|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
1-674 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 1091.02 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 1 MADVPADLAAVWPRVLEKLLGEGHGQGVEVKDERWIKRCQPLALVADTALLAVPNEFAKGVLEGRLAPIVSETLSRECGR 80
Cdd:PRK14086 1 MADVQADLAAVWPRVLEQLLGEGDGQSVPAKDEAWLKRCQPLALVADTALLAVPNEFAKEVLEGRLAPIISETLSRELGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 81 PIRIAITVDSSVGE-QPPPPVQRRFEEPELPSVPaqgrdgydsrapydgqgrdarggyenqnayenkntyepqngydgqa 159
Cdd:PRK14086 81 PIRIAITVDPSAGEpAPPPPHARRTSEPELPRPG---------------------------------------------- 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 160 RDPYDGYGRHRAEDRGPGrgeqlgggageqlppprsehpAGRSDQLPTARPAYPSEYQRPEPGAWPRPSqDDYGWQQQRL 239
Cdd:PRK14086 115 RRPYEGYGGPRADDRPPG---------------------LPRQDQLPTARPAYPAYQQRPEPGAWPRAA-DDYGWQQQRL 172
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 240 GFPERDPYASPSSDYRSQSRDRSPYDQQRSEYDQHRGDYDRPGADSDYPRQDRRELPEPPPGSGHVHRGGP--------- 310
Cdd:PRK14086 173 GFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPgpperddap 252
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 311 ----ASSAPGPLAAQPAPASGPGEPTARLNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLH 386
Cdd:PRK14086 253 vvpiRPSAPGPLAAQPAPAPGPGEPTARLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLH 332
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 387 AIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQ 466
Cdd:PRK14086 333 AIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQ 412
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 467 IVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRV 546
Cdd:PRK14086 413 IVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRV 492
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 547 TAFASLNRQPVDLGLTEIVLKDLIPggENASPEITATAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDL 626
Cdd:PRK14086 493 TAFASLNRQPVDLGLTEIVLRDLIP--EDSAPEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDL 570
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 1001801327 627 SLPKIGAQFGnRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIKNG 674
Cdd:PRK14086 571 SLPKIGQQFG-RDHTTVMHADRKIRALMAERRSIYNQVTELTNRIKNG 617
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
307-671 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 559.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 307 RGGPASSAPGPLAAQPAPASGPGEPTA--RLNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHL 384
Cdd:TIGR00362 74 GEDEEELEPNSKKPEPAPPEAPAPPSSasGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 385 LHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNAN 464
Cdd:TIGR00362 154 LHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENN 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 465 KQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALI 544
Cdd:TIGR00362 234 KQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALN 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 545 RVTAFASLNRQPVDLGLTEIVLKDLIPGGENaspEITATAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELT 624
Cdd:TIGR00362 314 RLLAYASLTGKPITLELAKEALKDLLRAQKK---EITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELT 390
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1001801327 625 DLSLPKIGAQFGNRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 671
Cdd:TIGR00362 391 DLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
335-640 |
1.21e-176 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 504.73 E-value: 1.21e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 335 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFI 414
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 415 NSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLI 494
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 495 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPgge 574
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLR--- 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1001801327 575 NASPEITATAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGNRDH 640
Cdd:COG0593 238 AQKKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
335-553 |
6.76e-132 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 387.07 E-value: 6.76e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 335 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFI 414
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 415 NSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLI 494
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1001801327 495 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLN 553
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
584-671 |
1.04e-38 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 137.65 E-value: 1.04e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 584 AIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGNRDHTTVMHADRKIRALMAERRSIYNQ 663
Cdd:cd06571 3 LIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELKED 82
|
....*...
