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Conserved domains on  [gi|918397082|ref|WP_052449357|]
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MULTISPECIES: DNA-packaging protein FI [Aeromonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Packaging_FI super family cl16526
DNA packaging protein FI; This family includes the lambda phage DNA-packaging protein FI. ...
 3-98 9.61e-08

DNA packaging protein FI; This family includes the lambda phage DNA-packaging protein FI. Proteins in this family are typically between 124 and 140 amino acids in length. There is a conserved EEE sequence motif.


The actual alignment was detected with superfamily member pfam14000:

Pssm-ID: 290707  Cd Length: 131  Bit Score: 47.38  E-value: 9.61e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918397082    3 EKEQLIARVAELSAKLGRETDPSGTVLELKARIEELEAELEDN---------ASTLNEGHSNLAQPFNE----LATKAGS 69
Cdd:pfam14000   1 TKEELIARLRELGTQLNRDVSVSGTAAELSQRVAELEEELDDTdetagqdtpLSRENTEHLPAVESADSdesiVPPGIGQ 80

                          90       100
                  ....*....|....*....|....*....
gi 918397082   70 VQRMVCIIPKVTLHLrlgnEPLLAVKDKP 98
Cdd:pfam14000  81 RSERVLVRALRTLHI----CALHATRNEP 105
 
Name Accession Description Interval E-value
Packaging_FI pfam14000
DNA packaging protein FI; This family includes the lambda phage DNA-packaging protein FI. ...
 3-98 9.61e-08

DNA packaging protein FI; This family includes the lambda phage DNA-packaging protein FI. Proteins in this family are typically between 124 and 140 amino acids in length. There is a conserved EEE sequence motif.


Pssm-ID: 290707  Cd Length: 131  Bit Score: 47.38  E-value: 9.61e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918397082    3 EKEQLIARVAELSAKLGRETDPSGTVLELKARIEELEAELEDN---------ASTLNEGHSNLAQPFNE----LATKAGS 69
Cdd:pfam14000   1 TKEELIARLRELGTQLNRDVSVSGTAAELSQRVAELEEELDDTdetagqdtpLSRENTEHLPAVESADSdesiVPPGIGQ 80

                          90       100
                  ....*....|....*....|....*....
gi 918397082   70 VQRMVCIIPKVTLHLrlgnEPLLAVKDKP 98
Cdd:pfam14000  81 RSERVLVRALRTLHI----CALHATRNEP 105
 
Name Accession Description Interval E-value
Packaging_FI pfam14000
DNA packaging protein FI; This family includes the lambda phage DNA-packaging protein FI. ...
 3-98 9.61e-08

DNA packaging protein FI; This family includes the lambda phage DNA-packaging protein FI. Proteins in this family are typically between 124 and 140 amino acids in length. There is a conserved EEE sequence motif.


Pssm-ID: 290707  Cd Length: 131  Bit Score: 47.38  E-value: 9.61e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918397082    3 EKEQLIARVAELSAKLGRETDPSGTVLELKARIEELEAELEDN---------ASTLNEGHSNLAQPFNE----LATKAGS 69
Cdd:pfam14000   1 TKEELIARLRELGTQLNRDVSVSGTAAELSQRVAELEEELDDTdetagqdtpLSRENTEHLPAVESADSdesiVPPGIGQ 80

                          90       100
                  ....*....|....*....|....*....
gi 918397082   70 VQRMVCIIPKVTLHLrlgnEPLLAVKDKP 98
Cdd:pfam14000  81 RSERVLVRALRTLHI----CALHATRNEP 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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