|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
3-320 |
0e+00 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 542.38 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 3 FFKRLKESISNKAEAVTNKFKEGLTKTRDAFVDRVDDLFSRrKKIDEDFYEELEEILIGADVGVNTVLKLIDQLRAEVKK 82
Cdd:PRK10416 1 FFSWLKKKKKEKKEGWFERLKKGLSKTRENFGEGINGLFAK-KKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 83 RKIEDPAELQPILSEKLIELLKGDADAgLKLNPNGLSVILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAI 162
Cdd:PRK10416 80 KNLKDPEELKELLKEELAEILEPVEKP-LNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAI 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 163 EQLETWGERVGVDVIKQHSGSDPAAVMFDAVQAAKTRGVDILLCDTAGRLQNKVNLMEELNKIYRVIQREVPDAPHEVIL 242
Cdd:PRK10416 159 EQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLL 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 950265447 243 VLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAKGGIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHALFGK 320
Cdd:PRK10416 239 VLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGG 316
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
20-319 |
0e+00 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 536.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 20 NKFKEGLTKTRDAFVDRVDDLFSRRKKIDEDFYEELEEILIGADVGVNTVLKLIDQLRAEVKKRKIEDPAELQPILSEKL 99
Cdd:COG0552 3 ERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 100 IELLKGDaDAGLKLNPNGLSVILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQ 179
Cdd:COG0552 83 LEILDPV-DKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIAQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 180 HSGSDPAAVMFDAVQAAKTRGVDILLCDTAGRLQNKVNLMEELNKIYRVIQREVPDAPHEVILVLDATTGQNALSQAKLF 259
Cdd:COG0552 162 KEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAKVF 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 260 GDKTGLTGLVLSKLDGTAKGGIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHALFG 319
Cdd:COG0552 242 NEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
46-318 |
3.96e-143 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 405.10 E-value: 3.96e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 46 KIDEDFYEELEEILIGADVGVNTVLKLIDQLRAEVKKRKIEDPAELQPILSEKLIELLKGDADAGLKLN----PNGLSVI 121
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLEliveENKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 122 LFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMFDAVQAAKTRGV 201
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 202 DILLCDTAGRLQNKVNLMEELNKIYRVIQREVPDAPHEVILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAKGGI 281
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 950265447 282 VVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHALF 318
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
120-317 |
9.38e-121 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 345.32 E-value: 9.38e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 120 VILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMFDAVQAAKTR 199
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 200 GVDILLCDTAGRLQNKVNLMEELNKIYRVIQREVPDAPHEVILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAKG 279
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 950265447 280 GIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHAL 317
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
120-319 |
3.09e-106 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 308.57 E-value: 3.09e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 120 VILFVGVNGVGKTTTIGKMAHMFKSQG-KKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMFDAVQAAKT 198
Cdd:smart00962 3 VILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAKA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 199 RGVDILLCDTAGRLQNKVNLMEELNKIYRVIQrevpdaPHEVILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAK 278
Cdd:smart00962 83 RGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAK 156
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 950265447 279 GGIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHALFG 319
Cdd:smart00962 157 GGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
119-317 |
1.52e-105 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 306.78 E-value: 1.52e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 119 SVILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMFDAVQAAKT 198
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 199 RGVDILLCDTAGRLQNKVNLMEELNKIYRVIqrevpdAPHEVILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAK 278
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 950265447 279 GGIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHAL 317
Cdd:pfam00448 155 GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
3-320 |
0e+00 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 542.38 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 3 FFKRLKESISNKAEAVTNKFKEGLTKTRDAFVDRVDDLFSRrKKIDEDFYEELEEILIGADVGVNTVLKLIDQLRAEVKK 82
Cdd:PRK10416 1 FFSWLKKKKKEKKEGWFERLKKGLSKTRENFGEGINGLFAK-KKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 83 RKIEDPAELQPILSEKLIELLKGDADAgLKLNPNGLSVILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAI 162
