NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|654381103|ref|WP_027859843|]
View 

nickel-dependent hydrogenase large subunit [Marinobacterium jannaschii]

Protein Classification

nickel-dependent hydrogenase large subunit( domain architecture ID 10448727)

nickel-dependent hydrogenase large subunit similar to the large subunits of uptake hydrogenase and quinone-reactive Ni/Fe-hydrogenase, which are both involved in recycling H(2) produced by nitrogenase

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
NiFeSe_Hases pfam00374
Nickel-dependent hydrogenase;
52-587 0e+00

Nickel-dependent hydrogenase;


:

Pssm-ID: 459789  Cd Length: 495  Bit Score: 891.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103   52 RGLEVILKGRDPRDAWAFVERICGVCTGTHALTSVRAVEDALDIQIPYNAYLIRHLMDKTLQVHDHIVHFYHLHTLDWVN 131
Cdd:pfam00374   1 RGIEIILKGRDPRDAWAFTQRICGVCTTVHALASVRAVEDALGIKIPLNAQLIRNLIQGALFVHDHIVHFYHLHALDWVD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  132 PVNALKADPKKTSELQQMVSPhHPKSSPGYFKDVQTRLKRFVEGGQLGLFSNGYWDNPAYKLPPEADLMAVSHYLEALDL 211
Cdd:pfam00374  81 VVSALKADPKKTSKLAQSISD-WPKSSPGYFKAVQDKLKKFVESGQLGPFANGYWGHPAYKLPPEANLIAVAHYLEALEM 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  212 QKEVVKIHAIFGGKNPHPN-YMVGGVACAINMddtgasgapVNMVTLNFVLERIREVQAFTKNVYLPDVMAIASIYKDWL 290
Cdd:pfam00374 160 QRKAAKIHAIFGGKNPHPQsLVVGGVTCAIDL---------LNPERLAEVKSLIDEVRDFVEQVYLPDVLAIASFYKDWA 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  291 -YGGGLAaeNLLSYGTYATIQDDKSSELLPAGAIVGGNWNEIHEVdvrDPNQIQEVVDHSWYKYAngvSGLHPWDGETDP 369
Cdd:pfam00374 231 kIGGGVG--NFLSYGDFPLDDLDGTSFLFPGGVILNGDLSKVHPV---DPDKITEDVTHSWYKYD---KGLHPYEGETEP 302
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  370 HFElgpnfkgtktnikELDESAKYSWIKAPRWKGHAMEVGPLARYIIAYAAGKEYIKEQVDRSLAgfnqntGLDLGLKQf 449
Cdd:pfam00374 303 NYT-------------GPDEDGKYSWIKAPRYDGKPMEVGPLARVLVGYAKGNPEIKELVDQFLK------KLGLPPEA- 362
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  450 LPSTLGRTLARALECELCADTMLDDWHSLVNNIKNGDSSTANvekwdPSTWPKEAKGVGINEAPRGALGHWIKIKDGKIE 529
Cdd:pfam00374 363 LFSTLGRTAARAIETKLIADLMLEWLDELVANIKAGDTSTFN-----PPTWPKEAKGVGFTEAPRGALSHWIVIKDGKIE 437
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 654381103  530 NYQAIVPTTWNGCPRDADGNIGAFEASLLNTPMERPDEPVEILRTLHSFDPCLACSTH 587
Cdd:pfam00374 438 NYQAVVPSTWNASPRDAKGQPGPYEAALIGTPVADPEQPLEILRTIHSFDPCLACAVH 495
 
Name Accession Description Interval E-value
NiFeSe_Hases pfam00374
Nickel-dependent hydrogenase;
52-587 0e+00

Nickel-dependent hydrogenase;


