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Conserved domains on  [gi|737687139|ref|WP_035656187|]
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tetratricopeptide repeat protein, partial [Bradyrhizobium sp. STM 3809]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 1000094)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
50-268 3.23e-31

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 118.96  E-value: 3.23e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  50 LALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALT 129
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 130 SLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPRHMQATFGKGLVSVNLRHL 209
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 737687139 210 EQALAAFNAALAIKPGMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWLGKA 268
Cdd:COG0457  161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 224-333 5.49e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 62.72  E-value: 5.49e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 224 PGMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPASEVALVWLGA 303
Cdd:COG4235   14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93

                         90       100       110
                 ....*....|....*....|....*....|
gi 737687139 304 CLAKQGDTAGAIRHFDRALEIKPDFEDAIL 333
Cdd:COG4235   94 AAFQQGDYAEAIAAWQKLLALLPADAPARL 123
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
50-268 3.23e-31

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 118.96  E-value: 3.23e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  50 LALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALT 129
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 130 SLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPRHMQATFGKGLVSVNLRHL 209
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 737687139 210 EQALAAFNAALAIKPGMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWLGKA 268
Cdd:COG0457  161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 58-335 6.03e-23

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 100.93  E-value: 6.03e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   58 EALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMN 137
Cdd:TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  138 MQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPRHMQATFGKGLVSVNLRHLEQALAAFN 217
Cdd:TIGR02917 206 LGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQ 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  218 AALAIKPGMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPASEVA 297
Cdd:TIGR02917 286 DALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAA 365

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 737687139  298 LVWLGACLAKQGDTAGAIRHFDRALEIKPDFEDAILKK 335
Cdd:TIGR02917 366 LSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQL 403
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 224-333 5.49e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 62.72  E-value: 5.49e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 224 PGMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPASEVALVWLGA 303
Cdd:COG4235   14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93

                         90       100       110
                 ....*....|....*....|....*....|
gi 737687139 304 CLAKQGDTAGAIRHFDRALEIKPDFEDAIL 333
Cdd:COG4235   94 AAFQQGDYAEAIAAWQKLLALLPADAPARL 123
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 24-188 8.93e-08

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 53.02  E-value: 8.93e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  24 DGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAE------AQ--- 94
Cdd:cd24142    1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYekylylGQlsg 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  95 ANLGLVLFS-----MKRY-----EEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIE-----MHDRAVALKPDFA 159
Cdd:cd24142   81 GEEALQYYEkgieiLEEElqalqAASAEAEEEAEELKRKLSSALCALAEIYMTDLCDEPDAEqrceeLITKALELDPTNP 160

                        170       180       190
                 ....*....|....*....|....*....|.
gi 737687139 160 DAYCNrgMAQLLL--HRNEEARQSFDRALAL 188
Cdd:cd24142  161 EALQT--LASLRIsqQRPDEAKEALRRSLEL 189
TPR_1 pfam00515
Tetratricopeptide repeat;
159-192 5.63e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.71  E-value: 5.63e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 737687139  159 ADAYCNRGMAQLLLHRNEEARQSFDRALALAPRH 192
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 64-204 1.96e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.53  E-value: 1.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   64 GASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNfaaaLTSLG--NTLMNMQLF 141
Cdd:PRK11447  276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH----SSNRDkwESLLKVNRY 351

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 737687139  142 APAIEMHDRAV--------------ALKPDFADAYCNRGMAQLLL--HRNEEARQSFDRALALAPRHMQATfgKGLVSV 204
Cdd:PRK11447  352 WLLIQQGDAALkannlaqaerlyqqARQVDNTDSYAVLGLGDVAMarKDYAAAERYYQQALRMDPGNTNAV--RGLANL 428
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 159-192 1.96e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 1.96e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 737687139   159 ADAYCNRGMAQLLLHRNEEARQSFDRALALAPRH 192
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 265-327 2.95e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.23  E-value: 2.95e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 737687139 265 LGKAHVCVLTERIAPAMLACKRVLEQNPASEVALVWLGACLAKQGDTAGAIRHFDRALEIKPD 327
Cdd:cd24142    4 LEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
TPR_1 pfam00515
Tetratricopeptide repeat;
297-328 3.30e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.79  E-value: 3.30e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 737687139  297 ALVWLGACLAKQGDTAGAIRHFDRALEIKPDF 328
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 297-328 3.02e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 3.02e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 737687139   297 ALVWLGACLAKQGDTAGAIRHFDRALEIKPDF 328
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
50-268 3.23e-31

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 118.96  E-value: 3.23e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  50 LALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALT 129
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 130 SLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPRHMQATFGKGLVSVNLRHL 209
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 737687139 210 EQALAAFNAALAIKPGMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWLGKA 268
Cdd:COG0457  161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 8-195 1.93e-29