gi 1001801327 664 VTELTNRI 671
Cdd:cd06571 83 VEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
585-649 |
8.09e-29 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 109.13 E-value: 8.09e-29
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1001801327 585 IMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGNRDHTTVMHADRK 649
Cdd:smart00760 5 IIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
373-440 |
7.14e-06 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 47.85 E-value: 7.14e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1001801327 373 IYGESGLGKTHLLHAIGHYArsLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDI 440
Cdd:NF038214 95 LLGPPGTGKTHLAIALGYAA--CRQGYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDEL 160
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
1-674 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 1091.02 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 1 MADVPADLAAVWPRVLEKLLGEGHGQGVEVKDERWIKRCQPLALVADTALLAVPNEFAKGVLEGRLAPIVSETLSRECGR 80
Cdd:PRK14086 1 MADVQADLAAVWPRVLEQLLGEGDGQSVPAKDEAWLKRCQPLALVADTALLAVPNEFAKEVLEGRLAPIISETLSRELGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 81 PIRIAITVDSSVGE-QPPPPVQRRFEEPELPSVPaqgrdgydsrapydgqgrdarggyenqnayenkntyepqngydgqa 159
Cdd:PRK14086 81 PIRIAITVDPSAGEpAPPPPHARRTSEPELPRPG---------------------------------------------- 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 160 RDPYDGYGRHRAEDRGPGrgeqlgggageqlppprsehpAGRSDQLPTARPAYPSEYQRPEPGAWPRPSqDDYGWQQQRL 239
Cdd:PRK14086 115 RRPYEGYGGPRADDRPPG---------------------LPRQDQLPTARPAYPAYQQRPEPGAWPRAA-DDYGWQQQRL 172
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 240 GFPERDPYASPSSDYRSQSRDRSPYDQQRSEYDQHRGDYDRPGADSDYPRQDRRELPEPPPGSGHVHRGGP--------- 310
Cdd:PRK14086 173 GFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPgpperddap 252
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 311 ----ASSAPGPLAAQPAPASGPGEPTARLNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLH 386
Cdd:PRK14086 253 vvpiRPSAPGPLAAQPAPAPGPGEPTARLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLH 332
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 387 AIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQ 466
Cdd:PRK14086 333 AIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQ 412
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 467 IVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRV 546
Cdd:PRK14086 413 IVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRV 492
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 547 TAFASLNRQPVDLGLTEIVLKDLIPggENASPEITATAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDL 626
Cdd:PRK14086 493 TAFASLNRQPVDLGLTEIVLRDLIP--EDSAPEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDL 570
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 1001801327 627 SLPKIGAQFGnRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIKNG 674
Cdd:PRK14086 571 SLPKIGQQFG-RDHTTVMHADRKIRALMAERRSIYNQVTELTNRIKNG 617
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
332-673 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 590.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 332 TARLNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTN 411
Cdd:PRK00149 63 ALQLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 412 EFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEW 491
Cdd:PRK00149 143 DFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEW 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 492 GLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIP 571
Cdd:PRK00149 223 GLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLA 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 572 ggeNASPEITATAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGNRDHTTVMHADRKIR 651
Cdd:PRK00149 303 ---AQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIE 379
|
330 340
....*....|....*....|..
gi 1001801327 652 ALMAERRSIYNQVTELTNRIKN 673
Cdd:PRK00149 380 KLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
307-671 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 559.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 307 RGGPASSAPGPLAAQPAPASGPGEPTA--RLNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHL 384
Cdd:TIGR00362 74 GEDEEELEPNSKKPEPAPPEAPAPPSSasGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 385 LHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNAN 464
Cdd:TIGR00362 154 LHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENN 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 465 KQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALI 544
Cdd:TIGR00362 234 KQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALN 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 545 RVTAFASLNRQPVDLGLTEIVLKDLIPGGENaspEITATAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELT 624
Cdd:TIGR00362 314 RLLAYASLTGKPITLELAKEALKDLLRAQKK---EITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELT 390
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1001801327 625 DLSLPKIGAQFGNRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 671
Cdd:TIGR00362 391 DLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
335-640 |
1.21e-176 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 504.73 E-value: 1.21e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 335 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFI 414
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 415 NSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLI 494
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 495 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPgge 574
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLR--- 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1001801327 575 NASPEITATAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGNRDH 640
Cdd:COG0593 238 AQKKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
335-553 |
6.76e-132 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 387.07 E-value: 6.76e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 335 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFI 414
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 415 NSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLI 494
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1001801327 495 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLN 553
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
335-671 |
1.12e-74 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 247.06 E-value: 1.12e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 335 LNPKYLFDTFVIGASN----RFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSlyPGTRVRYVSSEEFT 410
Cdd:PRK12422 104 LDPLMTFANFLVTPENdlphRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVRSELFT 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 411 NEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFE 490
Cdd:PRK12422 182 EHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFE 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 491 WGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGAL----IRVtAFASLNRQPVDLGLTEIVL 566
Cdd:PRK12422 262 WGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALtllaKRV-AYKKLSHQLLYVDDIKALL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 567 KDLIPGGEnaSPEITATAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGnRDHTTVMHA 646
Cdd:PRK12422 341 HDVLEAAE--SVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVFS-RDHSTVISS 417
|
330 340
....*....|....*....|....*.
