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Conserved domains on  [gi|742942142|ref|WP_039026397|]
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MULTISPECIES: IS3 family transposase [Gammaproteobacteria]

Protein Classification

transposase( domain architecture ID 11457951)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0032196|GO:0003677|GO:0015074|GO:0006310

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
16-273 5.53e-68

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


:

Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 213.09  E-value: 5.53e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142  16 VSVSKLCRWFGLPRRSWYYRSVKAAPKLQEHLVTPIKNMIEENPSFGYRTVAALL---GF--NKNTVQRIFQLKGWQVRK 90
Cdd:COG2801   42 LLRLLRRRRARSRRRRRLRRPRSYRADEDAELLERIKEIFAESPRYGYRRITAELrreGIavNRKRVRRLMRELGLQARR 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142  91 RPVGFR--------PRIQALPSVASAPNQRWATDLCRIWAGrDGWCSLALVIDCHTRELLGWHLSRSGKSKTAEAALEQA 162
Cdd:COG2801  122 RRKKKYttysghggPIAPNLLFTATAPNQVWVTDITYIPTA-EGWLYLAAVIDLFSREIVGWSVSDSMDAELVVDALEMA 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 163 LIARfgslgRVASPFLLRSDNGLVFTSRNYTALVKSYGLQQEFITPYTPEQNGMVERVIRTLKEQCAHRQRFETLQHASR 242
Cdd:COG2801  201 IERR-----GPPKPLILHSDNGSQYTSKAYQELLKKLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEARE 275

                        250       260       270
                 ....*....|....*....|....*....|.
gi 742942142 243 VIGDWIQFYNQKRPHQALKMKTPAQAYAEAA 273
Cdd:COG2801  276 AIEEYIEFYNHERPHSSLGYLTPAEYEKQLA 306
 
Name Accession Description Interval E-value
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
16-273 5.53e-68

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 213.09  E-value: 5.53e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142  16 VSVSKLCRWFGLPRRSWYYRSVKAAPKLQEHLVTPIKNMIEENPSFGYRTVAALL---GF--NKNTVQRIFQLKGWQVRK 90
Cdd:COG2801   42 LLRLLRRRRARSRRRRRLRRPRSYRADEDAELLERIKEIFAESPRYGYRRITAELrreGIavNRKRVRRLMRELGLQARR 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142  91 RPVGFR--------PRIQALPSVASAPNQRWATDLCRIWAGrDGWCSLALVIDCHTRELLGWHLSRSGKSKTAEAALEQA 162
Cdd:COG2801  122 RRKKKYttysghggPIAPNLLFTATAPNQVWVTDITYIPTA-EGWLYLAAVIDLFSREIVGWSVSDSMDAELVVDALEMA 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 163 LIARfgslgRVASPFLLRSDNGLVFTSRNYTALVKSYGLQQEFITPYTPEQNGMVERVIRTLKEQCAHRQRFETLQHASR 242
Cdd:COG2801  201 IERR-----GPPKPLILHSDNGSQYTSKAYQELLKKLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEARE 275

                        250       260       270
                 ....*....|....*....|....*....|.
gi 742942142 243 VIGDWIQFYNQKRPHQALKMKTPAQAYAEAA 273
Cdd:COG2801  276 AIEEYIEFYNHERPHSSLGYLTPAEYEKQLA 306
transpos_IS3 NF033516
IS3 family transposase;
9-269 2.32e-65

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 208.19  E-value: 2.32e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142   9 LRAEGIDVSVSKLCRWFGLPRRSWYYRSVKAAPKLQ---EHLVTPIKNMIEENP-SFGYRTVAALL---GF--NKNTVQR 79
Cdd:NF033516  94 IDALRGEYSVRRACRVLGVSRSTYYYWRKRPPSRRApddAELRARIREIFEESRgRYGYRRITALLrreGIrvNHKRVYR 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142  80 IFQ---LKGWQVRKRPVGFRPRIQALPSV---------ASAPNQRWATDLCRIWAGrDGWCSLALVIDCHTRELLGWHLS 147
Cdd:NF033516 174 LMRelgLLARRRRKRRPYTTDSGHVHPVApnllnrqftATRPNQVWVTDITYIRTA-EGWLYLAVVLDLFSREIVGWSVS 252