Cdd:PRK10416 80 KNLKDPEELKELLKEELAEILEPVEKP-LNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAI 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 163 EQLETWGERVGVDVIKQHSGSDPAAVMFDAVQAAKTRGVDILLCDTAGRLQNKVNLMEELNKIYRVIQREVPDAPHEVIL 242
Cdd:PRK10416 159 EQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLL 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 950265447 243 VLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAKGGIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHALFGK 320
Cdd:PRK10416 239 VLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGG 316
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
20-319 |
0e+00 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 536.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 20 NKFKEGLTKTRDAFVDRVDDLFSRRKKIDEDFYEELEEILIGADVGVNTVLKLIDQLRAEVKKRKIEDPAELQPILSEKL 99
Cdd:COG0552 3 ERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 100 IELLKGDaDAGLKLNPNGLSVILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQ 179
Cdd:COG0552 83 LEILDPV-DKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIAQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 180 HSGSDPAAVMFDAVQAAKTRGVDILLCDTAGRLQNKVNLMEELNKIYRVIQREVPDAPHEVILVLDATTGQNALSQAKLF 259
Cdd:COG0552 162 KEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAKVF 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 260 GDKTGLTGLVLSKLDGTAKGGIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHALFG 319
Cdd:COG0552 242 NEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
46-318 |
3.96e-143 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 405.10 E-value: 3.96e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 46 KIDEDFYEELEEILIGADVGVNTVLKLIDQLRAEVKKRKIEDPAELQPILSEKLIELLKGDADAGLKLN----PNGLSVI 121
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLEliveENKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 122 LFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMFDAVQAAKTRGV 201
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 202 DILLCDTAGRLQNKVNLMEELNKIYRVIQREVPDAPHEVILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAKGGI 281
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 950265447 282 VVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHALF 318
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
120-317 |
9.38e-121 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 345.32 E-value: 9.38e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 120 VILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMFDAVQAAKTR 199
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 200 GVDILLCDTAGRLQNKVNLMEELNKIYRVIQREVPDAPHEVILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAKG 279
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 950265447 280 GIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHAL 317
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
120-319 |
3.09e-106 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 308.57 E-value: 3.09e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 120 VILFVGVNGVGKTTTIGKMAHMFKSQG-KKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMFDAVQAAKT 198
Cdd:smart00962 3 VILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAKA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 199 RGVDILLCDTAGRLQNKVNLMEELNKIYRVIQrevpdaPHEVILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAK 278
Cdd:smart00962 83 RGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAK 156
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 950265447 279 GGIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHALFG 319
Cdd:smart00962 157 GGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
119-317 |
1.52e-105 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 306.78 E-value: 1.52e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 119 SVILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMFDAVQAAKT 198
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 199 RGVDILLCDTAGRLQNKVNLMEELNKIYRVIqrevpdAPHEVILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAK 278
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 950265447 279 GGIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHAL 317
Cdd:pfam00448 155 GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
2-319 |
5.10e-90 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 272.62 E-value: 5.10e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 2 SFFKRLKESISNKAEAVTNKFKEGLTKTRDAFVDRVDDLFSRRK--KIDE----DFYEELEEILIGADVGVNTVLKLIDQ 75
Cdd:PRK14974 11 KFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKitEIKEkdieDLLEELELELLESDVALEVAEEILES 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 76 LRAEVKKRKI---EDPAE---------LQPILS-EKLIELLKGDADAGLKLnpnglsVILFVGVNGVGKTTTIGKMAHMF 142
Cdd:PRK14974 91 LKEKLVGKKVkrgEDVEEivknalkeaLLEVLSvGDLFDLIEEIKSKGKPV------VIVFVGVNGTGKTTTIAKLAYYL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 143 KSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMFDAVQAAKTRGVDILLCDTAGRLQNKVNLMEEL 222
Cdd:PRK14974 165 KKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDEL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 223 NKIYRVIQrevpdaPHEVILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAKGGIVVAIRQELSLPVKFVGLGEKM 302
Cdd:PRK14974 245 KKIVRVTK------PDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGY 318
|
330
....*....|....*..