Pssm-ID: 459789  Cd Length: 495  Bit Score: 891.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103   52 RGLEVILKGRDPRDAWAFVERICGVCTGTHALTSVRAVEDALDIQIPYNAYLIRHLMDKTLQVHDHIVHFYHLHTLDWVN 131
Cdd:pfam00374   1 RGIEIILKGRDPRDAWAFTQRICGVCTTVHALASVRAVEDALGIKIPLNAQLIRNLIQGALFVHDHIVHFYHLHALDWVD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  132 PVNALKADPKKTSELQQMVSPhHPKSSPGYFKDVQTRLKRFVEGGQLGLFSNGYWDNPAYKLPPEADLMAVSHYLEALDL 211
Cdd:pfam00374  81 VVSALKADPKKTSKLAQSISD-WPKSSPGYFKAVQDKLKKFVESGQLGPFANGYWGHPAYKLPPEANLIAVAHYLEALEM 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  212 QKEVVKIHAIFGGKNPHPN-YMVGGVACAINMddtgasgapVNMVTLNFVLERIREVQAFTKNVYLPDVMAIASIYKDWL 290
Cdd:pfam00374 160 QRKAAKIHAIFGGKNPHPQsLVVGGVTCAIDL---------LNPERLAEVKSLIDEVRDFVEQVYLPDVLAIASFYKDWA 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  291 -YGGGLAaeNLLSYGTYATIQDDKSSELLPAGAIVGGNWNEIHEVdvrDPNQIQEVVDHSWYKYAngvSGLHPWDGETDP 369
Cdd:pfam00374 231 kIGGGVG--NFLSYGDFPLDDLDGTSFLFPGGVILNGDLSKVHPV---DPDKITEDVTHSWYKYD---KGLHPYEGETEP 302
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  370 HFElgpnfkgtktnikELDESAKYSWIKAPRWKGHAMEVGPLARYIIAYAAGKEYIKEQVDRSLAgfnqntGLDLGLKQf 449
Cdd:pfam00374 303 NYT-------------GPDEDGKYSWIKAPRYDGKPMEVGPLARVLVGYAKGNPEIKELVDQFLK------KLGLPPEA- 362
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  450 LPSTLGRTLARALECELCADTMLDDWHSLVNNIKNGDSSTANvekwdPSTWPKEAKGVGINEAPRGALGHWIKIKDGKIE 529
Cdd:pfam00374 363 LFSTLGRTAARAIETKLIADLMLEWLDELVANIKAGDTSTFN-----PPTWPKEAKGVGFTEAPRGALSHWIVIKDGKIE 437
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 654381103  530 NYQAIVPTTWNGCPRDADGNIGAFEASLLNTPMERPDEPVEILRTLHSFDPCLACSTH 587
Cdd:pfam00374 438 NYQAVVPSTWNASPRDAKGQPGPYEAALIGTPVADPEQPLEILRTIHSFDPCLACAVH 495
HyaB COG0374
Ni,Fe-hydrogenase I large subunit [Energy production and conversion];
17-602 0e+00

Ni,Fe-hydrogenase I large subunit [Energy production and conversion];


Pssm-ID: 440143  Cd Length: 539  Bit Score: 884.18  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  17 IVVDPVTRIEGHMRCEVNVDkNNVIRNAISTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSVRAVEDALDIQ 96
Cdd:COG0374    1 IVIDPITRIEGHLRIEVEVD-DGVVTDAWSSGTMFRGFEIILKGRDPRDAWAITQRICGVCTTSHALASVRALEDALGIE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  97 IPYNAYLIRHLMDKTLQVHDHIVHFYHLHTLDWVNPVNALKADPKKTSELQQmvspHHPKSSPGYFKDVQTRLKRFVEGG 176
Cdd:COG0374   80 PPPNARLIRNLILAAENLHDHLVHFYHLFALDWVDVVYALKADPKKTAASLS----PWPKASPPYFADVQDRLKPFVESG 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 177 QLGLFSNGYWDNPAYKLPPEADLMAVSHYLEALDLQKEVVKIHAIFGGKNPHP-NYMVGGVACAINMDDtgasgapvnmv 255
Cdd:COG0374  156 QLGIFANGYWGHPAYKLPPEVNLMAGAHYLEALEAQREAVEIHAIFGGKWPHPsNLVPGGVTCAITLER----------- 224
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 256 tLNFVLERIREVQAFTKNVYLPDVMAIASIYKDWL-YGGGLAaeNLLSYGTYATIQDDKSSE-LLPAGAIVGGNWNEIHE 333
Cdd:COG0374  225 -LARLKSILDEFRDFVEQVYLPDLLAFARFYKDLAkLGGGLG--NFLSYGDFPDPDNGWGGArLFPPGVILNGDLGKVHP 301
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 334 VDvrdPNQIQEVVDHSWYKyanGVSGLHPWDGETDPHFelgpnfkgtktniKELDESAKYSWIKAPRWKGHAMEVGPLAR 413
Cdd:COG0374  302 VD---PDKITEDVTHSWYE---DDGPLHPWEGETEPDY-------------TDLDKDGKYSWVKAPRYDGKPMEVGPLAR 362
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 414 YIIAYAAGKEYIKEQVDRSLAGfnqntgLDLGLKQfLPSTLGRTLARALECELCADTMLDDWHSLVNNIKNGDSSTanve 493
Cdd:COG0374  363 QLVAYAAGHPLIKDLVDAALKA------LGLPPEA-LFSTLGRTAARALEAALLADAMEKWLDALVPNIKAGDTKT---- 431
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 494 kWDPSTWPKEAKGVGINEAPRGALGHWIKIKDGKIENYQAIVPTTWNGCPRDADGNIGAFEASLLNTPMERPDEPVEILR 573
Cdd:COG0374  432 -FEPPTWPKEAKGVGLTEAPRGALGHWIVIKDGKIANYQIVVPTTWNASPRDAKGQPGPYEAALIGTPVADPEKPLEVLR 510
                        570       580
                 ....*....|....*....|....*....
gi 654381103 574 TLHSFDPCLACSTHVMSEDGQELSKVKIR 602
Cdd:COG0374  511 TVRSFDPCLACAVHVIDPKGKELLRVKVL 539
PRK10170 PRK10170
Ni/Fe-hydrogenase large subunit;
10-602 0e+00

