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Conserved domains on  [gi|937115747|ref|WP_054553406|]
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MULTISPECIES: tetratricopeptide repeat protein [Pseudoalteromonas]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11469168)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  30708253|10517866
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
191-276 4.17e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 64.17  E-value: 4.17e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 191 FDEILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSPNLR 270
Cdd:COG4785   96 FDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175


                 ....*.
gi 937115747 271 NELLHE 276
Cdd:COG4785  176 ERALWL 181
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
191-276 4.17e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 64.17  E-value: 4.17e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 191 FDEILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSPNLR 270
Cdd:COG4785   96 FDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175


                 ....*.
gi 937115747 271 NELLHE 276
Cdd:COG4785  176 ERALWL 181
TPR_11 pfam13414
TPR repeat;
209-249 4.37e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 34.37  E-value: 4.37e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 937115747  209 ADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALL 249
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
191-276 4.17e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 64.17  E-value: 4.17e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 191 FDEILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSPNLR 270
Cdd:COG4785   96 FDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175


                 ....*.
gi 937115747 271 NELLHE 276
Cdd:COG4785  176 ERALWL 181
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 188-269 1.25e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.93  E-value: 1.25e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 188 IEIFDEILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSP 267
Cdd:COG3914   98 LALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP 177


                 ..
gi 937115747 268 NL 269
Cdd:COG3914  178 DN 179
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
188-268 1.41e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.41  E-value: 1.41e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 188 IEIFDEILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSP 267
Cdd:COG0457   62 LADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141


                 .
gi 937115747 268 N 268
Cdd:COG0457  142 D 142
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 188-268 4.16e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.39  E-value: 4.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 188 IEIFDEILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSP 267
Cdd:COG3914  132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211


                 .
gi 937115747 268 N 268
Cdd:COG3914  212 D 212
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 188-268 5.07e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.55  E-value: 5.07e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 188 IEIFDEILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSP 267
Cdd:COG4235   37 LAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116


                 .
gi 937115747 268 N 268
Cdd:COG4235  117 A 117
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
188-268 1.32e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 57.32  E-value: 1.32e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 188 IEIFDEILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSP 267
Cdd:COG0457   28 IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDP 107


                 .
gi 937115747 268 N 268
Cdd:COG0457  108 D 108
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 188-268 3.27e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.43  E-value: 3.27e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 188 IEIFDEILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSP 267
Cdd:COG4783   24 EALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDP 103


                 .
gi 937115747 268 N 268
Cdd:COG4783  104 E 104
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
188-292 1.12e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.63  E-value: 1.12e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 188 IEIFDEILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSP 267
Cdd:COG0457   96 LEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAAL 175

                         90       100
                 ....*....|....*....|....*
gi 937115747 268 NLRNELLHESAFASLHDNDSFNSLL 292
Cdd:COG0457  176 AALLAAALGEAALALAAAEVLLALL 200
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
195-268 1.41e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.24  E-value: 1.41e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937115747 195 LKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSPN 268
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD 74
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
188-270 6.85e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.40  E-value: 6.85e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 188 IEIFDEILKRKPEDVEAIAYKADALLEINETGEAIELcNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSP 267
Cdd:COG3063   12 EEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90


                 ...
gi 937115747 268 NLR 270
Cdd:COG3063   91 SAL 93
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 188-268 1.40e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.81  E-value: 1.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 188 IEIFDEILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSP 267
Cdd:COG4783   58 IVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137


                 .
gi 937115747 268 N 268
Cdd:COG4783  138 D 138
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 147-294 3.48e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.50  E-value: 3.48e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 147 LEEKLRERSEEILLNQQKISITNEvHSLWMRANL---ESDVANKIEIFDEILKRKPEDVEAIAYKADALLEINETGEAIE 223
Cdd:COG2956   87 LKAGLLDRAEELLEKLLELDPDDA-EALRLLAEIyeqEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIE 165

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 937115747 224 LCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSPNLRNELLH-ESAFASLHDNDSFNSLLNE 294
Cdd:COG2956  166 ALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRlAELYEKLGDPEEALELLRK 237
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 137-294 1.66e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 1.66e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 137 TKEYEERLKVLEEKLRerseeilLNQQKISITNEVHSLWMRANlesDVANKIEIFDEILKRKPEDVEAIAYKADALLEIN 216
Cdd:COG2956  123 EGDWEKAIEVLERLLK-------LGPENAHAYCELAELYLEQG---DYDEAIEALEKALKLDPDCARALLLLAELYLEQG 192

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 937115747 217 ETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSPNLRNELLHESAFASLHDNDSFNSLLNE 294
Cdd:COG2956  193 DYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLER 270
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 188-268 2.15e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.15  E-value: 2.15e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 188 IEIFDEILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSP 267
Cdd:COG4235    3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82


                 .
gi 937115747 268 N 268
Cdd:COG4235   83 D 83
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 193-269 3.69e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.07  E-value: 3.69e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937115747 193 EILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSPNL 269
Cdd:COG3914   69 AAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDF 145
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 135-267 4.84e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 4.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 135 AITKEYEERLKVLEEKLRERSEEILLNQQKISITNEVHSLWMRANLESDVANKIEIFDEILKRKPEDVEAIAYKADALLE 214
Cdd:COG5010   21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 937115747 215 INETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSP 267
Cdd:COG5010  101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 188-286 1.07e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 43.44  E-value: 1.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 188 IEIFDEILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYwqracaYALLH--KHADAMADIRMALEY 265
Cdd:COG3914  166 IAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH------SNLLFalRQACDWEVYDRFEEL 239

                         90       100
                 ....*....|....*....|.
gi 937115747 266 SPNLRNELLHESAFASLHDND 286
Cdd:COG3914  240 LAALARGPSELSPFALLYLPD 260
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
197-268 2.38e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.44  E-value: 2.38e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 937115747 197 RKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSPN 268
Cdd:COG4785   68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 188-268 4.58e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.87  E-value: 4.58e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 188 IEIFDEILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSP 267
Cdd:COG2956   28 IDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDP 107


                 .
gi 937115747 268 N 268
Cdd:COG2956  108 D 108
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 200-268 5.76e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.40  E-value: 5.76e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937115747 200 EDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMADIRMALEYSPN 268
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD 70
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
211-268 1.01e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 1.01e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 937115747 211 ALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAMAdIRMALEYSPN 268
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPN 57
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 177-268 1.17e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 1.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937115747 177 RANLESDVANKIEIFDEILKRKPEDVEAIAYKADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALLHKHADAM 256
Cdd:COG5010   29 AALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAK 108

                         90
                 ....*....|..
gi 937115747 257 ADIRMALEYSPN 268
Cdd:COG5010  109 EYYEKALALSPD 120
TPR_11 pfam13414
TPR repeat;
209-249 4.37e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 34.37  E-value: 4.37e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 937115747  209 ADALLEINETGEAIELCNQALEIDSDYGYAYWQRACAYALL 249
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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