gi 950265447 303 DDLQPFDSEQFVHALFG 319
Cdd:PRK14974 319 DDLIPFDPDWFVDKLLG 335
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
35-314 |
4.94e-85 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 262.65 E-value: 4.94e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 35 DRVDDLFSR---RKKIDEDFYEE-LEEI---LIGADVGVNTVLKLIDQLRAEVKKRKIedPAELQP------ILSEKLIE 101
Cdd:COG0541 7 ERLQGAFKKlrgKGRLTEENIKEaLREVrraLLEADVNLKVVKDFIERVKERALGEEV--LKSLTPgqqvikIVHDELVE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 102 LLkGDADAGLKLNPNGLSVILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHS 181
Cdd:COG0541 85 LL-GGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEED 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 182 GSDPAAVMFDAVQAAKTRGVDILLCDTAGRLQNKVNLMEELNKIYRVIQrevpdaPHEVILVLDATTGQNALSQAKLFGD 261
Cdd:COG0541 164 GKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVN------PDETLLVVDAMTGQDAVNVAKAFNE 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 950265447 262 KTGLTGLVLSKLDGTAKGGIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFV 314
Cdd:COG0541 238 ALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMA 290
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
120-317 |
1.27e-84 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 253.45 E-value: 1.27e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 120 VILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMFDAVQAAKTR 199
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 200 GVDILLCDTAGRLQNKVNLMEELNKIYRVIQrevpdaPHEVILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAKG 279
Cdd:cd03115 82 GYDVLLVDTAGRLQKDEPLMEELKKVKEVES------PDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 950265447 280 GIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHAL 317
Cdd:cd03115 156 GAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
119-311 |
2.72e-70 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 217.08 E-value: 2.72e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 119 SVILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMFDAVQAAKT 198
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 199 RGVDILLCDTAGRLQNKVNLMEELNKIYRVIQrevpdaPHEVILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAK 278
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDAR 154
|
170 180 190
....*....|....*....|....*....|...
gi 950265447 279 GGIVVAIRQELSLPVKFVGLGEKMDDLQPFDSE 311
Cdd:cd18539 155 GGAALSIRHVTGKPIKFIGVGEKIEDLEPFHPD 187
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
41-319 |
2.80e-69 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 222.39 E-value: 2.80e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 41 FSRRKKIDE----DFYEELEEILIGADVGVNTVLKLIDqlraEVKKRKIED--PAELQP------ILSEKLIELLKGDAD 108
Cdd:PRK00771 12 LAGKSRIDEktvkEVVKDIQRALLQADVNVKLVKELSK----SIKERALEEepPKGLTPrehvikIVYEELVKLLGEETE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 109 A-GLKLNPnglSVILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAA 187
Cdd:PRK00771 88 PlVLPLKP---QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 188 VMFDAVQAAKTRgvDILLCDTAGRLQNKVNLMEELNKIYRVIQrevpdaPHEVILVLDATTGQNALSQAKLFGDKTGLTG 267
Cdd:PRK00771 165 IAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVK------PDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 950265447 268 LVLSKLDGTAKGGIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHALFG 319
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG 288
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
119-314 |
2.57e-58 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 186.24 E-value: 2.57e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 119 SVILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMFDAVQAAKT 198
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 199 RGVDILLCDTAGRLQNKVNLMEELNKIYRVIQrevpdaPHEVILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAK 278
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVK------PDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAK 154
|
170 180 190
....*....|....*....|....*....|....*.