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 119.71  E-value: 1.93e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   8 RAFQNARLQKKNRKQADGLLPKAVEAYRAGRHADAQAVCGQVLALV----PDHFEALHLLGASALDSGRLDLAEQALARA 83
Cdd:COG3914   25 ELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAaaalLLLAALLELAALLLQALGRYEEALALYRRA 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  84 VALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYC 163
Cdd:COG3914  105 LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184

                        170       180       190
                 ....*....|....*....|....*....|..
gi 737687139 164 NRGMAQLLLHRNEEARQSFDRALALAPRHMQA 195
Cdd:COG3914  185 NLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 13-165 3.89e-29

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 118.94  E-value: 3.89e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  13 ARLQKKNRKQADGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAE 92
Cdd:COG3914   68 AAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE 147

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 737687139  93 AQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNR 165
Cdd:COG3914  148 AYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 30-384 9.34e-29

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 117.79  E-value: 9.34e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  30 AVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLGLV--------- 100
Cdd:COG3914    8 ALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAallelaall 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 101 LFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQ 180
Cdd:COG3914   88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 181 SFDRALALAPRHmqatfgkglvsvnlrhleqalaafnaalaikpgmAAVIAQRGRLYVQMGRFDQAEADFDAALAIDrgl 260
Cdd:COG3914  168 ALRRALELDPDN----------------------------------AEALNNLGNALQDLGRLEEAIAAYRRALELD--- 210

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 261 etawlgkahvcvlteriapamlackrvleqnPASEVALVWLGACLAKQGDTAGAIRHFDRALEIKpdfEDAILKKIFALD 340
Cdd:COG3914  211 -------------------------------PDNADAHSNLLFALRQACDWEVYDRFEELLAALA---RGPSELSPFALL 256

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 737687139 341 FYPGADVAVHQAVRREWWERIGARI-PQRQLGPIDRDPNRRITVG 384
Cdd:COG3914  257 YLPDDDPAELLALARAWAQLVAAAAaPELPPPPNPRDPDRKLRIG 301
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
19-195 3.58e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 110.87  E-value: 3.58e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  19 NRKQADGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLG 98
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  99 LVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEA 178
Cdd:COG0457   84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163

                        170
                 ....*....|....*..
gi 737687139 179 RQSFDRALALAPRHMQA 195
Cdd:COG0457  164 LELLEKLEAAALAALLA 180
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 23-291 3.67e-27

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 108.66  E-value: 3.67e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  23 ADGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLF 102
Cdd:COG2956    8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 103 SMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSF 182
Cdd:COG2956   88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 183 DRALALAPRHMQATFGKGLVSVNLRHLEQALAAFNAALAIKPGMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLeT 262
Cdd:COG2956  168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-D 246

                        250       260
                 ....*....|....*....|....*....
gi 737687139 263 AWLGKAHVCVLTERIAPAMLACKRVLEQN 291
Cdd:COG2956  247 LLLALADLLERKEGLEAALALLERQLRRH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
118-333 2.90e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 97.38  E-value: 2.90e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 118 IALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPRHmqatf 197
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD----- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 198 gkglvsvnlrhleqalaafnaalaikpgmAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWLGKAHVCVLTERI 277
Cdd:COG0457   76 -----------------------------AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY 126

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 737687139 278 APAMLACKRVLEQNPASEVALVWLGACLAKQGDTAGAIRHFDRALEIKPDFEDAIL 333
Cdd:COG0457  127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAA 182
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 58-335 6.03e-23

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 100.93  E-value: 6.03e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   58 EALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMN 137
Cdd:TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  138 MQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPRHMQATFGKGLVSVNLRHLEQALAAFN 217
Cdd:TIGR02917 206 LGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQ 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  218 AALAIKPGMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPASEVA 297
Cdd:TIGR02917 286 DALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAA 365

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 737687139  298 LVWLGACLAKQGDTAGAIRHFDRALEIKPDFEDAILKK 335
Cdd:TIGR02917 366 LSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQL 403
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 97-356 2.14e-22

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 95.57  E-value: 2.14e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  97 LGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNE 176
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 177 EARQSFDRALALAPRHMQATFGKGLVSVNLRHLEQALAAFNAALAIKPGMAAVIAQRGRLYVQMGRFDQAEADFDAALAI 256
Cdd:COG2956   94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 257 DRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPASEVALVWLGACLAKQGDTAGAIRHFDRALEIKP--DFEDAILK 334
Cdd:COG2956  174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPsdDLLLALAD 253

                        250       260
                 ....*....|....*....|..
gi 737687139 335 KIFALDFYPGADVAVHQAVRRE 356
Cdd:COG2956  254 LLERKEGLEAALALLERQLRRH 275
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
19-255 1.56e-21