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 148 RSGKSKTAEAALEQALIARfgslgRVASPFLLRSDNGLVFTSRNYTALVKSYGLQQEFITPYTPEQNGMVERVIRTLKEQ 227
Cdd:NF033516 253 TSMSAELVLDALEMAIEWR-----GKPEGLILHSDNGSQYTSKAYREWLKEHGITQSMSRPGNCWDNAVAESFFGTLKRE 327

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 742942142 228 CAHRQRFETLQHASRVIGDWIQFYNQKRPHQALKMKTPAQAY 269
Cdd:NF033516 328 CLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
transpos_IS481 NF033577
IS481 family transposase; null
 17-269 1.98e-31

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 117.69  E-value: 1.98e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142  17 SVSKLCRWFGLPRRS---WYYRSVKA----------APKLQEHLVTP-----IKNMIEENpSFGYRTVAALL-----GFN 73
Cdd:NF033577  15 SVREAARRFGISRKTvykWLKRYRAGgeeglidrsrRPHRSPRRTSPetearILALRREL-RLGPRRIAYELerqgpGVS 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142  74 KNTVQRIFQ---LKGWQVRKRPVGFRPRIQAlpsvaSAPNQRWATDLCRIWAGRD-GWCSLALVIDCHTRellgWHLSRS 149
Cdd:NF033577  94 RSTVHRILRrhgLSRLRALDRKTGKVKRYER-----AHPGELWHIDIKKLGRIPDvGRLYLHTAIDDHSR----FAYAEL 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 150 GKSKTAEAALE--QALIARFG-SLGRVaspfllRSDNGLVFTSR--NYTALVKSYGLQQEFITPYTPEQNGMVERVIRTL 224
Cdd:NF033577 165 YPDETAETAADflRRAFAEHGiPIRRV------LTDNGSEFRSRahGFELALAELGIEHRRTRPYHPQTNGKVERFHRTL 238

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 742942142 225 KEQCAHRQRFETLQHASRVIGDWIQFYNQKRPHQALKMKTPAQAY 269
Cdd:NF033577 239 KDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAERF 283
PHA02517 PHA02517
putative transposase OrfB; Reviewed
 105-268 1.29e-30

putative transposase OrfB; Reviewed


Pssm-ID: 222853 [Multi-domain]  Cd Length: 277  Bit Score: 115.35  E-value: 1.29e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 105 VASAPNQRWATDLCRIWAGRdGWCSLALVIDCHTRELLGWHLSRSGKSKTAEAALEQALIARfgslgRVASPFLLRSDNG 184
Cdd:PHA02517 105 VATRPNQLWVADFTYVSTWQ-GWVYVAFIIDVFARRIVGWRVSSSMDTDFVLDALEQALWAR-----GRPGGLIHHSDKG 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 185 LVFTSRNYTALVKSYGLQQEFITPYTPEQNGMVERVIRTLKEQCAHRQRFETLQHASRVIGDWIQFYNQKRPHQALKMKT 264
Cdd:PHA02517 179 SQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTP 258


                 ....
gi 742942142 265 PAQA 268
Cdd:PHA02517 259 PAEA 262
rve_3 pfam13683
Integrase core domain;
199-265 2.76e-21

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 84.58  E-value: 2.76e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 742942142  199 YGLQQEFITPYTPEQNGMVERVIRTLKEQCAHRQRFETLQHASRVIGDWIQFYNQKRPHQALKMKTP 265
Cdd:pfam13683   1 LGIEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
transpos_IS21 NF033546
IS21 family transposase;
152-271 1.10e-05

IS21 family transposase;


Pssm-ID: 468077 [Multi-domain]  Cd Length: 296  Bit Score: 45.66  E-value: 1.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 152 SKTAEAaLEQALIARFGSLGRVasPFLLRSDN------------GLVFTSRnYTALVKSYGLQQEFITPYTPEQNGMVER 219
Cdd:NF033546 158 SESQED-LLDGHQRAFEFFGGV--PREIVYDNlktavdkrdryeEPRLNPR-FAAFAAHYGFEPRPCRPYRPQEKGKVER 233

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 742942142 220 VIRTLKEQC--AHRQRFETLQHASRVIGDWIQFYNQKRPHQALKmKTPAQAYAE 271
Cdd:NF033546 234 AVGYVRRWFlrLRGRRFESLAELNAALAEWLAELANQRPHGTTG-GSPAERFEE 286
transpos_IS630 NF033545
IS630 family transposase;
205-249 6.09e-04

IS630 family transposase;