gi 950265447 279 GGIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFV 314
Cdd:cd17875 155 GGGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRFV 190
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
120-317 |
2.36e-49 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 163.55 E-value: 2.36e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 120 VILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMFDAVQAAKTR 199
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 200 GVDILLCDTAGRLQNKVNLMEELNKIYRVIQrevPDApheVILVLDATTGQNALSQAKLF----------GDKTGLTGLV 269
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENN---PDL---VLFVGEALVGNDAVDQLKKFnqaladyspsDNPRLIDGIV 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 950265447 270 LSKLDGTA-KGGIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHAL 317
Cdd:cd17876 156 LTKFDTIDdKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
47-319 |
9.07e-47 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 163.47 E-value: 9.07e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 47 IDED----FYEELEEILIGADVGVntvlKLIDQLRAEVKKR-KIEDPAE-------LQPILSEKLIELLKGDADAgLKLN 114
Cdd:TIGR01425 22 IDEEvintMLKEICTALLESDVNP----KLVRQMRNNIKKKiNLEDIASginkrklIQDAVFEELCNLVDPGVEA-FTPK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 115 PNGLSVILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMFDAVQ 194
Cdd:TIGR01425 97 KGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIASEGVE 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 195 AAKTRGVDILLCDTAGRLQNKVNLMEELNKIYRVIQrevpdaPHEVILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLD 274
Cdd:TIGR01425 177 KFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIK------PDSIIFVMDGSIGQAAFGQAKAFKDSVEVGSVIITKLD 250
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 950265447 275 GTAKGGIVVAIRQELSLPVKFVGLGEKMDDLQPFDSEQFVHALFG 319
Cdd:TIGR01425 251 GHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLG 295
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
54-319 |
3.09e-36 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 133.84 E-value: 3.09e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 54 ELEEILIGADVGVNTVLKLIDQLRAEVkkrkieDPAELQPILSEKLIELLKGDADAglKLNPNGlsVILFVGVNGVGKTT 133
Cdd:COG1419 110 ELLERLLEAGVSPELARELLEKLPEDL------SAEEAWRALLEALARRLPVAEDP--LLDEGG--VIALVGPTGVGKTT 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 134 TIGKMAHMFK-SQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVikqHSGSDPAavmfDAVQA-AKTRGVDILLCDTAGR 211
Cdd:COG1419 180 TIAKLAARFVlRGKKKVALITTDTYRIGAVEQLKTYARILGVPV---EVAYDPE----ELKEAlERLRDKDLVLIDTAGR 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 212 LQNKVNLMEELNKIYRVIQrevpdaPHEVILVLDATT-GQNALSQAKLFGDkTGLTGLVLSKLDGTAKGGIVVAIRQELS 290
Cdd:COG1419 253 SPRDPELIEELKALLDAGP------PIEVYLVLSATTkYEDLKEIVEAFSS-LGLDGLILTKLDETASLGSILNLLIRTG 325
|
250 260 270
....*....|....*....|....*....|
gi 950265447 291 LPVKFVGLGEKM-DDLQPFDSEQFVHALFG 319
Cdd:COG1419 326 LPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
120-314 |
1.44e-32 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 119.58 E-value: 1.44e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 120 VILFVGVNGVGKTTTIGKMAHMFK-SQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMfdavqaAKT 198
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVAEDPEDLADAL------ERL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 199 RGVDILLCDTAGRLQNKVNLMEELNKIYRViqrevpDAPHEVILVLDATT-GQNALSQAKLFGDkTGLTGLVLSKLDGTA 277
Cdd:cd17873 76 SDRDLILIDTAGRSPRDKEQLEELKELLGA------GEDIEVHLVLSATTkAKDLKEIIERFSP-LGYRGLILTKLDETT 148
|
170 180 190
....*....|....*....|....*....|....*...