Ni/Fe-hydrogenase large subunit;


Pssm-ID: 182281  Cd Length: 597  Bit Score: 783.83  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  10 LDNSGRRIVVDPVTRIEGHMRCEVNVDKNNVIRNAISTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSVRAV 89
Cdd:PRK10170  12 INNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAI 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  90 EDALDIQIPYNAYLIRHLMDKTLQVHDHIVHFYHLHTLDWVNPVNALKADPKKTSELQQMVSPhHPKSSPGYFKDVQTRL 169
Cdd:PRK10170  92 EDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSS-WPKSSPGYFFDVQNRL 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 170 KRFVEGGQLGLFSNGYWDNPAYKLPPEADLMAVSHYLEALDLQKEVVKIHAIFGGKNPHPNYMVGGVACAINMDDTGASG 249
Cdd:PRK10170 171 KKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVG 250
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 250 ApVNMVTLNFVLERIREVQAFTKNVYLPDVMAIASIYKDWL-YGGGLAAENLLSYGTYATIQDD--KSSELLPAGAIVGG 326
Cdd:PRK10170 251 A-VNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSeIGTGLSDKCVLSYGAFPDIANDfgEKSLLMPGGAVING 329
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 327 NWNEIHEVDVRDPNQIQEVVDHSWYKYANGVSGLHPWDGETDPHFELGpNFKGTKTNIKELDESAKYSWIKAPRWKGHAM 406
Cdd:PRK10170 330 DFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPG-DVKGSDTNIQQLNEQERYSWIKAPRWRGNAM 408
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 407 EVGPLARYIIAYAAGKEYIKEQVDRSLAGFNqntgLDLGLKQflpSTLGRTLARALECELCADTMLDDWHSLVNNIKNGD 486
Cdd:PRK10170 409 EVGPLARTLIAYHKGDAATVESVDRMMSALN----LPLSGIQ---STLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGN 481
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 487 SSTANVEKWDPSTWPKEAKGVGINEAPRGALGHWIKIKDGKIENYQAIVPTTWNGCPRDADGNIGAFEASLLNTPMERPD 566
Cdd:PRK10170 482 LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPE 561
                        570       580       590
                 ....*....|....*....|....*....|....*.
gi 654381103 567 EPVEILRTLHSFDPCLACSTHVMSEDGQELSKVKIR 602
Cdd:PRK10170 562 QPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597
NiFeSe_hydrog NF033181
nickel-dependent hydrogenase large subunit; Members of this family are the large subunit of ...
15-599 6.98e-175

nickel-dependent hydrogenase large subunit; Members of this family are the large subunit of the periplasmic nickel-dependent hydrogenase. Some members contain a selenocysteine residue.