gi 1001801327 647 DRKIRALMAER-RSIYNQVTELTNRI 671
Cdd:PRK12422 418 IRAISQKLEEDdRDISMAIQEITKRL 443
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
584-671 |
1.04e-38 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 137.65 E-value: 1.04e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 584 AIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGNRDHTTVMHADRKIRALMAERRSIYNQ 663
Cdd:cd06571 3 LIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELKED 82
|
....*...
gi 1001801327 664 VTELTNRI 671
Cdd:cd06571 83 VEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
585-650 |
7.42e-35 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 126.36 E-value: 7.42e-35
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1001801327 585 IMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGNRDHTTVMHADRKI 650
Cdd:pfam08299 4 IIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
585-649 |
8.09e-29 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 109.13 E-value: 8.09e-29
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1001801327 585 IMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGNRDHTTVMHADRK 649
Cdd:smart00760 5 IIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
371-543 |
7.32e-27 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 109.20 E-value: 7.32e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 371 LFIYGESGLGKTHLLHAIGHYARSLypGTRVRYVSSEEFTNEFINSIRDGkgdsfrkryREMDILLVDDIQFLADKESTQ 450
Cdd:TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQADPEVLEGL---------EQADLVCLDDVEAIAGQPEWQ 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 451 EEFFHTFNTLHNANKQIVLSSDRPPKQL-VTLEDrLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIA 529
Cdd:TIGR03420 110 EALFHLYNRVREAGGRLLIAGRAAPAQLpLRLPD-LRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLL 188
|
170
....*....|....
gi 1001801327 530 SRISRNIRELEGAL 543
Cdd:TIGR03420 189 RHGSRDMGSLMALL 202
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
368-493 |
3.55e-19 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 84.51 E-value: 3.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 368 YNPLFIYGESGLGKTHLLHAIGHYarSLYPGTRVRYVSSEEFTNEFINSIRDG----KGDSFRKRYREMDILLVDDIQFL 443
Cdd:cd00009 19 PKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGhflvRLLFELAEKAKPGVLFIDEIDSL 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1001801327 444 -ADKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLV--TLEDRLRNRFEWGL 493
Cdd:cd00009 97 sRGAQNALLRVLETLNDLRidRENVRVIGATNRPLLGDLdrALYDRLDIRIVIPL 151
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
371-561 |
1.13e-17 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 82.72 E-value: 1.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 371 LFIYGESGLGKTHLLHAIGHYArsLYPGTRVRYVSSEEFTNEFINSirdgkgdsfrkryREMDILLVDDIQFLADKEstQ 450
Cdd:PRK08903 45 FYLWGEAGSGRSHLLQALVADA--SYGGRNARYLDAASPLLAFDFD-------------PEAELYAVDDVERLDDAQ--Q 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 451 EEFFHTFNTLH-NANKQIVLSSDRPPKQLVTLEDrLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIA 529
Cdd:PRK08903 108 IALFNLFNRVRaHGQGALLVAGPAAPLALPLRED-LRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLL 186
|
170 180 190
....*....|....*....|....*....|...