gi 950265447 278 KGGIVVAIRQELSLPVKFVGLGEKM-DDLQPFDSEQFV 314
Cdd:cd17873 149 SLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLA 186
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
45-328 |
1.02e-27 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 111.91 E-value: 1.02e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 45 KKIDEDFYEELEEI--LIGADVGVNTVLKLIDQLRAEVKKRKIEdpAELQPILSEKLIELLK---GDADAGLK------- 112
Cdd:PRK05703 129 QKELDELRDELKELknLLEDQLSGLRQVERIPPEFAELYKRLKR--SGLSPEIAEKLLKLLLehmPPRERTAWryllell 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 113 -----------LNPNGlsVILFVGVNGVGKTTTIGKMA--HMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQ 179
Cdd:PRK05703 207 anmipvrvediLKQGG--VVALVGPTGVGKTTTLAKLAarYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVV 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 180 HSGSDpaavMFDAVQAAKTRgvDILLCDTAGRLQNKVNLMEELNKIYrviqrEVPDAPHEVILVLDATTGQNALSQA-KL 258
Cdd:PRK05703 285 YDPKE----LAKALEQLRDC--DVILIDTAGRSQRDKRLIEELKALI-----EFSGEPIDVYLVLSATTKYEDLKDIyKH 353
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 950265447 259 FGdKTGLTGLVLSKLDGTAKGGIVVAIRQELSLPVKFVGLGEKM-DDLQPFDSEQFVHALFGKWISEQKEE 328
Cdd:PRK05703 354 FS-RLPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLLGGFNKSEPSE 423
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
54-210 |
1.78e-16 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 78.15 E-value: 1.78e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 54 ELEEILIGADVGVNTVLKLIDQLRAEVKKRKIEdpAELQPILsEKLIELLKGDADAGlklnpNGLSVILFVGVNGVGKTT 133
Cdd:TIGR03499 138 KLYERLLEAGVSEELARELLEKLPEDADAEDAW--RWLREAL-EGMLPVKPEEDPIL-----EQGGVIALVGPTGVGKTT 209
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 950265447 134 TIGKMA--HMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDpaavMFDAVQaaKTRGVDILLCDTAG 210
Cdd:TIGR03499 210 TLAKLAarFALEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPVKVARDPKE----LREALD--RLRDKDLILIDTAG 282
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
120-305 |
2.73e-16 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 79.65 E-value: 2.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 120 VILFVGVNGVGKTTTIGKMAHMFKSQ--GKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDpaavMFDAVQaaK 197
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQhaPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAES----LLDLLE--R 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 198 TRGVDILLCDTAGRLQNKVNLMEELNkiYRVIQREVpdaphEVILVLDATTGQNALSQ-AKLFGdKTGLTGLVLSKLDGT 276
Cdd:PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLN--WLRAARQV-----TSLLVLPANAHFSDLDEvVRRFA-HAKPQGVVLTKLDET 497
|
170 180 190
....*....|....*....|....*....|
gi 950265447 277 AKGGIVVAIRQELSLPVKFVGLGEKM-DDL 305
Cdd:PRK12727 498 GRFGSALSVVVDHQMPITWVTDGQRVpDDL 527
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
120-317 |
1.44e-15 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 77.53 E-value: 1.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 120 VILFVGVNGVGKTTTIGKMAHMF--KSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVikqHSGSDpAAVMFDAVQAAK 197
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARCvaREGADQLALLTTDSFRIGALEQLRIYGRILGVPV---HAVKD-AADLRFALAALG 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 198 TRgvDILLCDTAGRLQNKVNLMEE---LNKIYRVIQRevpdaphevILVLDATTGQNALSQ---AKLFGDKTGLTGLVLS 271
