MULTISPECIES: tRNA epoxyqueuosine(34) reductase QueG [Enterococcus]
epoxyqueuosine reductase family protein( domain architecture ID 1002072)
epoxyqueuosine reductase family protein such as epoxyqueuosine reductase, which catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
List of domain hits
Name | Accession | Description | Interval | E-value | ||||||
TIGR00276 super family | cl36614 | epoxyqueuosine reductase; This model was rebuilt to exclude archaeal homologs, now that there ... |
7-344 | 4.59e-162 | ||||||
epoxyqueuosine reductase; This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification] The actual alignment was detected with superfamily member TIGR00276: Pssm-ID: 272993 [Multi-domain] Cd Length: 337 Bit Score: 458.14 E-value: 4.59e-162
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Name | Accession | Description | Interval | E-value | ||||||
TIGR00276 | TIGR00276 | epoxyqueuosine reductase; This model was rebuilt to exclude archaeal homologs, now that there ... |
7-344 | 4.59e-162 | ||||||
epoxyqueuosine reductase; This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification] Pssm-ID: 272993 [Multi-domain] Cd Length: 337 Bit Score: 458.14 E-value: 4.59e-162
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QueG | COG1600 | Epoxyqueuosine reductase QueG (queuosine biosynthesis) [Translation, ribosomal structure and ... |
1-348 | 1.65e-154 | ||||||
Epoxyqueuosine reductase QueG (queuosine biosynthesis) [Translation, ribosomal structure and biogenesis]; Epoxyqueuosine reductase QueG (queuosine biosynthesis) is part of the Pathway/BioSystem: tRNA modification Pssm-ID: 441208 [Multi-domain] Cd Length: 345 Bit Score: 439.25 E-value: 1.65e-154
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Fer4_16 | pfam13484 | 4Fe-4S double cluster binding domain; |
189-251 | 2.47e-24 | ||||||
4Fe-4S double cluster binding domain; Pssm-ID: 463893 [Multi-domain] Cd Length: 65 Bit Score: 94.86 E-value: 2.47e-24
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MtMvhB_like | cd10549 | Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ... |
177-251 | 2.20e-03 | ||||||
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction. Pssm-ID: 319871 [Multi-domain] Cd Length: 128 Bit Score: 37.76 E-value: 2.20e-03
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Name | Accession | Description | Interval | E-value | ||||||
TIGR00276 | TIGR00276 | epoxyqueuosine reductase; This model was rebuilt to exclude archaeal homologs, now that there ... |
7-344 | 4.59e-162 | ||||||
epoxyqueuosine reductase; This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification] Pssm-ID: 272993 [Multi-domain] Cd Length: 337 Bit Score: 458.14 E-value: 4.59e-162
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QueG | COG1600 | Epoxyqueuosine reductase QueG (queuosine biosynthesis) [Translation, ribosomal structure and ... |
1-348 | 1.65e-154 | ||||||
Epoxyqueuosine reductase QueG (queuosine biosynthesis) [Translation, ribosomal structure and biogenesis]; Epoxyqueuosine reductase QueG (queuosine biosynthesis) is part of the Pathway/BioSystem: tRNA modification Pssm-ID: 441208 [Multi-domain] Cd Length: 345 Bit Score: 439.25 E-value: 1.65e-154
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Fer4_16 | pfam13484 | 4Fe-4S double cluster binding domain; |
189-251 | 2.47e-24 | ||||||
4Fe-4S double cluster binding domain; Pssm-ID: 463893 [Multi-domain] Cd Length: 65 Bit Score: 94.86 E-value: 2.47e-24
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QueG_DUF1730 | pfam08331 | Epoxyqueuosine reductase QueG, DUF1730; This domain of unknown function occurs in ... |
54-136 | 2.25e-20 | ||||||
Epoxyqueuosine reductase QueG, DUF1730; This domain of unknown function occurs in Epoxyqueuosine reductase QueG, an iron-sulfur cluster-binding protein, together with the 4Fe-4S binding domain (pfam00037). QueG catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr). Pssm-ID: 462431 [Multi-domain] Cd Length: 77 Bit Score: 84.51 E-value: 2.25e-20
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RDH | TIGR02486 | reductive dehalogenase; This model represents a family of corrin and 8-iron Fe-S ... |
142-268 | 2.92e-13 | ||||||
reductive dehalogenase; This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene. Pssm-ID: 274158 Cd Length: 314 Bit Score: 69.77 E-value: 2.92e-13
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Fer4_7 | pfam12838 | 4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ... |
189-251 | 6.31e-05 | ||||||
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters. Pssm-ID: 463724 [Multi-domain] Cd Length: 51 Bit Score: 40.20 E-value: 6.31e-05
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HEAT_2 | pfam13646 | HEAT repeats; This family includes multiple HEAT repeats. |
301-342 | 1.66e-03 | ||||||
HEAT repeats; This family includes multiple HEAT repeats. Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 37.32 E-value: 1.66e-03
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HEAT_2 | pfam13646 | HEAT repeats; This family includes multiple HEAT repeats. |
301-345 | 1.81e-03 | ||||||
HEAT repeats; This family includes multiple HEAT repeats. Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 37.32 E-value: 1.81e-03
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MtMvhB_like | cd10549 | Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ... |
177-251 | 2.20e-03 | ||||||
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction. Pssm-ID: 319871 [Multi-domain] Cd Length: 128 Bit Score: 37.76 E-value: 2.20e-03
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HEAT | COG1413 | HEAT repeat [General function prediction only]; |
301-345 | 3.21e-03 | ||||||
HEAT repeat [General function prediction only]; Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 37.69 E-value: 3.21e-03
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RnfB | COG2878 | Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and ... |
186-249 | 4.17e-03 | ||||||
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase Pssm-ID: 442125 [Multi-domain] Cd Length: 254 Bit Score: 38.44 E-value: 4.17e-03
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DsrA | COG2221 | Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ... |
189-249 | 4.24e-03 | ||||||
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism]; Pssm-ID: 441823 [Multi-domain] Cd Length: 69 Bit Score: 35.41 E-value: 4.24e-03
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HEAT | COG1413 | HEAT repeat [General function prediction only]; |
301-356 | 5.59e-03 | ||||||
HEAT repeat [General function prediction only]; Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 36.92 E-value: 5.59e-03
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HEAT | COG1413 | HEAT repeat [General function prediction only]; |
301-356 | 5.75e-03 | ||||||
HEAT repeat [General function prediction only]; Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 36.92 E-value: 5.75e-03
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HEAT | COG1413 | HEAT repeat [General function prediction only]; |
302-348 | 8.26e-03 | ||||||
HEAT repeat [General function prediction only]; Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 36.53 E-value: 8.26e-03
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DMSOR_beta_like | cd16373 | uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ... |
191-268 | 9.94e-03 | ||||||
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system. Pssm-ID: 319895 [Multi-domain] Cd Length: 154 Bit Score: 36.46 E-value: 9.94e-03
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Blast search parameters | ||||
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