Pssm-ID: 467982  Cd Length: 509  Bit Score: 505.71  E-value: 6.98e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  15 RRIVVDPVTRIEGHMRCEVNVDkNNVIRNAISTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSVRAVEDALD 94
Cdd:NF033181   2 QKIVIDPVTRIEGHLKIEVEVE-NGKVTDAWSSGTMFRGFEIILRGRDPRDATYITQRICGVCPTSHGTASSLALDDAFG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  95 IQIPYNAYLIRHLMDKTLQVHDHIVHFYHLHTLDWVnpvnalkadpkktselQQMVSPHHPKSSPGYFKdVQTRLKRFVE 174
Cdd:NF033181  81 AKVPANGRIIRNLILGANYLQSHILHFYHLSALDYV----------------DGPAVAQYKGNDPGLLA-VKDKIVKLVA 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 175 GGQLGLFSNGYwDNPAYKLP-PEADLMAVSHYLEALDLQKEVVKIHAIFGGKNPHPN-YMVGGVACAINMDdtgasgapv 252
Cdd:NF033181 144 AGDTAPFTPRY-EPDDYRLNdPEVVTTAVAHYLKALEMRAKAHEMSAIFGGKMPHQSsIVVGGVTELPTKE--------- 213
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 253 nmVTLNFvLERIREVQAFTKNVYLPDVMAIASIYKDWLYGGGLAAENLLSYGTYATIQDDKSSE-LLPAGAIVGGNWNeI 331
Cdd:NF033181 214 --KIEAF-RSRLAEVIDFIENVYLPDVLAFGTGYLLDLFQAGVGGGNYLSYGGFPLDDSGKDKNlLFKPGVYTDGDGK-V 289
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 332 HEVDvrdPNQIQEVVDHSWYKYANGvsGLHPWDGETDPhfelgpnfkgtktnikELDESAKYSWIKAPRWKGHAMEVGPL 411
Cdd:NF033181 290 MPLD---PSKITEDVKYSWYKDSTN--GLHPYEGVTVP----------------DPDKKGAYSFVKAPRYDGKPMEVGPL 348
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 412 ARYIIAYAAGKEYIKEQvdrslagfnqntgldLGLKQFlpSTLGRTLARALECELCADTMLDdWhslVNNIKNGDSSTAN 491
Cdd:NF033181 349 ARMWVMQPKGLPDIVKL---------------YGIKPF--SVVARHAARALETKLVAKAMLK-W---LDELEPGMPTGTP 407
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 492 VEKwdpstwPKEAKGVGINEAPRGALGHWIKIKDGKIENYQAIVPTTWNGCPRDADGNIGAFEASLLNTPMERPDEPVEI 571
Cdd:NF033181 408 REI------PASAQGMGLTEAPRGALGHWIKIKNHKIENYQMVVPTTWNASPRDDKGVRGPVEQALIGVPVPDPDNPINV 481
                        570       580
                 ....*....|....*....|....*...
gi 654381103 572 LRTLHSFDPCLACSTHVMSEDGQELSKV 599
Cdd:NF033181 482 VRVVRSFDPCLACAVHLIDPETNEIKKF 509
 
Name Accession Description Interval E-value
NiFeSe_Hases pfam00374
Nickel-dependent hydrogenase;
52-587 0e+00

Nickel-dependent hydrogenase;