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 91.90  E-value: 1.56e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  19 NRKQADGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALePRHAEAQANLG 98
Cdd:COG4785    2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  99 LVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEA 178
Cdd:COG4785   81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 737687139 179 RQSFDRALALAPRHMQATFGKGLVSVNLRHleqalaafnaalaiKPGMAAVIAQRGRLYVQMGRFDQAEADFDAALA 255
Cdd:COG4785  161 IADLEKALELDPNDPERALWLYLAERKLDP--------------EKALALLLEDWATAYLLQGDTEEARELFKLALA 223
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 15-327 2.31e-20

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 93.22  E-value: 2.31e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   15 LQKKNRKQADGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQ 94
Cdd:TIGR02917 253 LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQAR 332

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   95 ANLGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHR 174
Cdd:TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  175 NEEARQSFDRALALAPRHMQATFGKGLVSVNLRHLEQALAAFNAALAIKPGMAAVIAQRGRLYVQMGRFDQAEADFDAAL 254
Cdd:TIGR02917 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 737687139  255 AIDRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPASEVALVWLGACLAKQGDTAGAIRHFDRALEIKPD 327
Cdd:TIGR02917 493 SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 58-192 7.66e-20

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 84.86  E-value: 7.66e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  58 EALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMN 137
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 737687139 138 MQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPRH 192
Cdd:COG4783   85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 8-190 1.15e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.86  E-value: 1.15e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   8 RAFQNARLQKKNRKQADGLLpkAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALE 87
Cdd:COG2956   63 RIHQKLLERDPDRAEALLEL--AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  88 PRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGM 167
Cdd:COG2956  141 PENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAE 220

                        170       180
                 ....*....|....*....|...
gi 737687139 168 AQLLLHRNEEARQSFDRALALAP 190
Cdd:COG2956  221 LYEKLGDPEEALELLRKALELDP 243
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 17-332 3.85e-19

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 89.37  E-value: 3.85e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   17 KKNRKQADGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQAN 96
Cdd:TIGR02917 187 TADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYL 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   97 LGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNE 176
Cdd:TIGR02917 267 KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVD 346

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  177 EARQSFDRALALAPRHMQATFGKGLVSVNLRHLEQALAAFNAALAIKPGMAAVIAQRGRLYVQMGRFDQAEADFDAALAI 256
Cdd:TIGR02917 347 EAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQL 426

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 737687139  257 DRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPASEVALVWLGACLAKQGDTAGAIRHFDRALEIKPDFEDAI 332
Cdd:TIGR02917 427 DPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 22-158 5.21e-19

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 82.55  E-value: 5.21e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  22 QADGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVL 101
Cdd:COG4783    3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 737687139 102 FSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDF 158
Cdd:COG4783   83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 76-190 7.12e-19

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 81.98  E-value: 7.12e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  76 AEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALK 155
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 737687139 156 PDFADAYCNRGMAQLLLHRNEEARQSFDRALALAP 190
Cdd:COG4235   82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 48-162 1.19e-15

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 73.12  E-value: 1.19e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  48 QVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAA 127
Cdd:COG4235    8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 737687139 128 LTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAY 162
Cdd:COG4235   88 LYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 33-328 1.43e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.59  E-value: 1.43e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   33 AYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARA 112
Cdd:TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA 588

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  113 AQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPRH 192
Cdd:TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  193 MQATFGKGLVSVNLRHLEQALAAFNAALAIKPGMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAwLGKAHVCV 272
Cdd:TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALL 747

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 737687139  273 LTERIAPAMLACKRVLEQNPASEVALVWLGACLAKQGDTAGAIRHFDRALEIKPDF 328
Cdd:TIGR02917 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN 803
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
57-323 1.50e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 74.95  E-value: 1.50e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  57 FEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALkPNFAAALTSLGNTLM 136
Cdd:COG4785    6 LALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYD 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 137 NMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPRHMQATFGKGLVsvnlrhleqalaaf 216
Cdd:COG4785   85 SLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA-------------- 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 217 naalaikpgmaaviaqrgrlYVQMGRFDQAEADFDAALAIDrgletawlgkahvCVLTERIAPAMLACKRVLEQNPASEV 296
Cdd:COG4785  151 --------------------LYYLGRYELAIADLEKALELD-------------PNDPERALWLYLAERKLDPEKALALL 197

                        250       260
                 ....*....|....*....|....*..
gi 737687139 297 ALVWLGACLAkQGDTAGAIRHFDRALE 323
Cdd:COG4785  198 LEDWATAYLL-QGDTEEARELFKLALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 17-127 2.10e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 66.57  E-value: 2.10e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  17 KKNRKQADGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQAN 96
Cdd:COG4235   11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL 90

