseraggvaLGNRLNSSLPAGSSAGSAGLSILRsgvlldlelsALQVEGRGEIISSPRVITANGQT 583
Cdd:TIGR02519  74 AANSNDSSGNQFSSG--------LGFLDNIGLPTGVNSGFGFDSIIN----------FLATFGDTKVLSNPKVMALNNQP 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688  584 ATIKQGEEIPYQEATAS-----GATSTQFIEAVLST-------EVTPQITPNGNVILDIKVTKDEPSQRVI--------- 642
Cdd:TIGR02519 136 AVISVGDNIRYVTEESStgttgGTTSTASSDTRVDSvfsgivlGVTPQISDDGKVILNVHPSISEVKPQSIdlnpvgnga 215

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 648489688  643 -LGVPGINKREVETQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLGNLFRNRSTENTKAELLIFVTPRVL 716
Cdd:TIGR02519 216 eVALPEISVKEMSSVLRVKDGDTVVLGGLIDKKKSNTKTGLPFLGDIPGLGYLFGYKSKSKKKTELVIIIRPSVV 290
PRK15346 PRK15346
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
428-701 1.28e-11

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237950 [Multi-domain]  Cd Length: 499  Bit Score: 67.41  E-value: 1.28e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 428 DSRTNTLLIQDTQSRIEDVRRLVSTLDVPVQQVLIETRI--VIAEDtFNrelgarfgisgsrgtdrrtQLGVggslDGAS 505
Cdd:PRK15346 241 DPRQNAVIVRDRAANMAIYRSLITQLDQRPQMIEISVSIidVDAGD-IN-------------------QLGI----DWSA 296

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 506 SARgaPGGtpsgaseraGGVALgnrlNSSlPAGSSAGSAGLSILRSGVLLdLELSALQVEGRGEIISSPRVITANGQTA- 584
Cdd:PRK15346 297 SAS--LGG---------GKISF----NSG-FADGNASGFSTVISNTGNFM-VRLNALEKNSKAKILSQPSVVTLNNIQAv 359

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 585 --------TIKQGEEIPYQEATASGATstqfieavlsTEVTPQ-ITPNGN----VILDIKVTKDEPSQRVILGVPGINKR 651
Cdd:PRK15346 360 ldknvtfyTKLQGEKVAKLESITTGSL----------LRVTPRlIDDNGTqkvmLNLNIQDGQQSATQSETDPLPEVQNS 429

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 648489688 652 EVETQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLGNLFRNRSTE 701
Cdd:PRK15346 430 EIATQATLKAGQSLLLGGFIQDKQIESQNKIPLLGDIPLIGGLFRSTDKQ 479
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 393-459 4.70e-11

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 58.77  E-value: 4.70e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 648489688  393 TEFVQINFAQAEQIASLIRG-GDGGEFLSERGSITIDSRTNTLLIQDTQSRIEDVRRLVSTLDVPVQQ 459
Cdd:pfam03958   1 TRVIPLKYASAEDLASALRSlLGGSGLLSKRGSVVADPRTNSLIVSGPPEYVELVRQLIKQLDVPRAQ 68
PRK15339 PRK15339
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
431-717 1.39e-07

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237948 [Multi-domain]  Cd Length: 559  Bit Score: 54.78  E-value: 1.39e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 431 TNTLLIQDTQSRIEDVRRLVSTLDVPVQQVLIETRIV-IAEDTFNrelgarfgisgsrgtdrrtQLGVGGSldgassarg 509
Cdd:PRK15339 274 TNSLLVKGTAEQVHFIEMLVKALDVAKRHVELSLWIIdLDKSDLE-------------------QLGVNWS--------- 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 510 apggtpsgaseraGGVALGNRLNSSLPAGSSAGSAGLSILRSgvlldleLSALQVEGRGEIISSPRVITAngqtatikqg 589
Cdd:PRK15339 326 -------------GSITIGDKLGVSLNQSSISTLDGSRFIAA-------VMALEQKKKANVVSRPVVLTQ---------- 375

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688 590 EEIP---------YQEATASGATSTQFIEAVLSTEVTPQITPNGNV--ILDIK----VTKDEPSQRVILGVPGINKREVE 654
Cdd:PRK15339 376 ENIPaifdnnrtfYTKLVGERNVALEHVTYGTMISVLPRFSADGQIemSLDIEdgneKTPQSDTTTSVDALPEVGRTLIS 455

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 648489688 655 TQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLGNLFRNRSTENTKAELLIFVTPRVLD 717
Cdd:PRK15339 456 TIARVPQGKSLLIGGYTRDANTDEVQSIPFLGSLPLIGSLFRYSSKNKSNIVRVFLIEPREIV 518
STN smart00965
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 320-367 4.79e-07

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 198033 [Multi-domain]  Cd Length: 52  Bit Score: 47.11  E-value: 4.79e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 648489688   320 LNIVVSD--TVGGNITLRLNNVPWDQALDIILRSRGLD-KRMDGNVLYVAP 367
Cdd:smart00965   1 LNFVYDPalVAGRRVSLLLGNVTVEQALDRLLAGTGLTyRRIGGNTIVLSP 51
AMIN pfam11741
AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the ...
 60-144 7.10e-06

AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localizes to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localization of periplasmic protein complexes.


Pssm-ID: 463338  Cd Length: 96  Bit Score: 44.99  E-value: 7.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648489688   60 QVNLRFSDTPPSDIRAFAIDSPPRIALDLPEVGNALPRRETELNVGPLlraSTVEAG----NRTRVVLNLTQASEYQTRV 135
Cdd:pfam11741   9 GTELELETSGGEKYQVFTLSNPNRLVIDIPGAQLGLPLKRIENPSPGI---KSVRVGqfdpNTVRVVVDLDGSVLPQVPV 85

                          90
                  ....*....|.
gi 648489688  136 E--GNNLILTL 144
Cdd:pfam11741  86 FksGEGLVVDL 96
STN pfam07660
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 321-368 2.30e-05

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 429580 [Multi-domain]  Cd Length: 51  Bit Score: 42.12  E-value: 2.30e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 648489688  321 NIVVS-DTVGGN--ITLRLNNVPWDQALDIILRSRGLDKRMDGNVLYVAPS 368
Cdd:pfam07660   1 SILYDsDLVDGKqsVSLNVGNVTLEEALDQLLAGTGLSYEIGGNTIVLRPK 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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