IS66 family insertion sequence element accessory protein TnpB [Pseudohongiella nitratireducens]
COG3436 family protein; transposase( domain architecture ID 10529723)
COG3436 family protein; transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism
List of domain hits
Name | Accession | Description | Interval | E-value | |||
TnpB_IS66 | pfam05717 | IS66 Orf2 like protein; This protein is found in insertion sequences related to IS66. The ... |
10-102 | 2.95e-32 | |||
IS66 Orf2 like protein; This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition. : Pssm-ID: 461723 Cd Length: 96 Bit Score: 108.33 E-value: 2.95e-32
|
|||||||
Name | Accession | Description | Interval | E-value | |||
TnpB_IS66 | pfam05717 | IS66 Orf2 like protein; This protein is found in insertion sequences related to IS66. The ... |
10-102 | 2.95e-32 | |||
IS66 Orf2 like protein; This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition. Pssm-ID: 461723 Cd Length: 96 Bit Score: 108.33 E-value: 2.95e-32
|
|||||||
IS66_TnpB | NF033819 | IS66 family insertion sequence element accessory protein TnpB; The IS66 family insertion ... |
7-96 | 2.06e-31 | |||
IS66 family insertion sequence element accessory protein TnpB; The IS66 family insertion sequence element encodes a DDE transposase TnpC, and two accessory proteins, TnpA and TnpB. It has been assumed that the TnpA, TnpB, and TnpC proteins are produced independently in appropriate amounts and form a complex, which acts as a transposase to promote the transposition of an IS66 family element. Pssm-ID: 411392 Cd Length: 90 Bit Score: 106.03 E-value: 2.06e-31
|
|||||||
Name | Accession | Description | Interval | E-value | |||
TnpB_IS66 | pfam05717 | IS66 Orf2 like protein; This protein is found in insertion sequences related to IS66. The ... |
10-102 | 2.95e-32 | |||
IS66 Orf2 like protein; This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition. Pssm-ID: 461723 Cd Length: 96 Bit Score: 108.33 E-value: 2.95e-32
|
|||||||
IS66_TnpB | NF033819 | IS66 family insertion sequence element accessory protein TnpB; The IS66 family insertion ... |
7-96 | 2.06e-31 | |||
IS66 family insertion sequence element accessory protein TnpB; The IS66 family insertion sequence element encodes a DDE transposase TnpC, and two accessory proteins, TnpA and TnpB. It has been assumed that the TnpA, TnpB, and TnpC proteins are produced independently in appropriate amounts and form a complex, which acts as a transposase to promote the transposition of an IS66 family element. Pssm-ID: 411392 Cd Length: 90 Bit Score: 106.03 E-value: 2.06e-31
|
|||||||
Blast search parameters | ||||
|