                         90       100       110
                 ....*....|....*....|....*....|.
gi 737687139  97 LGLVLFSMKRYEEARAAQERAIALKPNFAAA 127
Cdd:COG4235   91 LGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 91-224 1.75e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.06  E-value: 1.75e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  91 AEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQL 170
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 737687139 171 LLHRNEEARQSFDRALALAPRHMQATFGKGLVSVNLRHLEQALAAFNAALAIKP 224
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 158-333 3.51e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 66.29  E-value: 3.51e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 158 FADAYCNRGMAQLLLHRNEEARQSFDRALALAPRHMQATFGKGLVSVNLRHLEQALAAFNAALAIKPGMAAVIAQRGRLY 237
Cdd:COG2956    7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 238 VQMGRFDQAEADFDAALAIDRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPASEVALVWLGACLAKQGDTAGAIRH 317
Cdd:COG2956   87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                        170
                 ....*....|....*.
gi 737687139 318 FDRALEIKPDFEDAIL 333
Cdd:COG2956  167 LEKALKLDPDCARALL 182
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 224-333 5.49e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 62.72  E-value: 5.49e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 224 PGMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPASEVALVWLGA 303
Cdd:COG4235   14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93

                         90       100       110
                 ....*....|....*....|....*....|
gi 737687139 304 CLAKQGDTAGAIRHFDRALEIKPDFEDAIL 333
Cdd:COG4235   94 AAFQQGDYAEAIAAWQKLLALLPADAPARL 123
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 65-324 8.65e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 66.55  E-value: 8.65e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   65 ASALDSGRLDLAEQALARAVALEPRhaeaqanlGLVLFSMKRYEEARAAQERAIALKPnfAAALTSLGNTLMNMQLFAP- 143
Cdd:TIGR00990 313 AARAFEKALDLGKLGEKEAIALNLR--------GTFKCLKGKHLEALADLSKSIELDP--RVTQSYIKRASMNLELGDPd 382

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  144 -AIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPRHMQATFGKGLVSVNLRHLEQALAAFNAALAI 222
Cdd:TIGR00990 383 kAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  223 KPGMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWL------GKAHVCVLT-ERIAPAMLACKRVLEQNPASE 295
Cdd:TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMnvlpliNKALALFQWkQDFIEAENLCEKALIIDPECD 542

                         250       260
                  ....*....|....*....|....*....
gi 737687139  296 VALVWLGACLAKQGDTAGAIRHFDRALEI 324
Cdd:TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
67-157 9.31e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.95  E-value: 9.31e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  67 ALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAqERAIALKPNFAAALTSLGNTLMNMQLFAPAIE 146
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                         90
                 ....*....|.
gi 737687139 147 MHDRAVALKPD 157
Cdd:COG3063   81 YLERALELDPS 91
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
100-194 1.09e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.57  E-value: 1.09e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 100 VLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMhDRAVALKPDFADAYCNRGMAQLLLHRNEEAR 179
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|....*
gi 737687139 180 QSFDRALALAPRHMQ 194
Cdd:COG3063   80 AYLERALELDPSALR 94
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 58-333 1.22e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 66.26  E-value: 1.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   58 EALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMN 137
Cdd:TIGR02917  23 EELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLL 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  138 MQLFAPAIEMHDRAVAL-KPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPRHMQATFGKGLVSVNLRHLEQALAAF 216
Cdd:TIGR02917 103 QGKFQQVLDELPGKTLLdDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALI 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  217 NAALAIKPGMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPASEV 296
Cdd:TIGR02917 183 DEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPL 262

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 737687139  297 ALVWLGACLAKQGDTAGAIRHFDRALEIKPDFEDAIL 333
Cdd:TIGR02917 263 AHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALL 299
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 225-331 1.93e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.36  E-value: 1.93e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 225 GMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPASEVALVWLGAC 304
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                         90       100
                 ....*....|....*....|....*..
gi 737687139 305 LAKQGDTAGAIRHFDRALEIKPDFEDA 331
Cdd:COG4783   82 LLKAGDYDEALALLEKALKLDPEHPEA 108
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 14-124 1.97e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.36  E-value: 1.97e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  14 RLQKKNRKQADGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEA 93
Cdd:COG4783   29 KALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEA 108

                         90       100       110
                 ....*....|....*....|....*....|.
gi 737687139  94 QANLGLVLFSMKRYEEARAAQERAIALKPNF 124
Cdd:COG4783  109 YLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 125-257 1.07e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.05  E-value: 1.07e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 125 AAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPRHMQATFGKGLVSV 204
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 737687139 205 NLRHLEQALAAFNAALAIKPGMAAVIAQRGRLYVQMGRFDQAEADFDAALAID 257
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
223-333 1.08e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 61.08  E-value: 1.08e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 223 KPGMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPASEVALVWLG 302
Cdd:COG4785   69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRG 148