Pssm-ID: 459789  Cd Length: 495  Bit Score: 891.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103   52 RGLEVILKGRDPRDAWAFVERICGVCTGTHALTSVRAVEDALDIQIPYNAYLIRHLMDKTLQVHDHIVHFYHLHTLDWVN 131
Cdd:pfam00374   1 RGIEIILKGRDPRDAWAFTQRICGVCTTVHALASVRAVEDALGIKIPLNAQLIRNLIQGALFVHDHIVHFYHLHALDWVD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  132 PVNALKADPKKTSELQQMVSPhHPKSSPGYFKDVQTRLKRFVEGGQLGLFSNGYWDNPAYKLPPEADLMAVSHYLEALDL 211
Cdd:pfam00374  81 VVSALKADPKKTSKLAQSISD-WPKSSPGYFKAVQDKLKKFVESGQLGPFANGYWGHPAYKLPPEANLIAVAHYLEALEM 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  212 QKEVVKIHAIFGGKNPHPN-YMVGGVACAINMddtgasgapVNMVTLNFVLERIREVQAFTKNVYLPDVMAIASIYKDWL 290
Cdd:pfam00374 160 QRKAAKIHAIFGGKNPHPQsLVVGGVTCAIDL---------LNPERLAEVKSLIDEVRDFVEQVYLPDVLAIASFYKDWA 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  291 -YGGGLAaeNLLSYGTYATIQDDKSSELLPAGAIVGGNWNEIHEVdvrDPNQIQEVVDHSWYKYAngvSGLHPWDGETDP 369
Cdd:pfam00374 231 kIGGGVG--NFLSYGDFPLDDLDGTSFLFPGGVILNGDLSKVHPV---DPDKITEDVTHSWYKYD---KGLHPYEGETEP 302
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  370 HFElgpnfkgtktnikELDESAKYSWIKAPRWKGHAMEVGPLARYIIAYAAGKEYIKEQVDRSLAgfnqntGLDLGLKQf 449
Cdd:pfam00374 303 NYT-------------GPDEDGKYSWIKAPRYDGKPMEVGPLARVLVGYAKGNPEIKELVDQFLK------KLGLPPEA- 362
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  450 LPSTLGRTLARALECELCADTMLDDWHSLVNNIKNGDSSTANvekwdPSTWPKEAKGVGINEAPRGALGHWIKIKDGKIE 529
Cdd:pfam00374 363 LFSTLGRTAARAIETKLIADLMLEWLDELVANIKAGDTSTFN-----PPTWPKEAKGVGFTEAPRGALSHWIVIKDGKIE 437
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 654381103  530 NYQAIVPTTWNGCPRDADGNIGAFEASLLNTPMERPDEPVEILRTLHSFDPCLACSTH 587
Cdd:pfam00374 438 NYQAVVPSTWNASPRDAKGQPGPYEAALIGTPVADPEQPLEILRTIHSFDPCLACAVH 495
HyaB COG0374
Ni,Fe-hydrogenase I large subunit [Energy production and conversion];
17-602 0e+00

Ni,Fe-hydrogenase I large subunit [Energy production and conversion];


Pssm-ID: 440143  Cd Length: 539  Bit Score: 884.18  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  17 IVVDPVTRIEGHMRCEVNVDkNNVIRNAISTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSVRAVEDALDIQ 96
Cdd:COG0374    1 IVIDPITRIEGHLRIEVEVD-DGVVTDAWSSGTMFRGFEIILKGRDPRDAWAITQRICGVCTTSHALASVRALEDALGIE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  97 IPYNAYLIRHLMDKTLQVHDHIVHFYHLHTLDWVNPVNALKADPKKTSELQQmvspHHPKSSPGYFKDVQTRLKRFVEGG 176
Cdd:COG0374   80 PPPNARLIRNLILAAENLHDHLVHFYHLFALDWVDVVYALKADPKKTAASLS----PWPKASPPYFADVQDRLKPFVESG 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 177 QLGLFSNGYWDNPAYKLPPEADLMAVSHYLEALDLQKEVVKIHAIFGGKNPHP-NYMVGGVACAINMDDtgasgapvnmv 255
Cdd:COG0374  156 QLGIFANGYWGHPAYKLPPEVNLMAGAHYLEALEAQREAVEIHAIFGGKWPHPsNLVPGGVTCAITLER----------- 224
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 256 tLNFVLERIREVQAFTKNVYLPDVMAIASIYKDWL-YGGGLAaeNLLSYGTYATIQDDKSSE-LLPAGAIVGGNWNEIHE 333
Cdd:COG0374  225 -LARLKSILDEFRDFVEQVYLPDLLAFARFYKDLAkLGGGLG--NFLSYGDFPDPDNGWGGArLFPPGVILNGDLGKVHP 301
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 334 VDvrdPNQIQEVVDHSWYKyanGVSGLHPWDGETDPHFelgpnfkgtktniKELDESAKYSWIKAPRWKGHAMEVGPLAR 413
Cdd:COG0374  302 VD---PDKITEDVTHSWYE---DDGPLHPWEGETEPDY-------------TDLDKDGKYSWVKAPRYDGKPMEVGPLAR 362
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 414 YIIAYAAGKEYIKEQVDRSLAGfnqntgLDLGLKQfLPSTLGRTLARALECELCADTMLDDWHSLVNNIKNGDSSTanve 493
Cdd:COG0374  363 QLVAYAAGHPLIKDLVDAALKA------LGLPPEA-LFSTLGRTAARALEAALLADAMEKWLDALVPNIKAGDTKT---- 431
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 494 kWDPSTWPKEAKGVGINEAPRGALGHWIKIKDGKIENYQAIVPTTWNGCPRDADGNIGAFEASLLNTPMERPDEPVEILR 573
Cdd:COG0374  432 -FEPPTWPKEAKGVGLTEAPRGALGHWIVIKDGKIANYQIVVPTTWNASPRDAKGQPGPYEAALIGTPVADPEKPLEVLR 510
                        570       580
                 ....*....|....*....|....*....
gi 654381103 574 TLHSFDPCLACSTHVMSEDGQELSKVKIR 602
Cdd:COG0374  511 TVRSFDPCLACAVHVIDPKGKELLRVKVL 539
PRK10170 PRK10170
Ni/Fe-hydrogenase large subunit;
10-602 0e+00