Pssm-ID: 468076 [Multi-domain]  Cd Length: 298  Bit Score: 40.70  E-value: 6.09e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 742942142 205 FITPYTPEQNgMVERVIRTLKEQCAHRQRFETLQHASRVIGDWIQ 249
Cdd:NF033545 254 YLPPYSPWLN-PIERVWAVLKRRLLRNRAFRSVDELREAIDAFLN 297
 
Name Accession Description Interval E-value
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
16-273 5.53e-68

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 213.09  E-value: 5.53e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142  16 VSVSKLCRWFGLPRRSWYYRSVKAAPKLQEHLVTPIKNMIEENPSFGYRTVAALL---GF--NKNTVQRIFQLKGWQVRK 90
Cdd:COG2801   42 LLRLLRRRRARSRRRRRLRRPRSYRADEDAELLERIKEIFAESPRYGYRRITAELrreGIavNRKRVRRLMRELGLQARR 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142  91 RPVGFR--------PRIQALPSVASAPNQRWATDLCRIWAGrDGWCSLALVIDCHTRELLGWHLSRSGKSKTAEAALEQA 162
Cdd:COG2801  122 RRKKKYttysghggPIAPNLLFTATAPNQVWVTDITYIPTA-EGWLYLAAVIDLFSREIVGWSVSDSMDAELVVDALEMA 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 163 LIARfgslgRVASPFLLRSDNGLVFTSRNYTALVKSYGLQQEFITPYTPEQNGMVERVIRTLKEQCAHRQRFETLQHASR 242
Cdd:COG2801  201 IERR-----GPPKPLILHSDNGSQYTSKAYQELLKKLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEARE 275

                        250       260       270
                 ....*....|....*....|....*....|.
gi 742942142 243 VIGDWIQFYNQKRPHQALKMKTPAQAYAEAA 273
Cdd:COG2801  276 AIEEYIEFYNHERPHSSLGYLTPAEYEKQLA 306
transpos_IS3 NF033516
IS3 family transposase;
9-269 2.32e-65

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 208.19  E-value: 2.32e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142   9 LRAEGIDVSVSKLCRWFGLPRRSWYYRSVKAAPKLQ---EHLVTPIKNMIEENP-SFGYRTVAALL---GF--NKNTVQR 79
Cdd:NF033516  94 IDALRGEYSVRRACRVLGVSRSTYYYWRKRPPSRRApddAELRARIREIFEESRgRYGYRRITALLrreGIrvNHKRVYR 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142  80 IFQ---LKGWQVRKRPVGFRPRIQALPSV---------ASAPNQRWATDLCRIWAGrDGWCSLALVIDCHTRELLGWHLS 147
Cdd:NF033516 174 LMRelgLLARRRRKRRPYTTDSGHVHPVApnllnrqftATRPNQVWVTDITYIRTA-EGWLYLAVVLDLFSREIVGWSVS 252

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 148 RSGKSKTAEAALEQALIARfgslgRVASPFLLRSDNGLVFTSRNYTALVKSYGLQQEFITPYTPEQNGMVERVIRTLKEQ 227
Cdd:NF033516 253 TSMSAELVLDALEMAIEWR-----GKPEGLILHSDNGSQYTSKAYREWLKEHGITQSMSRPGNCWDNAVAESFFGTLKRE 327

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 742942142 228 CAHRQRFETLQHASRVIGDWIQFYNQKRPHQALKMKTPAQAY 269
Cdd:NF033516 328 CLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
transpos_IS481 NF033577
IS481 family transposase; null
 17-269 1.98e-31

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 117.69  E-value: 1.98e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142  17 SVSKLCRWFGLPRRS---WYYRSVKA----------APKLQEHLVTP-----IKNMIEENpSFGYRTVAALL-----GFN 73
Cdd:NF033577  15 SVREAARRFGISRKTvykWLKRYRAGgeeglidrsrRPHRSPRRTSPetearILALRREL-RLGPRRIAYELerqgpGVS 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142  74 KNTVQRIFQ---LKGWQVRKRPVGFRPRIQAlpsvaSAPNQRWATDLCRIWAGRD-GWCSLALVIDCHTRellgWHLSRS 149
Cdd:NF033577  94 RSTVHRILRrhgLSRLRALDRKTGKVKRYER-----AHPGELWHIDIKKLGRIPDvGRLYLHTAIDDHSR----FAYAEL 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 150 GKSKTAEAALE--QALIARFG-SLGRVaspfllRSDNGLVFTSR--NYTALVKSYGLQQEFITPYTPEQNGMVERVIRTL 224
Cdd:NF033577 165 YPDETAETAADflRRAFAEHGiPIRRV------LTDNGSEFRSRahGFELALAELGIEHRRTRPYHPQTNGKVERFHRTL 238

