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Conserved domains on  [gi|657013756|ref|WP_029257834|]
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MULTISPECIES: helix-turn-helix domain-containing protein [Pediococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_59 super family cl38718
Helix-turn-helix domain; This family of proteins is functionally uncharacterized. This family ...
 12-66 2.69e-13

Helix-turn-helix domain; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 63 and 82 amino acids in length. This domain is a helix-turn-helix suggesting it is likely a DNA-binding transcriptional regulator.


The actual alignment was detected with superfamily member pfam20038:

Pssm-ID: 453862  Cd Length: 66  Bit Score: 58.61  E-value: 2.69e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 657013756  12 DELIGSREASLMWGKQKDYVR---TIYNKYPKRFPEGTIRKFGKQLVVTRDGMEKVTG 66
Cdd:pfam20038  5 DDVMTTAEAAERWGVSDDTVKqacTGRKGKPPRFTAGEARKSGKVWLVTRAGMERVYG 62
 
Name Accession Description Interval E-value
HTH_59 pfam20038
Helix-turn-helix domain; This family of proteins is functionally uncharacterized. This family ...
 12-66 2.69e-13

Helix-turn-helix domain; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 63 and 82 amino acids in length. This domain is a helix-turn-helix suggesting it is likely a DNA-binding transcriptional regulator.


Pssm-ID: 437870  Cd Length: 66  Bit Score: 58.61  E-value: 2.69e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 657013756  12 DELIGSREASLMWGKQKDYVR---TIYNKYPKRFPEGTIRKFGKQLVVTRDGMEKVTG 66
Cdd:pfam20038  5 DDVMTTAEAAERWGVSDDTVKqacTGRKGKPPRFTAGEARKSGKVWLVTRAGMERVYG 62
 
Name Accession Description Interval E-value
HTH_59 pfam20038
Helix-turn-helix domain; This family of proteins is functionally uncharacterized. This family ...
 12-66 2.69e-13

Helix-turn-helix domain; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 63 and 82 amino acids in length. This domain is a helix-turn-helix suggesting it is likely a DNA-binding transcriptional regulator.


Pssm-ID: 437870  Cd Length: 66  Bit Score: 58.61  E-value: 2.69e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 657013756  12 DELIGSREASLMWGKQKDYVR---TIYNKYPKRFPEGTIRKFGKQLVVTRDGMEKVTG 66
Cdd:pfam20038  5 DDVMTTAEAAERWGVSDDTVKqacTGRKGKPPRFTAGEARKSGKVWLVTRAGMERVYG 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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