Ni/Fe-hydrogenase large subunit;


Pssm-ID: 182281  Cd Length: 597  Bit Score: 783.83  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  10 LDNSGRRIVVDPVTRIEGHMRCEVNVDKNNVIRNAISTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSVRAV 89
Cdd:PRK10170  12 INNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAI 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  90 EDALDIQIPYNAYLIRHLMDKTLQVHDHIVHFYHLHTLDWVNPVNALKADPKKTSELQQMVSPhHPKSSPGYFKDVQTRL 169
Cdd:PRK10170  92 EDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSS-WPKSSPGYFFDVQNRL 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 170 KRFVEGGQLGLFSNGYWDNPAYKLPPEADLMAVSHYLEALDLQKEVVKIHAIFGGKNPHPNYMVGGVACAINMDDTGASG 249
Cdd:PRK10170 171 KKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVG 250
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 250 ApVNMVTLNFVLERIREVQAFTKNVYLPDVMAIASIYKDWL-YGGGLAAENLLSYGTYATIQDD--KSSELLPAGAIVGG 326
Cdd:PRK10170 251 A-VNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSeIGTGLSDKCVLSYGAFPDIANDfgEKSLLMPGGAVING 329
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 327 NWNEIHEVDVRDPNQIQEVVDHSWYKYANGVSGLHPWDGETDPHFELGpNFKGTKTNIKELDESAKYSWIKAPRWKGHAM 406
Cdd:PRK10170 330 DFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPG-DVKGSDTNIQQLNEQERYSWIKAPRWRGNAM 408
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 407 EVGPLARYIIAYAAGKEYIKEQVDRSLAGFNqntgLDLGLKQflpSTLGRTLARALECELCADTMLDDWHSLVNNIKNGD 486
Cdd:PRK10170 409 EVGPLARTLIAYHKGDAATVESVDRMMSALN----LPLSGIQ---STLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGN 481
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 487 SSTANVEKWDPSTWPKEAKGVGINEAPRGALGHWIKIKDGKIENYQAIVPTTWNGCPRDADGNIGAFEASLLNTPMERPD 566
Cdd:PRK10170 482 LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPE 561
                        570       580       590
                 ....*....|....*....|....*....|....*.
gi 654381103 567 EPVEILRTLHSFDPCLACSTHVMSEDGQELSKVKIR 602
Cdd:PRK10170 562 QPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597
PRK10467 PRK10467
hydrogenase 2 large subunit; Provisional
15-601 0e+00

