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Conserved domains on  [gi|753813552|ref|WP_041569185|]
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MULTISPECIES: 30S ribosomal protein S16 [Chloracidobacterium]

Protein Classification

30S ribosomal protein S16( domain architecture ID 10000742)

30S ribosomal protein S16 is a ribosomal protein that may have a cation-dependent endonuclease activity

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-73 4.58e-42

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 439998  Cd Length: 76  Bit Score: 131.71  E-value: 4.58e-42
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 753813552  1 MLSIRLTRRGTHRRPFYRIVVAEKRSKRDGGFIEALGYRDPLTDPEKLVINLERVDYWLKCGAQPSDTVRALI 73
Cdd:COG0228   1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPARIKLDEERAQYWLSKGAQPTDTVAKLL 73
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-73 4.58e-42

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 131.71  E-value: 4.58e-42
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 753813552  1 MLSIRLTRRGTHRRPFYRIVVAEKRSKRDGGFIEALGYRDPLTDPEKLVINLERVDYWLKCGAQPSDTVRALI 73
Cdd:COG0228   1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPARIKLDEERAQYWLSKGAQPTDTVAKLL 73
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-73 3.42e-32

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 106.94  E-value: 3.42e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 753813552   2 LSIRLTRRGTHRRPFYRIVVAEKRSKRDGGFIEALGYRDPLTDPEKLVINLERVDYWLKCGAQPSDTVRALI 73
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEDLVKLNVERIKHWLSKGAQPTDTVRKLL 72
rpsP PRK14521
30S ribosomal protein S16; Provisional
 4-73 4.12e-28

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 99.85  E-value: 4.12e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753813552   4 IRLTRRGTHRRPFYRIVVAEKRSKRDGGFIEALGYRDPLTDPEKLVINLERVDYWLKCGAQPSDTVRALI 73
Cdd:PRK14521   5 IRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPNTNPATVDLNFDRAVYWLMNGAQPTDTARNIL 74
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-66 2.55e-27

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 93.98  E-value: 2.55e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 753813552   8 RRGTHRRPFYRIVVAEKRSKRDGGFIEALGYRDPLTDP--EKLVINLERVDYWLKCGAQPS 66
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPgePRVKLDEERIKYWLGVGAQPT 61
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-73 4.58e-42

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 131.71  E-value: 4.58e-42
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 753813552  1 MLSIRLTRRGTHRRPFYRIVVAEKRSKRDGGFIEALGYRDPLTDPEKLVINLERVDYWLKCGAQPSDTVRALI 73
Cdd:COG0228   1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPARIKLDEERAQYWLSKGAQPTDTVAKLL 73
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-73 3.42e-32

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 106.94  E-value: 3.42e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 753813552   2 LSIRLTRRGTHRRPFYRIVVAEKRSKRDGGFIEALGYRDPLTDPEKLVINLERVDYWLKCGAQPSDTVRALI 73
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEDLVKLNVERIKHWLSKGAQPTDTVRKLL 72
rpsP PRK14521
30S ribosomal protein S16; Provisional
 4-73 4.12e-28

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 99.85  E-value: 4.12e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753813552   4 IRLTRRGTHRRPFYRIVVAEKRSKRDGGFIEALGYRDPLTDPEKLVINLERVDYWLKCGAQPSDTVRALI 73
Cdd:PRK14521   5 IRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPNTNPATVDLNFDRAVYWLMNGAQPTDTARNIL 74
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-66 2.55e-27

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 93.98  E-value: 2.55e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 753813552   8 RRGTHRRPFYRIVVAEKRSKRDGGFIEALGYRDPLTDP--EKLVINLERVDYWLKCGAQPS 66
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPgePRVKLDEERIKYWLGVGAQPT 61
rpsP PRK14520
30S ribosomal protein S16; Provisional
 4-73 3.76e-24

30S ribosomal protein S16; Provisional


Pssm-ID: 184724 [Multi-domain]  Cd Length: 155  Bit Score: 88.98  E-value: 3.76e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753813552   4 IRLTRRGTHRRPFYRIVVAEKRSKRDGGFIEALGYRDPLTDPEKLVINLERVDYWLKCGAQPSDTVRALI 73
Cdd:PRK14520   5 IKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHPKEEPSLIEIDSERAQYWLSVGAQPTEPVLALL 74
rps16 CHL00005
ribosomal protein S16
 1-72 1.13e-18

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 72.75  E-value: 1.13e-18
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 753813552  1 MLSIRLTRRGTHRRPFYRIVVAEKRSKRDGGFIEALGYRDPLTDpeKLVINLERVDYWLKCGAQPSDTVRAL 72
Cdd:CHL00005  1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKN--QTYLNVPAILYFLEKGAQPTETVYDI 70
rpsP PRK14522
30S ribosomal protein S16; Provisional
 2-73 3.26e-09

30S ribosomal protein S16; Provisional


Pssm-ID: 172988 [Multi-domain]  Cd Length: 116  Bit Score: 49.61  E-value: 3.26e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 753813552   2 LSIRLTRRGTHRRPFYRIVVAEKRSKRDGGFIEALGYRDPLTDpEKLVINLERVDYWLKCGAQPSDTVRALI 73
Cdd:PRK14522   3 LKIRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDPHSE-QNYQLKSERIFYWLNQGAELTEKAGALV 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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