Cdd:PRK14723 263 DK--HLVLIDTVGMSQRDRNVSEQiamLCGVGRPVRR---------LLLLNAASHGDTLNEvvhAYRHGAGEDVDGCIIT 331
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 950265447 272 KLDGTAKGGIV--VAIRQElsLPVKFVGLGEKM-DDLQPFDSEQFV-HAL 317
Cdd:PRK14723 332 KLDEATHLGPAldTVIRHR--LPVHYVSTGQKVpEHLELAQADELVdRAF 379
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
30-103 |
3.50e-14 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 66.81 E-value: 3.50e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 950265447 30 RDAFVDRVDDLFSRrKKIDEDFYEELEEILIGADVGVNTVLKLIDQLRAEVKK---RKIEDPAELQPILSEKLIELL 103
Cdd:smart00963 2 SKALGKLLGELFLT-EKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKGevlKGLTPKQEVKKILKEELVKIL 77
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
89-318 |
6.99e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 68.82 E-value: 6.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 89 AELQPILSEKLIELLKGDAD--AGLKLNPNGLS----------------VILFVGVNGVGKTTTIGKMAH--MFKSQGKK 148
Cdd:PRK14721 144 AGFSPLLSRHLLEKLPADRDfeQSLKKTISLLTlnlrtiggdeiieqggVYALIGPTGVGKTTTTAKLAAraVIRHGADK 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 149 VLMAAGDTFRAGAIEQLETWGERVGVDVikqHSGSDPA--AVMFDAVqaaktRGVDILLCDTAGRLQNKVNLMEELNKIy 226
Cdd:PRK14721 224 VALLTTDSYRIGGHEQLRIYGKLLGVSV---RSIKDIAdlQLMLHEL-----RGKHMVLIDTVGMSQRDQMLAEQIAML- 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 227 rviqrevPDAPHEV--ILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAKGGIV--VAIRQELSLpvKFVGLGEKM 302
Cdd:PRK14721 295 -------SQCGTQVkhLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIAldAVIRRKLVL--HYVTNGQKV 365
|
250
....*....|....*..
gi 950265447 303 -DDLQPFDSEQFVHALF 318
Cdd:PRK14721 366 pEDLHEANSRYLLHRIF 382
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
35-327 |
9.42e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 68.39 E-value: 9.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 35 DRVDDLFSRRKKIDEDFY-------EELEEILIGADVGVNTVLKLIDQLRAEVKKRKIEDpaeLQPILSEKLIELLKGDA 107
Cdd:PRK12723 87 DVLKEVKSLKNELAHKKEeinhptiLKIEDILRENDFSESYIKDINEFIKKEFSLSDLDD---YDKVRDSVIIYIAKTIK 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 108 DAGLKLNPNGLSVILFVGVNGVGKTTTIGKMAHMF----KSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGS 183
Cdd:PRK12723 164 CSGSIIDNLKKRVFILVGPTGVGKTTTIAKLAAIYginsDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFK 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 184 DPAAvmfdavQAAKTRGVDILLCDTAGRLQNKVNLMEELNKIYRVIQREVpdaphEVILVLDATTG----QNALSQAKLF 259
Cdd:PRK12723 244 DLKE------EITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDA-----EFHLAVSSTTKtsdvKEIFHQFSPF 312
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 950265447 260 GDKTgltgLVLSKLDGTAKGGIVVAIRQELSLPVKFVGLGEKM-DDLQPFDSEQFVHALFGKWISEQKE 327
Cdd:PRK12723 313 SYKT----VIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIVpHNISIAEPLTFIKKINGYRISDDAE 377
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
33-99 |
2.04e-12 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 61.71 E-value: 2.04e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 950265447 33 FVDRVDDLFSR---RKKIDEDFYEE----LEEILIGADVGVNTVLKLIDQLR-AEVKKRKIEDPAELQPILSEKL 99
Cdd:pfam02881 1 LGEKLSSLFKGlrgKGKIDEEDLEEalkeLEEALLEADVGVEVVKKIIERLReKAVGEKKLKPPQEVKKILKEEL 75