                         90       100       110
                 ....*....|....*....|....*....|.
gi 737687139 303 ACLAKQGDTAGAIRHFDRALEIKPDFEDAIL 333
Cdd:COG4785  149 IALYYLGRYELAIADLEKALELDPNDPERAL 179
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
33-123 1.11e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.87  E-value: 1.11e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  33 AYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQaLARAVALEPRHAEAQANLGLVLFSMKRYEEARA 112
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                         90
                 ....*....|.
gi 737687139 113 AQERAIALKPN 123
Cdd:COG3063   81 YLERALELDPS 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
17-189 1.16e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.18  E-value: 1.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  17 KKNRKQADGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQAN 96
Cdd:COG0457   70 ELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYN 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  97 LGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNE 176
Cdd:COG0457  150 LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229

                        170
                 ....*....|...
gi 737687139 177 EARQSFDRALALA 189
Cdd:COG0457  230 LLALRLAALALYQ 242
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 48-190 1.19e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.59  E-value: 1.19e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  48 QVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAA 127
Cdd:COG5010   11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 737687139 128 LTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAP 190
Cdd:COG5010   91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 109-211 1.36e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.48  E-value: 1.36e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 109 EARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALAL 188
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100
                 ....*....|....*....|...
gi 737687139 189 APRHMQATFGKGLVSVNLRHLEQ 211
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAE 103
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 224-328 6.33e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.12  E-value: 6.33e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 224 PGMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPASEVALVWLGA 303
Cdd:COG4783   35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLAR 114

                         90       100
                 ....*....|....*....|....*
gi 737687139 304 CLAKQGDTAGAIRHFDRALEIKPDF 328
Cdd:COG4783  115 AYRALGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 9-156 7.30e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 57.28  E-value: 7.30e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   9 AFQNARLQKKNRKQADGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEP 88
Cdd:COG5010    6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 737687139  89 RHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKP 156
Cdd:COG5010   86 NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
236-327 1.35e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 54.79  E-value: 1.35e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 236 LYVQMGRFDQAEADFDAALAIDRGLETAWLGKAHVCVLTERIAPAmLACKRVLEQNPASEVALVWLGACLAKQGDTAGAI 315
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|..
gi 737687139 316 RHFDRALEIKPD 327
Cdd:COG3063   80 AYLERALELDPS 91
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 14-327 2.12e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 59.33  E-value: 2.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   14 RLQKKNRKQADGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEA 93
Cdd:TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   94 QANLGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLH 173
Cdd:TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  174 RNEEARQSFDRALALAPRHmQATFGKGLVSVNLRHLEQALAAFNAALAIKPGMAAVIAQRGRLYVQMGRFDQAEADFDAA 253
Cdd:TIGR02917 718 DYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTV 796

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  254 L-------AIDRGLetAWLgkahvcvLTERIAP-AMLACKRVLEQNPASEVALVWLGACLAKQGDTAGAIRHFDRALEIK 325
Cdd:TIGR02917 797 VkkapdnaVVLNNL--AWL-------YLELKDPrALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867


                  ..
gi 737687139  326 PD 327
Cdd:TIGR02917 868 PE 869
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 31-127 2.23e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 51.92  E-value: 2.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  31 VEAYRAGRHADAQAVCGQVLALVPDHF---EALHLLGASALDSGRLDLAEQALARAVALEPRH---AEAQANLGLVLFSM 104
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLEL 80

                         90       100
                 ....*....|....*....|...
gi 737687139 105 KRYEEARAAQERAIALKPNFAAA 127
Cdd:COG1729   81 GDYDKARATLEELIKKYPDSEAA 103
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 35-187 2.57e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.86  E-value: 2.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   35 RAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRyEEARAAQ 114
Cdd:TIGR02917 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA 826

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 737687139  115 ERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALA 187
Cdd:TIGR02917 827 ERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 159-294 2.76e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.12  E-value: 2.76e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 159 ADAYCNRGMAQLLLHRNEEARQSFDRALALAPRHMQATFGKGLVSVNLRHLEQALAAFNAALAIKPGMAAVIAQRGRLYV 238
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 737687139 239 QMGRFDQAEADFDAALAIDRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPAS 294
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 24-188 8.93e-08

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 53.02  E-value: 8.93e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  24 DGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAE------AQ--- 94
Cdd:cd24142    1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYekylylGQlsg 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  95 ANLGLVLFS-----MKRY-----EEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIE-----MHDRAVALKPDFA 159
Cdd:cd24142   81 GEEALQYYEkgieiLEEElqalqAASAEAEEEAEELKRKLSSALCALAEIYMTDLCDEPDAEqrceeLITKALELDPTNP 160