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 742942142 225 KEQCAHRQRFETLQHASRVIGDWIQFYNQKRPHQALKMKTPAQAY 269
Cdd:NF033577 239 KDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAERF 283
PHA02517 PHA02517
putative transposase OrfB; Reviewed
 105-268 1.29e-30

putative transposase OrfB; Reviewed


Pssm-ID: 222853 [Multi-domain]  Cd Length: 277  Bit Score: 115.35  E-value: 1.29e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 105 VASAPNQRWATDLCRIWAGRdGWCSLALVIDCHTRELLGWHLSRSGKSKTAEAALEQALIARfgslgRVASPFLLRSDNG 184
Cdd:PHA02517 105 VATRPNQLWVADFTYVSTWQ-GWVYVAFIIDVFARRIVGWRVSSSMDTDFVLDALEQALWAR-----GRPGGLIHHSDKG 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 185 LVFTSRNYTALVKSYGLQQEFITPYTPEQNGMVERVIRTLKEQCAHRQRFETLQHASRVIGDWIQFYNQKRPHQALKMKT 264
Cdd:PHA02517 179 SQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTP 258


                 ....
gi 742942142 265 PAQA 268
Cdd:PHA02517 259 PAEA 262
rve_3 pfam13683
Integrase core domain;
199-265 2.76e-21

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 84.58  E-value: 2.76e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 742942142  199 YGLQQEFITPYTPEQNGMVERVIRTLKEQCAHRQRFETLQHASRVIGDWIQFYNQKRPHQALKMKTP 265
Cdd:pfam13683   1 LGIEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
rve pfam00665
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ...
 109-211 4.68e-21

Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.


Pssm-ID: 459897 [Multi-domain]  Cd Length: 98  Bit Score: 85.06  E-value: 4.68e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142  109 PNQRWATDLCRIW-AGRDGWCSLALVIDCHTRELLGWHLSRSGKSKTAEAALEQAlIARFGSLGRVaspflLRSDNGLVF 187
Cdd:pfam00665   1 PNQLWQGDFTYIRiPGGGGKLYLLVIVDDFSREILAWALSSEMDAELVLDALERA-IAFRGGVPLI-----IHSDNGSEY 74

                          90       100
                  ....*....|....*....|....
gi 742942142  188 TSRNYTALVKSYGLQQEFITPYTP 211
Cdd:pfam00665  75 TSKAFREFLKDLGIKPSFSRPGNP 98
PRK09409 PRK09409
IS2 transposase TnpB; Reviewed
 51-273 5.67e-14

IS2 transposase TnpB; Reviewed


Pssm-ID: 181829 [Multi-domain]  Cd Length: 301  Bit Score: 70.51  E-value: 5.67e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142  51 IKNMIEENPSFGYRTVAALL----------GFNKNTVQRIFQLKGWQVRKRP-VGFRPRIQALPSVASAPNQRWATDLCR 119
Cdd:PRK09409  56 IHHVIGELPTYGYRRVWALLrrqaeldgmpAINAKRVYRIMRQNALLLERKPaVPPSKRAHTGRVAVKESNQRWCSDGFE 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 120 IWAGRDGWCSLALVIDCHTRELLGWHLSRSG-KSKTAEAALEQALIARFGSlGRVASPFLLRSDNGLVFTSRNYTALVKS 198
Cdd:PRK09409 136 FCCDNGERLRVTFALDCCDREALHWAVTTGGfNSETVQDVMLGAVERRFGN-DLPSSPVEWLTDNGSCYRANETRQFARM 214