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
1-309 |
3.98e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 66.53 E-value: 3.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 1 MSFFKRL--KESISNKAEAVTNKFKegltktrDAFVDRVDDLFSRrkkidEDFYEE-LEEILigadVGVNTVLKLIDQLR 77
Cdd:PRK12724 129 LSFEKELfeKNSFLESETTIVRKEK-------DSPLQRLGERLVR-----EGMSQSyVEEMA----SKLEERLSPVDQGR 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 78 -AEVKKRKIEdpaelqpilseKLIELLKGDADAGLKLNPNGLSVILFVGVNGVGKTTTIGKM-AHMFKSQGKKVLMAAGD 155
Cdd:PRK12724 193 nHNVTERAVT-----------YLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLaAKYFLHMGKSVSLYTTD 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 156 TFRAGAIEQLETWGERVGVDVIkqhsgsdPAAVMFDAVQAAKTRGVDILLCDTAGRLQNKVNLMEELNKIYRVIQREvpD 235
Cdd:PRK12724 262 NYRIAAIEQLKRYADTMGMPFY-------PVKDIKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEK--D 332
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 950265447 236 APhEVILVLDATTG-QNALSQAKLFgDKTGLTGLVLSKLDGTAKGGIVVAIRQELSLPVKFVGLGEKMddlqPFD 309
Cdd:PRK12724 333 SV-ENLLVLSSTSSyHHTLTVLKAY-ESLNYRRILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEV----PFD 401
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
120-248 |
4.14e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.16 E-value: 4.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 120 VILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLEtwgervGVDVIKQHSGSDPAAVMFDAVQAAKTR 199
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARKL 77
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 950265447 200 GVDILLCDTAGRLQNKVNLMEELNKIyrVIQREVPDAPHEVILVLDATT 248
Cdd:smart00382 78 KPDVLILDEITSLLDAEQEALLLLLE--ELRLLLLLKSEKNLTVILTTN 124
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
118-325 |
5.10e-12 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 66.24 E-value: 5.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 118 LSVILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIkqhSGSDPAAvMFDAVQAAK 197
Cdd:PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI---AVRDEAA-MTRALTYFK 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 198 TRG-VDILLCDTAGRLQNKVNLMEELNKIYRVIQrevpdaPHEVILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGT 276
Cdd:PRK11889 317 EEArVDYILIDTAGKNYRASETVEEMIETMGQVE------PDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDET 390
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 950265447 277 AKGGIVVAIRQELSLPVKFvglgekMDDLQpfDSEQFVHALFGKWISEQ 325
Cdd:PRK11889 391 ASSGELLKIPAVSSAPIVL------MTDGQ--DVKKNIHIATAEHLAKQ 431
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
120-304 |
1.10e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 65.13 E-value: 1.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 120 VILFVGVNGVGKTTTIGKMAH--MFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSGSDPAAVMfdavqaAK 197
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAArcVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL------AE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 198 TRGVDILLCDTAGRLQNKVNLMEELNKIYRViqrevpDAPHEVILVLDATTGQNALSQ-AKLFGDKTG--------LTGL 268
Cdd:PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGA------DTPVQRLLLLNATSHGDTLNEvVQAYRSAAGqpkaalpdLAGC 286
|
170 180 190
....*....|....*....|....*....|....*.