                        170       180       190
                 ....*....|....*....|....*....|.
gi 737687139 160 DAYCNrgMAQLLL--HRNEEARQSFDRALAL 188
Cdd:cd24142  161 EALQT--LASLRIsqQRPDEAKEALRRSLEL 189
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 139-325 1.30e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 53.45  E-value: 1.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  139 QLFAPAIEMHDravaLKPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPRHMQATFGKGLVSVNLRHLEQALAAFNA 218
Cdd:TIGR00990 315 RAFEKALDLGK----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  219 ALAIKPGMAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPASEVAL 298
Cdd:TIGR00990 391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVY 470

                         170       180
                  ....*....|....*....|....*..
gi 737687139  299 VWLGACLAKQGDTAGAIRHFDRALEIK 325
Cdd:TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELE 497
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 144-257 4.99e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.46  E-value: 4.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 144 AIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPRHMQATFGKGLVSVNLRHLEQALAAFNAALAIK 223
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                         90       100       110
                 ....*....|....*....|....*....|....
gi 737687139 224 PGMAAVIAQRGRLYVQMGRFDQAEADFDAALAID 257
Cdd:COG4235   82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 66-157 1.95e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.14  E-value: 1.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  66 SALDSGRLDLAEQALARAVALEPRH---AEAQANLGLVLFSMKRYEEARAAQERAIALKPN---FAAALTSLGNTLMNMQ 139
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELG 81

                         90
                 ....*....|....*...
gi 737687139 140 LFAPAIEMHDRAVALKPD 157
Cdd:COG1729   82 DYDKARATLEELIKKYPD 99
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
135-260 6.58e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.39  E-value: 6.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 135 LMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQsFDRALALAPRHmqatfgkglvsvnlrhleqala 214
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNN---------------------- 58

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 737687139 215 afnaalaikpgmAAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGL 260
Cdd:COG3063   59 ------------AEALLNLAELLLELGDYDEALAYLERALELDPSA 92
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 8-95 8.41e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.00  E-value: 8.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   8 RAFQNArlQKKNRKQADGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALE 87
Cdd:COG4235   38 AAYEKA--LRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115


                 ....*...
gi 737687139  88 PRHAEAQA 95
Cdd:COG4235  116 PADAPARL 123
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 72-224 8.46e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 8.46e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  72 RLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRA 151
Cdd:COG5010    1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 737687139 152 VALKPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPRHMQATFGKGLVSVNLRHLEQALAAFNAALAIKP 224
Cdd:COG5010   81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 101-195 9.84e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 44.21  E-value: 9.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 101 LFSMKRYEEARAAQERAIALKPN---FAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPD---FADAYCNRGMAQLLLHR 174
Cdd:COG1729    3 LLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGD 82

                         90       100
                 ....*....|....*....|.
gi 737687139 175 NEEARQSFDRALALAPRHMQA 195
Cdd:COG1729   83 YDKARATLEELIKKYPDSEAA 103
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 227-326 1.54e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.57  E-value: 1.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 227 AAVIAQRGRLYVQMGRFDQAEADFDAALAIDRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPASEVALVWLGACLA 306
Cdd:COG5010   54 FAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133

                         90       100
                 ....*....|....*....|
gi 737687139 307 KQGDTAGAIRHFDRALEIKP 326
Cdd:COG5010  134 SLGQDDEAKAALQRALGTSP 153
TPR_1 pfam00515
Tetratricopeptide repeat;
159-192 5.63e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.71  E-value: 5.63e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 737687139  159 ADAYCNRGMAQLLLHRNEEARQSFDRALALAPRH 192
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 106-257 7.62e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 7.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 106 RYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRA 185
Cdd:COG5010    1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 737687139 186 LALAPRHMQATFGKGLVSVNLRHLEQALAAFNAALAIKPGMAAVIAQRGRLYVQMGRFDQAEADFDAALAID 257
Cdd:COG5010   81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_1 pfam00515
Tetratricopeptide repeat;
91-124 7.94e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.33  E-value: 7.94e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 737687139   91 AEAQANLGLVLFSMKRYEEARAAQERAIALKPNF 124
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 17-255 9.28e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.69  E-value: 9.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   17 KKNRKQADGLLPKAVEayRAGRHADAQAVCGQVLALVPDHFEALH-----------------LLGASALDSGRLDLAEQA 79
Cdd:TIGR02917 648 MKNYAKAITSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKKiakslqkqhpkaalgfeLEGDLYLRQKDYPAAIQA 725

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   80 LARAVALEPrHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFA 159
Cdd:TIGR02917 726 YRKALKRAP-SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNA 804

