FmdB family zinc ribbon protein [Lamprocystis purpurea]
Protein Classification
COG2331 family protein( domain architecture ID 10006375)
COG2331 family protein
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| COG2331 | COG2331 | Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction ... |
1-78 | 7.22e-33 | ||
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only]; : Pssm-ID: 441902 Cd Length: 77 Bit Score: 109.75 E-value: 7.22e-33
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| Name | Accession | Description | Interval | E-value | ||
| COG2331 | COG2331 | Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction ... |
1-78 | 7.22e-33 | ||
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only]; Pssm-ID: 441902 Cd Length: 77 Bit Score: 109.75 E-value: 7.22e-33
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| CxxC_CxxC_SSSS | TIGR02605 | putative regulatory protein, FmdB family; This model represents a region of about 50 amino ... |
1-52 | 9.80e-28 | ||
putative regulatory protein, FmdB family; This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (SP:Q50229, ). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors. [Regulatory functions, DNA interactions] Pssm-ID: 274226 Cd Length: 52 Bit Score: 95.87 E-value: 9.80e-28
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| Zn-ribbon_8 | pfam09723 | Zinc ribbon domain; This entry represents a region of about 41 amino acids found in a number ... |
1-41 | 5.68e-20 | ||
Zinc ribbon domain; This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence. Pssm-ID: 462856 Cd Length: 41 Bit Score: 76.10 E-value: 5.68e-20
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| CxxC_CXXC_SSSS | smart00834 | Putative regulatory protein; CxxC_CXXC_SSSS represents a region of about 41 amino acids found ... |
1-42 | 3.55e-18 | ||
Putative regulatory protein; CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence. Pssm-ID: 197903 Cd Length: 41 Bit Score: 71.43 E-value: 3.55e-18
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| SIRT5_Af1_CobB | cd01412 | SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human ... |
3-35 | 7.92e-03 | ||
SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity. Pssm-ID: 238703 Cd Length: 224 Bit Score: 34.49 E-value: 7.92e-03
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| Name | Accession | Description | Interval | E-value | ||
| COG2331 | COG2331 | Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction ... |
1-78 | 7.22e-33 | ||
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only]; Pssm-ID: 441902 Cd Length: 77 Bit Score: 109.75 E-value: 7.22e-33
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| CxxC_CxxC_SSSS | TIGR02605 | putative regulatory protein, FmdB family; This model represents a region of about 50 amino ... |
1-52 | 9.80e-28 | ||
putative regulatory protein, FmdB family; This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (SP:Q50229, ). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors. [Regulatory functions, DNA interactions] Pssm-ID: 274226 Cd Length: 52 Bit Score: 95.87 E-value: 9.80e-28
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| Zn-ribbon_8 | pfam09723 | Zinc ribbon domain; This entry represents a region of about 41 amino acids found in a number ... |
1-41 | 5.68e-20 | ||
Zinc ribbon domain; This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence. Pssm-ID: 462856 Cd Length: 41 Bit Score: 76.10 E-value: 5.68e-20
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| CxxC_CXXC_SSSS | smart00834 | Putative regulatory protein; CxxC_CXXC_SSSS represents a region of about 41 amino acids found ... |
1-42 | 3.55e-18 | ||
Putative regulatory protein; CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence. Pssm-ID: 197903 Cd Length: 41 Bit Score: 71.43 E-value: 3.55e-18
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| NOB1_Zn_bind | pfam08772 | Nin one binding (NOB1) Zn-ribbon like; This domain corresponds to a zinc ribbon and is found ... |
4-39 | 2.92e-03 | ||
Nin one binding (NOB1) Zn-ribbon like; This domain corresponds to a zinc ribbon and is found on the RNA binding protein NOB1 (Nin one binding). Pssm-ID: 462597 Cd Length: 72 Bit Score: 34.03 E-value: 2.92e-03
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| SIRT5_Af1_CobB | cd01412 | SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human ... |
3-35 | 7.92e-03 | ||
SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity. Pssm-ID: 238703 Cd Length: 224 Bit Score: 34.49 E-value: 7.92e-03
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