gi 1001801327 530 SRISRNIRELEgALIRVTAFASLNRQ-PVDLGL 561
Cdd:PRK08903 187 THFRRDMPSLM-ALLDALDRYSLEQKrPVTLPL 218
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
371-539 |
5.06e-14 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 72.02 E-value: 5.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 371 LFIYGESGLGKTHLLHAIGHYARSLypGTRVRYVSSEEFTNeFINSIRDGkgdsfrkrYREMDILLVDDIQFLADKESTQ 450
Cdd:PRK08084 48 IYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW-FVPEVLEG--------MEQLSLVCIDNIECIAGDELWE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 451 EEFFHTFN-TLHNANKQIVLSSDRPPKQL-VTLEDrLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFI 528
Cdd:PRK08084 117 MAIFDLYNrILESGRTRLLITGDRPPRQLnLGLPD-LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFL 195
|
170
....*....|.
gi 1001801327 529 ASRISRNIREL 539
Cdd:PRK08084 196 LKRLDREMRTL 206
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
371-478 |
3.85e-12 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 66.73 E-value: 3.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 371 LFIYGESGLGKTHLLHAIGHYARSLypGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQ 450
Cdd:COG1484 102 LILLGPPGTGKTHLAIALGHEACRA--GYRVRFTTAPDLVNELKEARADGRLERLLKRLAKVDLLILDELGYLPLDAEGA 179
|
90 100
....*....|....*....|....*...
gi 1001801327 451 EEFFHTFNTLHNaNKQIVLSSDRPPKQL 478
Cdd:COG1484 180 ELLFELISDRYE-RRSTIITSNLPFSEW 206
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
369-495 |
3.91e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 61.62 E-value: 3.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 369 NPLFIYGESGLGKTHLLHAIGHYARslYPGTRVRYVSSEEFTNEFINSIR----------DGKGDSFRK-----RYREMD 433
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLLliivggkkasGSGELRLRLalalaRKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1001801327 434 ILLVDDIQFLADKESTQEEFFH-----TFNTLHNANKQIVLSS-DRPPKQLVTLEDRLRNRFEWGLIT 495
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLeelrlLLLLKSEKNLTVILTTnDEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
12-115 |
1.59e-09 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 60.62 E-value: 1.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 12 WPRVLEKLLGEghgqgveVKD---ERWIKRCQPLALVADTALLAVPNEFAKGVLEGRLAPIVSETLSRECGRPIRIAITV 88
Cdd:TIGR00362 1 WNRILERLEKE-------LSEqeyNTWFKPLKLLSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTV 73
|
90 100
....*....|....*....|....*..
gi 1001801327 89 DSSVGEQPPPPvqrRFEEPELPSVPAQ 115
Cdd:TIGR00362 74 GEDEEELEPNS---KKPEPAPPEAPAP 97
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
371-481 |
8.79e-08 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 54.52 E-value: 8.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 371 LFIYGESGLGKTHLLHAIghyARSLYP-GTRVRYVSSEeftnEFINSIRDGKGDSF---RKRY---REMDILLVDDIQFL 443
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCI---AKELLDrGKSVIYRTAD----ELIEILREIRFNNDkelEEVYdllINCDLLIIDDLGTE 258
|
90 100 110
....*....|....*....|....*....|....*...
gi 1001801327 444 ADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTL 481
Cdd:PRK06835 259 KITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKT 296
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
584-650 |
2.61e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 49.78 E-value: 2.61e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1001801327 584 AIMGATADYFGLTVEDLCGTSRGR-ALVTARQIAMYLCRELTDLSLPKIGAQFGnRDHTTVMHADRKI 650
Cdd:PRK06030 27 AVIDLLALAFGVSGAEIASPLRGRrEVSRIRQIAMYVAHVSLGWPMNEVALAFG-RDRTTVGHACHTV 93
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
373-440 |
7.14e-06 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 47.85 E-value: 7.14e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1001801327 373 IYGESGLGKTHLLHAIGHYArsLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDI 440
Cdd:NF038214 95 LLGPPGTGKTHLAIALGYAA--CRQGYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDEL 160
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
369-474 |
1.06e-05 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 47.44 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 369 NPLFIyGESGLGKTHLLHAIGHYArsLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKES 448
Cdd:pfam01695 94 NVVLL-GPPGVGKTHLAIALGVEA--CRAGYSVRFTSAADLVNQLKRAHGDGKLTRKLQQLLKPDVLILDEWGYLPLDQA 170
|
90 100
....*....|....*....|....*.