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  160 DAYCNrgMAQLLLHR-NEEARQSFDRALALAPRHMQA--TFGKGLVSVN-----LRHLEQALAAFNAALAIKPGMAAVia 231
Cdd:TIGR02917 805 VVLNN--LAWLYLELkDPRALEYAERALKLAPNIPAIldTLGWLLVEKGeadraLPLLRKAVNIAPEAAAIRYHLALA-- 880

                         250       260
                  ....*....|....*....|....
gi 737687139  232 qrgrlYVQMGRFDQAEADFDAALA 255
Cdd:TIGR02917 881 -----LLATGRKAEARKELDKLLN 899
TPR_11 pfam13414
TPR repeat;
98-139 1.13e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.99  E-value: 1.13e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 737687139   98 GLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQ 139
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_12 pfam13424
Tetratricopeptide repeat;
59-123 1.69e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 39.68  E-value: 1.69e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 737687139   59 ALHLLGASALDSGRLDLAEQALARAVAL-----EPRH---AEAQANLGLVLFSMKRYEEARAAQERAIALKPN 123
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllGPDHpltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 64-204 1.96e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.53  E-value: 1.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   64 GASALDSGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNfaaaLTSLG--NTLMNMQLF 141
Cdd:PRK11447  276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH----SSNRDkwESLLKVNRY 351

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 737687139  142 APAIEMHDRAV--------------ALKPDFADAYCNRGMAQLLL--HRNEEARQSFDRALALAPRHMQATfgKGLVSV 204
Cdd:PRK11447  352 WLLIQQGDAALkannlaqaerlyqqARQVDNTDSYAVLGLGDVAMarKDYAAAERYYQQALRMDPGNTNAV--RGLANL 428
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 159-192 1.96e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 1.96e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 737687139   159 ADAYCNRGMAQLLLHRNEEARQSFDRALALAPRH 192
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 107-190 2.91e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 42.47  E-value: 2.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 107 YEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYCNRGMAQLLLHRNEEARQSFDRAL 186
Cdd:PLN03088  18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97


                 ....
gi 737687139 187 ALAP 190
Cdd:PLN03088  98 SLAP 101
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 265-327 2.95e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.23  E-value: 2.95e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 737687139 265 LGKAHVCVLTERIAPAMLACKRVLEQNPASEVALVWLGACLAKQGDTAGAIRHFDRALEIKPD 327
Cdd:cd24142    4 LEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
TPR_1 pfam00515
Tetratricopeptide repeat;
297-328 3.30e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.79  E-value: 3.30e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 737687139  297 ALVWLGACLAKQGDTAGAIRHFDRALEIKPDF 328
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 6-261 3.97e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 42.28  E-value: 3.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139    6 GSRAFQNA-RLQKKNRKQADGLLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAV 84
Cdd:TIGR00990 313 AARAFEKAlDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKAL 392

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   85 ALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFADAYcn 164
Cdd:TIGR00990 393 KLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVY-- 470

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  165 RGMAQLLLHRN--EEARQSFDRALALA----PRHMQAT--FGKGLVSVNLRH-LEQALAAFNAALAIKPGMAAVIAQRGR 235
Cdd:TIGR00990 471 NYYGELLLDQNkfDEAIEKFDTAIELEketkPMYMNVLplINKALALFQWKQdFIEAENLCEKALIIDPECDIAVATMAQ 550

                         250       260
                  ....*....|....*....|....*.
gi 737687139  236 LYVQMGRFDQAEADFDAALAIDRGLE 261
Cdd:TIGR00990 551 LLLQQGDVDEALKLFERAAELARTEG 576
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
222-293 4.33e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.00  E-value: 4.33e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 737687139 222 IKPGMAAVIAQRGRLYVQMGRFDQAEAdFDAALAIDRGLETAWLGKAHVCVLTERIAPAMLACKRVLEQNPA 293
Cdd:COG3063   21 LDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
TPR_8 pfam13181
Tetratricopeptide repeat;
91-123 4.88e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 36.99  E-value: 4.88e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 737687139   91 AEAQANLGLVLFSMKRYEEARAAQERAIALKPN 123
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 26-339 9.17e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 41.61  E-value: 9.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   26 LLPKAVEAYRAGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPrhAEAQANLGLV-LFSM 104
Cdd:PRK11447  354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP--GNTNAVRGLAnLYRQ 431

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  105 KRYEEARA-------AQERAIA--LKPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDfaDAYCNRGMAQLLLH-- 173
Cdd:PRK11447  432 QSPEKALAfiaslsaSQRRSIDdiERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG--SVWLTYRLAQDLRQag 509

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  174 RNEEARQSFDRALALAPRHMQATFGKGL-VSVNLRHleqalaafnaalaikpgmAAVIAQRGRLyvQMGRFDQAEADFDA 252
Cdd:PRK11447  510 QRSQADALMRRLAQQKPNDPEQVYAYGLyLSGSDRD------------------RAALAHLNTL--PRAQWNSNIQELAQ 569

