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Conserved domains on  [gi|754782906|ref|WP_042146722|]
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5-oxoprolinase subunit PxpB [Paucisalibacillus sp. EB02]

Protein Classification

allophanate hydrolase subunit 1( domain architecture ID 10005226)

allophanate hydrolase subunit 1 (AHS1) converts allophanate to ammonium and carbon dioxide, and is essential for utilization of urea as a nitrogen source in bacteria

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-223 1.20e-105

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


:

Pssm-ID: 441652  Cd Length: 229  Bit Score: 303.98  E-value: 1.20e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906   1 MRYTVKTAGDQSIIINFGEQINEQTSQTVQKLSNIIESNGIIGVEEVVLGYTTLLINYVPTKISYDTLLSTIKVLLKDIA 80
Cdd:COG2049    3 MAMRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAARLRALLAELD 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906  81 LTKMEERNTIEIPVLYGNEMGPDLVDVAKLNHLAVEEVIKLHTEPDYSVYFLGFSPGFPFLGGLNEKIATPRLENPRKKV 160
Cdd:COG2049   83 AAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRV 162
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754782906 161 QAGSVGIANYQTGIYPVTSPGGWRIIGHTPIPLFNSNDADPFLLSPGDIIKFKSITKKEYDEI 223
Cdd:COG2049  163 PAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPISEEEFDAL 225
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-223 1.20e-105

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 303.98  E-value: 1.20e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906   1 MRYTVKTAGDQSIIINFGEQINEQTSQTVQKLSNIIESNGIIGVEEVVLGYTTLLINYVPTKISYDTLLSTIKVLLKDIA 80
Cdd:COG2049    3 MAMRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAARLRALLAELD 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906  81 LTKMEERNTIEIPVLYGNEMGPDLVDVAKLNHLAVEEVIKLHTEPDYSVYFLGFSPGFPFLGGLNEKIATPRLENPRKKV 160
Cdd:COG2049   83 AAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRV 162
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754782906 161 QAGSVGIANYQTGIYPVTSPGGWRIIGHTPIPLFNSNDADPFLLSPGDIIKFKSITKKEYDEI 223
Cdd:COG2049  163 PAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPISEEEFDAL 225
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
4-204 4.36e-93

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 271.35  E-value: 4.36e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906    4 TVKTAGDQSIIINFGEQINEQTSQTVQKLSNIIESNGIIGVEEVVLGYTTLLINYVPTKISYDTLLSTIKVLLKDIALTK 83
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAPLPGVVEVVPGYRSLLVHYDPLVTDLAALEARLRALLAALEAAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906   84 MEERNTIEIPVLYGNEMGPDLVDVAKLNHLAVEEVIKLHTEPDYSVYFLGFSPGFPFLGGLNEKIATPRLENPRKKVQAG 163
Cdd:pfam02682  81 APGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVPAG 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 754782906  164 SVGIANYQTGIYPVTSPGGWRIIGHTPIPLFNSNDADPFLL 204
Cdd:pfam02682 161 SVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPALL 201
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
4-202 2.16e-88

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 259.38  E-value: 2.16e-88
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906     4 TVKTAGDQSIIINFGEQINEQTSQTVQKLSNIIESNGIIGVEEVVLGYTTLLINYVPTKISYDTLLSTIKVLLKDIALTK 83
Cdd:smart00796   2 RIRPAGDRALLVEFGDEIDLALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDPLVIDPAALLARLRALEALPLAEA 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906    84 ME-ERNTIEIPVLYGNEMGPDLVDVAKLNHLAVEEVIKLHTEPDYSVYFLGFSPGFPFLGGLNEKIATPRLENPRKKVQA 162
Cdd:smart00796  82 LEvPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVPA 161
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 754782906   163 GSVGIANYQTGIYPVTSPGGWRIIGHTPIPLFNSNDADPF 202
Cdd:smart00796 162 GSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
9-212 6.39e-65