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 742942142 199 YGLQQEFITPYTPEQNGMVERVIRTLKEQCAHRQRFETLQHASRVIGDWIQFYNQKRPHQALKMKTPAQAYAEAA 273
Cdd:PRK09409 215 LGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRA 289
PRK14702 PRK14702
insertion element IS2 transposase InsD; Provisional
 51-273 6.42e-14

insertion element IS2 transposase InsD; Provisional


Pssm-ID: 237792 [Multi-domain]  Cd Length: 262  Bit Score: 69.76  E-value: 6.42e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142  51 IKNMIEENPSFGYRTVAALL----------GFNKNTVQRIFQLKGWQVRKRP-VGFRPRIQALPSVASAPNQRWATDLCR 119
Cdd:PRK14702  17 IHHVIGELPTYGYRRVWALLrrqaeldgmpAINAKRVYRLMRQNALLLERKPaVPPSKRAHTGRVAVKESNQRWCSDGFE 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 120 IWAGRDGWCSLALVIDCHTRELLGWHLSRSG-KSKTAEAALEQALIARFGSlGRVASPFLLRSDNGLVFTSRNYTALVKS 198
Cdd:PRK14702  97 FCCDNGERLRVTFALDCCDREALHWAVTTGGfNSETVQDVMLGAVERRFGN-DLPSSPVEWLTDNGSCYRANETRQFARM 175

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 742942142 199 YGLQQEFITPYTPEQNGMVERVIRTLKEQCAHRQRFETLQHASRVIGDWIQFYNQKRPHQALKMKTPAQAYAEAA 273
Cdd:PRK14702 176 LGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRA 250
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
151-271 6.74e-13

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 67.60  E-value: 6.74e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 151 KSKTAEAAlEQALIARFGSLGRvaspFLLRS---DNGLVFTsrNYTALVKSYGLQQEFITPYTPEQNGMVERVIRTLKEQ 227
Cdd:COG2826  206 PDKTAESV-ADALIRLLRKLPA----FLRKSittDNGKEFA--DHKEIEAALGIKVYFADPYSPWQRGTNENTNGLLRQY 278

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 742942142 228 CAHRQRFETLQHAsrVIGDWIQFYNQkRPHQALKMKTPAQAYAE 271
Cdd:COG2826  279 FPKGTDFSTVTQE--ELDAIADRLNN-RPRKCLGYKTPAEVFAE 319
transpos_IS21 NF033546
IS21 family transposase;
152-271 1.10e-05

IS21 family transposase;


Pssm-ID: 468077 [Multi-domain]  Cd Length: 296  Bit Score: 45.66  E-value: 1.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742942142 152 SKTAEAaLEQALIARFGSLGRVasPFLLRSDN------------GLVFTSRnYTALVKSYGLQQEFITPYTPEQNGMVER 219
Cdd:NF033546 158 SESQED-LLDGHQRAFEFFGGV--PREIVYDNlktavdkrdryeEPRLNPR-FAAFAAHYGFEPRPCRPYRPQEKGKVER 233

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 742942142 220 VIRTLKEQC--AHRQRFETLQHASRVIGDWIQFYNQKRPHQALKmKTPAQAYAE 271
Cdd:NF033546 234 AVGYVRRWFlrLRGRRFESLAELNAALAEWLAELANQRPHGTTG-GSPAERFEE 286
rve_2 pfam13333
Integrase core domain;
223-267 5.76e-05

Integrase core domain;


Pssm-ID: 372570 [Multi-domain]  Cd Length: 52  Bit Score: 39.94  E-value: 5.76e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 742942142  223 TLKEQCAHRQRFETLQHASRVIGDWIQFYNQKRphqaLKMKTPAQ 267
Cdd:pfam13333   6 SLKTEMVYGEHFKTLEELELAIFDYIEWYNNKR----LKGLSPVQ 46
transpos_IS630 NF033545
IS630 family transposase;
205-249 6.09e-04

IS630 family transposase;


Pssm-ID: 468076 [Multi-domain]  Cd Length: 298  Bit Score: 40.70  E-value: 6.09e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 742942142 205 FITPYTPEQNgMVERVIRTLKEQCAHRQRFETLQHASRVIGDWIQ 249
Cdd:NF033545 254 YLPPYSPWLN-PIERVWAVLKRRLLRNRAFRSVDELREAIDAFLN 297
Rve COG3316
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];
214-268 1.36e-03

Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];


Pssm-ID: 442545 [Multi-domain]  Cd Length: 235  Bit Score: 39.12  E-value: 1.36e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 742942142 214 NGMVERVIRTLKEQCAHRQRFETLQHASRVIGDWIQFYNQKRPHQALKMKTPAQA 268
Cdd:COG3316  163 NNRIERDHRTLKRRERPMRGFKSFRTAQRFLSGFEAYYNFRRPHRSLNGATPARV 217
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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