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  253 ALAIDRGLETAWLGKAHVcvlTERIAPAMlackrvLEQNPASEVALVWLGACLAKQGDTAGAIRHFDRALEIKPDFEDAI 332
Cdd:PRK11447  570 RLQSDQVLETANRLRDSG---KEAEAEAL------LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADAR 640


                  ....*..
gi 737687139  333 LKKIFAL 339
Cdd:PRK11447  641 LGLIEVD 647
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 121-195 9.65e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.12  E-value: 9.65e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 737687139  121 KPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPDFAdAYCNRGMAQLLLHRNEEARQSFDRALALAPRHMQA 195
Cdd:TIGR00990 123 RKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA 196
TPR_19 pfam14559
Tetratricopeptide repeat;
36-95 1.07e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 1.07e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139   36 AGRHADAQAVCGQVLALVPDHFEALHLLGASALDSGRLDLAEQALARAVALEPRHAEAQA 95
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 235-335 1.14e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.43  E-value: 1.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 235 RLYVQMGRFDQAEADFDAALAIDRGLETA-----WLGKAHVcvLTERIAPAMLACKRVLEQNPASEV---ALVWLGACLA 306
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSPLApdalyWLGEAYY--ALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYL 78

                         90       100
                 ....*....|....*....|....*....
gi 737687139 307 KQGDTAGAIRHFDRALEIKPDFEDAILKK 335
Cdd:COG1729   79 ELGDYDKARATLEELIKKYPDSEAAKEAR 107
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 91-123 1.59e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.58  E-value: 1.59e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 737687139   91 AEAQANLGLVLFSMKRYEEARAAQERAIALKPN 123
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_12 pfam13424
Tetratricopeptide repeat;
91-157 2.39e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.60  E-value: 2.39e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 737687139   91 AEAQANLGLVLFSMKRYEEARAAQERAIAL--------KPNFAAALTSLGNTLMNMQLFAPAIEMHDRAVALKPD 157
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PRK12370 PRK12370
HilA/EilA family virulence transcriptional regulator;
93-199 2.42e-03

HilA/EilA family virulence transcriptional regulator;


Pssm-ID: 237080 [Multi-domain]  Cd Length: 553  Bit Score: 39.84  E-value: 2.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139  93 AQANLGLvlFSMKR-YEEARAAQERAIALKPNFAAALTSLG--NTLMNMQLFAPAieMHDRAVALKPDFADAYCNRGMAQ 169
Cdd:PRK12370 307 SMAQMGI--FDKQNaMIKAKEHAIKATELDHNNPQALGLLGliNTIHSEYIVGSL--LFKQANLLSPISADIKYYYGWNL 382

                         90       100       110
                 ....*....|....*....|....*....|
gi 737687139 170 LLLHRNEEARQSFDRALALAPRHMQATFGK 199
Cdd:PRK12370 383 FMAGQLEEALQTINECLKLDPTRAAAGITK 412
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 297-328 3.02e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 3.02e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 737687139   297 ALVWLGACLAKQGDTAGAIRHFDRALEIKPDF 328
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 91-124 3.24e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 3.24e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 737687139    91 AEAQANLGLVLFSMKRYEEARAAQERAIALKPNF 124
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 297-327 5.02e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.42  E-value: 5.02e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 737687139  297 ALVWLGACLAKQGDTAGAIRHFDRALEIKPD 327
Cdd:pfam07719   3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 62-123 5.88e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 35.00  E-value: 5.88e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 737687139   62 LLGASALDSGRLDLAEQALARAVALE---PRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPN 123
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
TPR_19 pfam14559
Tetratricopeptide repeat;
70-127 6.91e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 34.87  E-value: 6.91e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 737687139   70 SGRLDLAEQALARAVALEPRHAEAQANLGLVLFSMKRYEEARAAQERAIALKPNFAAA 127
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 159-191 7.16e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.04  E-value: 7.16e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 737687139  159 ADAYCNRGMAQLLLHRNEEARQSFDRALALAPR 191
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_12 pfam13424
Tetratricopeptide repeat;
125-191 8.09e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.06  E-value: 8.09e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 737687139  125 AAALTSLGNTLMNMQLFAPAIEMHDRAVAL--------KPDFADAYCNRGMAQLLLHRNEEARQSFDRALALAPR 191
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 227-258 8.33e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.57  E-value: 8.33e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 737687139   227 AAVIAQRGRLYVQMGRFDQAEADFDAALAIDR 258
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 280-356 8.66e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.14  E-value: 8.66e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737687139 280 AMLACKRVLEQNPASEVALVWLGACLAKQGDTAGAIRHFDRALEIKPDFEDAILKKIFAL---DFYPGADVAVHQAVRRE 356
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALlaaGDTEEAEELLERALALD 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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