gi 1001801327 449 TQEEFFHTFNTLHNaNKQIVLSSDRP 474
Cdd:pfam01695 171 EANLLFQVISKRYE-HRSIILTSNLP 195
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
7-75 |
1.09e-05 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 48.21 E-value: 1.09e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1001801327 7 DLAAVWPRVLEKL---LGEghgqgveVKDERWIKRCQPLALVADTALLAVPNEFAKGVLEGRLAPIVSETLS 75
Cdd:PRK00149 1 NLQSLWEKVLERLkdeLSE-------QEYETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ 65
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
6-334 |
9.55e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 45.75 E-value: 9.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 6 ADLAAVWPRVLEKLlgeghGQGVEVKDERWIKRCQPLALVADTALLAVPNEFAKGVL-EGRLAPIVSETLSRECGRPIRI 84
Cdd:PRK07764 510 ATLRERWPEILAAV-----PKRSRKTWAILLPEATVLGVRGDTLVLGFSTGGLARRFaSPGNAEVLVTALAEELGGDWQV 584
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 85 AITVD---SSVGEQPPPPVQRRfEEPELPSVPAQGrdgydsrAPYDGQGRDARGGyenqnayenkntyepqngydgQARD 161
Cdd:PRK07764 585 EAVVGpapGAAGGEGPPAPASS-GPPEEAARPAAP-------AAPAAPAAPAPAG---------------------AAAA 635
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 162 PydgygrhraedrGPGRGEQLGGGAGEQLPPPRSEHPAGRSDQLPTARPAYPseyqrPEPGAWPRPSQDdyGWQQQRLGF 241
Cdd:PRK07764 636 P------------AEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGG-----AAPAAPPPAPAP--AAPAAPAGA 696
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 242 PERDPYASPS----SDYRSQSRDRSPYDQQRSEYDQHRGDYDRPGADSDYPRQDRRELPEPPPGSGHVHRGGPASSAPGP 317
Cdd:PRK07764 697 APAQPAPAPAatppAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPP 776
|
330 340
....*....|....*....|...
gi 1001801327 318 LAAQPAP------ASGPGEPTAR 334
Cdd:PRK07764 777 SPPSEEEemaeddAPSMDDEDRR 799
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
371-440 |
8.53e-04 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 41.78 E-value: 8.53e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1001801327 371 LFIYGESGLGKTHLLHAIGHY-ARSLYPGTRVRYvssEEFTNEFINSIRDGkgdSFRK---RYREMDILLVDDI 440
Cdd:PRK08939 159 LYLYGDFGVGKSYLLAAIANElAKKGVSSTLLHF---PEFIRELKNSISDG---SVKEkidAVKEAPVLMLDDI 226
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
87-337 |
2.18e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.31 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 87 TVDSSVGEQPPPPVQRrfeEPELPSVPAQGRDGYDSRAPYDGQGRDARGG-YENQNAYENKNTYEPQNGYDGQARDPYDG 165
Cdd:PHA03307 182 TARAPSSPPAEPPPST---PPAAASPRPPRRSSPISASASSPAPAPGRSAaDDAGASSSDSSSSESSGCGWGPENECPLP 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 166 ygrHRAEDRGPGRGEQLGGGAGEQLPPPRSEHPAGRSDQLPTARPAYPSEyqrpePGAWPRPSQDDYGwqqqrlgfpERD 245
Cdd:PHA03307 259 ---RPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGS-----GPAPSSPRASSSS---------SSS 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 246 PYASPSSDYRSQSRDRSPYDQQRSEYDQHRGDyDRPGADSDYPRQDRRELPEPPPGSGHVHRGGPASSAPGPLAAQPAPA 325
Cdd:PHA03307 322 RESSSSSTSSSSESSRGAAVSPGPSPSRSPSP-SRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARR 400
|
250
....*....|..
gi 1001801327 326 SGPGEPTARLNP 337
Cdd:PHA03307 401 RDATGRFPAGRP 412
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
170-337 |
3.87e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 40.69 E-value: 3.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 170 RAEDRGPGRGEQLGGGAGEQLPPPRsehpaGRSDQLPTARPAYPSEYQRPEPGAW------------------PRPSQDD 231
Cdd:PHA03247 249 RGDIAAPAPPPVVGEGADRAPETAR-----GATGPPPPPEAAAPNGAAAPPDGVWgaalagaplalpappdppPPAPAGD 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 232 ----------------YGWQQQR--LGFPE-RDPYASPSSDY------RSQSRDRSPYDQQRSEYDQHRGDYDRPGADSD 286
Cdd:PHA03247 324 aeeeddedgamevvspLPRPRQHypLGFPKrRRPTWTPPSSLedlsagRHHPKRASLPTRKRRSARHAATPFARGPGGDD 403
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1001801327 287 YPRQdRRELPEPPPGSGHVhrGGPASSAPGPlaAQPAPASGPGEPTARLNP 337
Cdd:PHA03247 404 QTRP-AAPVPASVPTPAPT--PVPASAPPPP--ATPLPSAEPGSDDGPAPP 449
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
186-329 |
4.91e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 40.31 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 186 AGEQLPP-PRSEHPAGRSDQLPTARPAypseyqrpepgawPRPSQDDYGWQQQRLGFPERdpyaspssdyrsQSRDRSPY 264
Cdd:PHA03247 2548 AGDPPPPlPPAAPPAAPDRSVPPPRPA-------------PRPSEPAVTSRARRPDAPPQ------------SARPRAPV 2602
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1001801327 265 DQqrseydqhRGDYDRPGADSDYPRQDRRELPEPPPGSGHVHRGGPASSAPGPLAAQPAPASGPG 329
Cdd:PHA03247 2603 DD--------RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPG 2659
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
9-75 |
6.31e-03 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 35.72 E-value: 6.31e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1001801327 9 AAVWPRVLEKLLGE-GhgqgvEVKDERWIKRCQPLALVADTAL-LAVPNEFAKGVLEGRLAPIVSETLS 75
Cdd:pfam11638 1 EELWERVLERLRKEvG-----EQTFNTWIKPLTLVDLDDGGSLtLSVPNRFVRDWVEEHYLDRILELWQ 64
|
|
| PRK06620 |
PRK06620 |
hypothetical protein; Validated |
336-567 |
8.63e-03 |
|
hypothetical protein; Validated
Pssm-ID: 168630 Cd Length: 214 Bit Score: 38.29 E-value: 8.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 336 NPKYLFDTFVIGASNrfAHAAAVAVAEAPAKAYNP----LFIYGESGLGKTHLLHAIGHYARSlypgtrvrYVSSEEFTN 411
Cdd:PRK06620 10 SSKYHPDEFIVSSSN--DQAYNIIKNWQCGFGVNPykftLLIKGPSSSGKTYLTKIWQNLSNA--------YIIKDIFFN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001801327 412 EFInsirdgkgdsfrkrYREMDILLVDDIqfladkESTQE-EFFHTFNTLHNANKQIVLSSDRPPKQLvTLEDrLRNRFE 490
Cdd:PRK06620 80 EEI--------------LEKYNAFIIEDI------ENWQEpALLHIFNIINEKQKYLLLTSSDKSRNF-TLPD-LSSRIK 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1001801327 491 WGLITDVQPPELETrIAILRKKAVQEQ-LNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLK 567
Cdd:PRK06620 138 SVLSILLNSPDDEL-IKILIFKHFSISsVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLN 214
|
|
| |