gi 950265447 269 VLSKLDGTAKGGIVVAIRQELSLPVKFVGLGEKMDD 304
Cdd:PRK14722 287 ILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
74-304 |
1.44e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 64.76 E-value: 1.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 74 DQLRAEVKKRKIEDPAELQPIlSEKLIELLKGDADAGLKLNPNGLSVILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAA 153
Cdd:PRK12726 163 DFMQAGRKQFKQVETAHLDDI-TDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 154 GDTFRAGAIEQLETWGERVGVDVIKQHSgsdpAAVMFDAVQ-AAKTRGVDILLCDTAGRLQNKVNLMEELNKIYRVIqre 232
Cdd:PRK12726 242 TDTFRSGAVEQFQGYADKLDVELIVATS----PAELEEAVQyMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV--- 314
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 950265447 233 vpdapHEVILVLDATTGQNALSQAKLFGD--KTGLTGLVLSKLDGTAKGGIVVAIRQELSLPVKFVGLGEKMDD 304
Cdd:PRK12726 315 -----HPDLTCFTFSSGMKSADVMTILPKlaEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITE 383
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
78-300 |
3.62e-11 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 62.84 E-value: 3.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 78 AEVKKRKIEDPAelqpILSEKLIELLKGDADAGLKLN---PNGLSVILFVGVNGVGKTTTIGKMAHMFKSQGKKVLMAAG 154
Cdd:PRK06731 36 AEKLKVKFENAT----MITEEVIEYILEDMSSHFNTEnvfEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 155 DTFRAGAIEQLETWGERVGVDVIkqhSGSDPAAVMFDAVQAAKTRGVDILLCDTAGRLQNKVNLMEELNKIYRVIQrevp 234
Cdd:PRK06731 112 DHSRIGTVQQLQDYVKTIGFEVI---AVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVE---- 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 950265447 235 daPHEVILVLDATTGQNALSQAKLFGDKTGLTGLVLSKLDGTAKGGIVVAIRQELSLPVKFVGLGE 300
Cdd:PRK06731 185 --PDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 248
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
124-301 |
3.18e-07 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 51.51 E-value: 3.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 124 VGVNGVGKTTTIGKMAHMF--KSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVikqHSGSDPAavmfDAVQA-AKTRG 200
Cdd:PRK06995 262 MGPTGVGKTTTTAKLAARCvmRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV---HAVKDAA----DLRLAlSELRN 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 201 VDILLCDTAGRLQNKVNLMEE---LNKIYRVIQRevpdaphevILVLDATTGQNALSQ-AKLFGDKtGLTGLVLSKLDGT 276
Cdd:PRK06995 335 KHIVLIDTIGMSQRDRMVSEQiamLHGAGAPVKR---------LLLLNATSHGDTLNEvVQAYRGP-GLAGCILTKLDEA 404
|
170 180
....*....|....*....|....*..
gi 950265447 277 AKGGIV--VAIRQElsLPVKFVGLGEK 301
Cdd:PRK06995 405 ASLGGAldVVIRYK--LPLHYVSNGQR 429
|
|
| eps_fam |
TIGR01007 |
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ... |
117-274 |
1.01e-03 |
|
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273392 [Multi-domain] Cd Length: 204 Bit Score: 39.73 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 117 GLSVILFVGVN-GVGKTTTIGKMAHMFKSQGKKVLMAAGDTFRAGAIEQLETWGERVGVDVIKQHSgsdpaAVMFDAVQA 195
Cdd:TIGR01007 16 EIKVLLITSVKpGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGT-----TDLSDAICD 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950265447 196 AKTRGVDILlcdTAGR--------LQNK--VNLMEELNKIYRVIQREVP------DAP------HEVILVLDA-TTGQNA 252
Cdd:TIGR01007 91 TNIENLDVI---TAGPvppnptelLQSSnfKTLIETLRKRFDYIIIDTPpigtvtDAAiiaracDASILVTDAgKIKKRE 167
|
170 180
....*....|....*....|....
gi 950265447 253 LSQAKLFGDKTG--LTGLVLSKLD 274
Cdd:TIGR01007 168 VKKAKEQLEQAGsnFLGVVLNKVD 191
|
|
| TMPK |
cd01672 |
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ... |
121-175 |
7.58e-03 |
|
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Pssm-ID: 238835 Cd Length: 200 Bit Score: 36.86 E-value: 7.58e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 950265447 121 ILFVGVNGVGKTTTIGKMAHMFKSQGKKVLM--AAGDTFRAGAIEQLETWGERVGVD 175
Cdd:cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLtrEPGGTPIGEAIRELLLDPEDEKMD 59
|
|
| |