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 199.69  E-value: 6.39e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906    9 GDQSIIINFGEQINEQTSQTVQKLSNIIESNGiiGVEEVVLGYTTLLINYVPTKIsYDTLLSTIKVLLKDIALTKMEERN 88
Cdd:TIGR00370   2 GESAVVIRLGPPINEQVQGIVWAAAAYLEEQP--GFVECIPGMNNLTVFYDMYEV-YKHLPQRLSSPWEEVKDYEVNRRI 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906   89 tIEIPVLYGNEMGPDLVDVAKLNHLAVEEVIKLHTEPDYSVYFLGFSPGFPFLGGLNEKIATPRLENPRKKVQAGSVGIA 168
Cdd:TIGR00370  79 -IEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVGIG 157
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 754782906  169 NYQTGIYPVTSPGGWRIIGHTPIPLFNSNDADPFLLSPGDIIKF 212
Cdd:TIGR00370 158 GLQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKF 201
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-223 1.20e-105

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 303.98  E-value: 1.20e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906   1 MRYTVKTAGDQSIIINFGEQINEQTSQTVQKLSNIIESNGIIGVEEVVLGYTTLLINYVPTKISYDTLLSTIKVLLKDIA 80
Cdd:COG2049    3 MAMRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAARLRALLAELD 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906  81 LTKMEERNTIEIPVLYGNEMGPDLVDVAKLNHLAVEEVIKLHTEPDYSVYFLGFSPGFPFLGGLNEKIATPRLENPRKKV 160
Cdd:COG2049   83 AAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRV 162
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 754782906 161 QAGSVGIANYQTGIYPVTSPGGWRIIGHTPIPLFNSNDADPFLLSPGDIIKFKSITKKEYDEI 223
Cdd:COG2049  163 PAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPISEEEFDAL 225
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
4-204 4.36e-93

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 271.35  E-value: 4.36e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906    4 TVKTAGDQSIIINFGEQINEQTSQTVQKLSNIIESNGIIGVEEVVLGYTTLLINYVPTKISYDTLLSTIKVLLKDIALTK 83
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAPLPGVVEVVPGYRSLLVHYDPLVTDLAALEARLRALLAALEAAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906   84 MEERNTIEIPVLYGNEMGPDLVDVAKLNHLAVEEVIKLHTEPDYSVYFLGFSPGFPFLGGLNEKIATPRLENPRKKVQAG 163
Cdd:pfam02682  81 APGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVPAG 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 754782906  164 SVGIANYQTGIYPVTSPGGWRIIGHTPIPLFNSNDADPFLL 204
Cdd:pfam02682 161 SVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPALL 201
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
4-202 2.16e-88

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 259.38  E-value: 2.16e-88
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906     4 TVKTAGDQSIIINFGEQINEQTSQTVQKLSNIIESNGIIGVEEVVLGYTTLLINYVPTKISYDTLLSTIKVLLKDIALTK 83
Cdd:smart00796   2 RIRPAGDRALLVEFGDEIDLALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDPLVIDPAALLARLRALEALPLAEA 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906    84 ME-ERNTIEIPVLYGNEMGPDLVDVAKLNHLAVEEVIKLHTEPDYSVYFLGFSPGFPFLGGLNEKIATPRLENPRKKVQA 162
Cdd:smart00796  82 LEvPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVPA 161
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 754782906   163 GSVGIANYQTGIYPVTSPGGWRIIGHTPIPLFNSNDADPF 202
Cdd:smart00796 162 GSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
9-212 6.39e-65

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 199.69  E-value: 6.39e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906    9 GDQSIIINFGEQINEQTSQTVQKLSNIIESNGiiGVEEVVLGYTTLLINYVPTKIsYDTLLSTIKVLLKDIALTKMEERN 88
Cdd:TIGR00370   2 GESAVVIRLGPPINEQVQGIVWAAAAYLEEQP--GFVECIPGMNNLTVFYDMYEV-YKHLPQRLSSPWEEVKDYEVNRRI 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754782906   89 tIEIPVLYGNEMGPDLVDVAKLNHLAVEEVIKLHTEPDYSVYFLGFSPGFPFLGGLNEKIATPRLENPRKKVQAGSVGIA 168
Cdd:TIGR00370  79 -IEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVGIG 157
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 754782906  169 NYQTGIYPVTSPGGWRIIGHTPIPLFNSNDADPFLLSPGDIIKF 212
Cdd:TIGR00370 158 GLQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKF 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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