hydrogenase 2 large subunit; Provisional


Pssm-ID: 182482  Cd Length: 567  Bit Score: 542.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  15 RRIVVDPVTRIEGHMR--CEVnvdKNNVIRNAISTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSVRAVEDA 92
Cdd:PRK10467   3 QRITIDPVTRIEGHLRidCEI---ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAISSVRAAESA 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  93 LDIQIPYNAYLIRHLMDKTLQVHDHIVHFYHLHTLDWVNPVNALKADPKKTSELQQMVSpHHPKSSPGYFKDVQTRLKRF 172
Cdd:PRK10467  80 LNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASAMLKGVS-TWHLNSAEEFTKVQNKIKDL 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 173 VEGGQLGLFSNGYWDNPAYKLPPEADLMAVSHYLEALDLQKEVVKIHAIFGGKNPH-PNYMVGGVACAINMDdtgaSGAP 251
Cdd:PRK10467 159 VASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHiQNLAVGGVANPINLD----GLGV 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 252 VNMVTLNFVLERIREVQAFTKNVYLPDVMAIASIYKDWL-YGGGlaAENLLSYGTYATiQDDKSSELLPAGAIVGGNWNE 330
Cdd:PRK10467 235 LNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLtRGKG--AVNYLSVPEFPT-DSKNGSFLFPGGYIENADLST 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 331 IHEV-DVRDPN---QIQEVVDHSWYKyanGVSGLHPWDGETDphfelgPNFKGtktnikeLDESAKYSWIKAPRWKGHAM 406
Cdd:PRK10467 312 YRPItSHSDEYlikGIQESAKHAWYK---DEAPQAPWEGTTI------PAYDG-------WSDDGKYSWVKSPTFYGKTV 375
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 407 EVGPLARYIIAYAAGKEYIKEQVDRSLAGFNQNTGLDLGLKQfLPSTLGRTLARALECELCADTMLDDWHSLVNNIKNGD 486
Cdd:PRK10467 376 EVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ-LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGD 454
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 487 SSTANVEKWDPStwpKEAKGVGINEAPRGALGHWIKIKDGKIENYQAIVPTTWNGCPRDADGNIGAFEASLLNTPMERPD 566
Cdd:PRK10467 455 HTTFVKPNIPAT---GEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPN 531
                        570       580       590
                 ....*....|....*....|....*....|....*
gi 654381103 567 EPVEILRTLHSFDPCLACSTHVMSEDGQELSKVKI 601
Cdd:PRK10467 532 KPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566
NiFeSe_hydrog NF033181
nickel-dependent hydrogenase large subunit; Members of this family are the large subunit of ...
15-599 6.98e-175

nickel-dependent hydrogenase large subunit; Members of this family are the large subunit of the periplasmic nickel-dependent hydrogenase. Some members contain a selenocysteine residue.


Pssm-ID: 467982  Cd Length: 509  Bit Score: 505.71  E-value: 6.98e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  15 RRIVVDPVTRIEGHMRCEVNVDkNNVIRNAISTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSVRAVEDALD 94
Cdd:NF033181   2 QKIVIDPVTRIEGHLKIEVEVE-NGKVTDAWSSGTMFRGFEIILRGRDPRDATYITQRICGVCPTSHGTASSLALDDAFG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  95 IQIPYNAYLIRHLMDKTLQVHDHIVHFYHLHTLDWVnpvnalkadpkktselQQMVSPHHPKSSPGYFKdVQTRLKRFVE 174
Cdd:NF033181  81 AKVPANGRIIRNLILGANYLQSHILHFYHLSALDYV----------------DGPAVAQYKGNDPGLLA-VKDKIVKLVA 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 175 GGQLGLFSNGYwDNPAYKLP-PEADLMAVSHYLEALDLQKEVVKIHAIFGGKNPHPN-YMVGGVACAINMDdtgasgapv 252
Cdd:NF033181 144 AGDTAPFTPRY-EPDDYRLNdPEVVTTAVAHYLKALEMRAKAHEMSAIFGGKMPHQSsIVVGGVTELPTKE--------- 213
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 253 nmVTLNFvLERIREVQAFTKNVYLPDVMAIASIYKDWLYGGGLAAENLLSYGTYATIQDDKSSE-LLPAGAIVGGNWNeI 331
Cdd:NF033181 214 --KIEAF-RSRLAEVIDFIENVYLPDVLAFGTGYLLDLFQAGVGGGNYLSYGGFPLDDSGKDKNlLFKPGVYTDGDGK-V 289
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 332 HEVDvrdPNQIQEVVDHSWYKYANGvsGLHPWDGETDPhfelgpnfkgtktnikELDESAKYSWIKAPRWKGHAMEVGPL 411
Cdd:NF033181 290 MPLD---PSKITEDVKYSWYKDSTN--GLHPYEGVTVP----------------DPDKKGAYSFVKAPRYDGKPMEVGPL 348
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 412 ARYIIAYAAGKEYIKEQvdrslagfnqntgldLGLKQFlpSTLGRTLARALECELCADTMLDdWhslVNNIKNGDSSTAN 491
Cdd:NF033181 349 ARMWVMQPKGLPDIVKL---------------YGIKPF--SVVARHAARALETKLVAKAMLK-W---LDELEPGMPTGTP 407
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 492 VEKwdpstwPKEAKGVGINEAPRGALGHWIKIKDGKIENYQAIVPTTWNGCPRDADGNIGAFEASLLNTPMERPDEPVEI 571
Cdd:NF033181 408 REI------PASAQGMGLTEAPRGALGHWIKIKNHKIENYQMVVPTTWNASPRDDKGVRGPVEQALIGVPVPDPDNPINV 481
                        570       580
                 ....*....|....*....|....*...
gi 654381103 572 LRTLHSFDPCLACSTHVMSEDGQELSKV 599
Cdd:NF033181 482 VRVVRSFDPCLACAVHLIDPETNEIKKF 509
FrhA COG3259
Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion];
14-602 1.49e-42

Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion];


Pssm-ID: 442490  Cd Length: 458  Bit Score: 159.16  E-value: 1.49e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  14 GRRIVVDPVTRIEGHMRCEVNVDKNNVIRNAISTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSVRAVEDAL 93
Cdd:COG3259    2 TRRITIDPVTRVEGHGKITIFLDDDGKVKDARLHIVEPRGFEKFLEGRPYEEVPDITARICGICPVAHHLASAKALEAAF 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  94 DIQIPYNAYLIRHLMDKTLQVHDHIVHFYHLHtldwvnpvnalkadpkktselqqmvsphhpksSPGYFKdvqtrlKRFV 173
Cdd:COG3259   82 GVEPPPTARKLRRLLYCGEWIQSHALHFFFLA--------------------------------APDFLG------YRNV 123
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 174 eggqLGLfsngywdnpAYKLPPEAdlmavshyLEALDLQKEVVKIHAIFGGKNPHP-NYMVGGVACAINMDDtgasgapv 252
Cdd:COG3259  124 ----LGL---------AKKHPELV--------KRGLRLRKLGNEIIELLGGRAIHPvNAVPGGFSKAPSEEE-------- 174
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 253 nmvtLNFVLERIREVqaftknvyLPDVMAIASIYKDWLygggLAAENLLSYGTYAT----IQDDKSSELLPAGAIVGGNW 328
Cdd:COG3259  175 ----RDELLERLEEA--------LEFAEEAVDLFKDLF----LKNKDEVDFPDFDTefmgLVDDGEYPLYDGRLRIVDSD 238
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 329 NEIHEVDVRD-PNQIQE-VVDHSWykyangvsglhpwdgetdphfelgpnfkgtktnikeldesAKYSWIKAPRWKGHAM 406
Cdd:COG3259  239 GKILEFDPADyLDHIAEeVVPWSY----------------------------------------AKFPYLKGLGYDGIYR 278
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 407 eVGPLARYIIAYAAGKEYIKEQVDRslagfnqntgldLGLKQFLPS--TLGRTLARALECELCADTMLDdwhsLVNNIK- 483
Cdd:COG3259  279 -VGPLARLNLNDDILTPLAQEALEE------------FGLRFGPPVhnPFAYHWARLIEILYAAERAIE----LLEDPEi 341
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103 484 NGDSSTANVEkwdpstwPKEAKGVGINEAPRGALGHWIKI-KDGKIENYQAIVPTTWNgcprdadgnigafeasllNTPM 562
Cdd:COG3259  342 TGPPLRVPVG-------PRAGEGVGVVEAPRGTLIHHYTVdEDGLITKANLIVPTTQN------------------NAAI 396
                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 654381103 563 ER--------------PDEpvEILRTLH----SFDPCLACSTHVMsedGQELSKVKIR 602
Cdd:COG3259  397 EEdvrqvakalldggePDE--GLLNRVEmairAYDPCISCATHAL---GQMPLKLELV 449
HycE2 COG3261
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
25-108 1.33e-14

Ni,Fe-hydrogenase III large subunit [Energy production and conversion];


Pssm-ID: 442492 [Multi-domain]  Cd Length: 479  Bit Score: 76.55  E-value: 1.33e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654381103  25 IE-GHMRCEVNVDKnnvIRNA-ISTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSVRAVEDALDIQIPYNAY 102
Cdd:COG3261  135 IEpGHFRFSVEGER---ILDLeIRLGYVHRGIEKLAEGRDYEQALYLAERICGICSVAHALAYCQAVEKAAGIEVPPRAQ 211

                 ....*.
gi 654381103 103 LIRHLM 108
Cdd:COG3261  212 YLRVIL 217
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH