|
Name |
Accession |
Description |
Interval |
E-value |
| spore_lonB |
TIGR02902 |
ATP-dependent protease LonB; Members of this protein are LonB, a paralog of the ATP-dependent ... |
5-533 |
0e+00 |
|
ATP-dependent protease LonB; Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. [Protein fate, Degradation of proteins, peptides, and glycopeptides, Cellular processes, Sporulation and germination]
Pssm-ID: 131948 [Multi-domain] Cd Length: 531 Bit Score: 898.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 5 GIALFVQLFFGVIIGLYFWNLLKNQRTQKVSIDRESRKEMEQLKKMRSIKLSEPLSERVRPKSFSDIVGQEDGIKALKAA 84
Cdd:TIGR02902 1 GIFAIVQIIFLIIIGLYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 85 LCGPNPQHVIIYGPPGVGKTAAARLVLEEAKQNNKSPFKPAAVFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQ 164
Cdd:TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 165 AGIPQPKQGAVTNAHGGVLFIDEIGELHPIQMNKLLKVLEDRKVFLESAYYSEENTQIPNHIHDIFQNGLPADFRLIGAT 244
Cdd:TIGR02902 161 AGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGAT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 245 TRTPNEIPPAIRSRCLEVFFRDLEQAELAVVARKAAVKVNMKVSEPSIATLTSYVRNGREVVNMMQIAAGMAMTEDRTEI 324
Cdd:TIGR02902 241 TRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYASNGREAVNIVQLAAGIALGEGRKRI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 325 TMQDIEWVVSSSQLTPRYDKKIYADAKVGLVNGLAVHGPNSGSLLEIEVTVIHAKDK-GNINITGIVEEESIGDRGKSVR 403
Cdd:TIGR02902 321 LAEDIEWVAENGNYHPKPEIKLSSEPQIGRVNGLAVYGPNSGAVLEVEATAERAENLpGSINVTGIIEEEEIGGSGKSVR 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 404 RKSMAKGSIENVITVLRSM-GIKADDYDIHVNFPGGIPVDGPSAGIAMATGIFSAIHKIPVDHTVAMTGEISIHGNVKPI 482
Cdd:TIGR02902 401 RKSSARGSVENVLAVLRSVfGINPQNYDIHINFPGGIPVDGPSAGVAIAVAIYSAIFKCPIDNKVAMTGEISLNGLVKPV 480
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1093537117 483 GGVVPKIKAAKLAGAKTVIIPAENMQSILKTVEGIHIIPVTNLQEVFDVAL 533
Cdd:TIGR02902 481 GGVPSKIEAAKKAGAKKVIIPYENWQESFGSISGINVIPVKNIDEALNYAL 531
|
|
| spore_lon_C |
TIGR02903 |
ATP-dependent protease, Lon family; Members of this protein family resemble the widely ... |
30-533 |
1.02e-166 |
|
ATP-dependent protease, Lon family; Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. [Protein fate, Degradation of proteins, peptides, and glycopeptides, Cellular processes, Sporulation and germination]
Pssm-ID: 274344 [Multi-domain] Cd Length: 615 Bit Score: 487.01 E-value: 1.02e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 30 RTQKVSIDRESRKEMEQLKKMRSIKLSEPLSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIYGPPGVGKTAAARL 109
Cdd:TIGR02903 115 KEEKGPENSSTLKKLERLEKLEKKKLHKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARL 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 110 VLEEAKQNNKSPFKPAAVFIELDATTARFDERGIADPLIGSVHDPIYQGAGA-MGQAGIPQPKQGAVTNAHGGVLFIDEI 188
Cdd:TIGR02903 195 ALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRdLAETGVPEPKTGLVTDAHGGVLFIDEI 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 189 GELHPIQMNKLLKVLEDRKVFLESAYYSEENTQIPNHIHDIFQNGLPADFRLIGATTRTPNEIPPAIRSRCLEVFFRDLE 268
Cdd:TIGR02903 275 GELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLT 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 269 QAELAVVARKAAVKVNMKVSEPSIATLTSYVRNGREVVNMMQIAAGMAM--------TEDRTEITMQDIEWVVSSSQLTP 340
Cdd:TIGR02903 355 PEDIALIVLNAAEKINVHLAAGVEELIARYTIEGRKAVNILADVYGYALyraaeagkENDKVTITQDDVYEVIQISRLSP 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 341 RYDKKIYADAKVGLVNGLAVHGpNSGSLLEIEVTVIHAKDKGNinitGIVE-EESIGdrgksvrrkSMAKGSIENVITVL 419
Cdd:TIGR02903 435 YEKRKASPTYEVGHVFGLGVSG-FVGSVLEIEAVAFEAKEPGK----GTVRfNDTAG---------SMAKDSVFNAASVI 500
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 420 RSM-GIKADDYDIHVNFPGGIPVDGPSAGIAMATGIFSAIHKIPVDHTVAMTGEISIHGNVKPIGGVVPKIKAAKLAGAK 498
Cdd:TIGR02903 501 RKItGKDLSNYDIHVNVIGGGRIDGPSAGAAITLCMISAILGKPIRQDVAITGEISLRGKIKPVGGIFEKIYGAKQAGIK 580
|
490 500 510
....*....|....*....|....*....|....*
gi 1093537117 499 TVIIPAENMQSILKTVEGIHIIPVTNLQEVFDVAL 533
Cdd:TIGR02903 581 TVVIPEENLKDVPQGLPGIEVKFVSTIEELMRIVF 615
|
|
| Lon |
COG0466 |
ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, ... |
265-543 |
1.38e-46 |
|
ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440234 [Multi-domain] Cd Length: 785 Bit Score: 174.43 E-value: 1.38e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 265 RDLEQaELAVVARKAAVKvnmkvsepsiatltsyvrngrevvnmmqIAAGmamTEDRTEITMQDIEwvvsssQL--TPRY 342
Cdd:COG0466 546 RNLER-EIAKICRKVAKK----------------------------IAEG---KKKKVTITPKNLE------KYlgVPRF 587
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 343 DK-KIYADAKVGLVNGLAVhGPNSGSLLEIEVTVIHAKdkGNINITGiveeeSIGDrgksVrrksMaKGSIENVITVLRS 421
Cdd:COG0466 588 RYeKAEEEDQVGVVTGLAW-TEVGGDILFIEATLMPGK--GKLTLTG-----QLGD----V----M-KESAQAALSYVRS 650
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 422 ----MGIKAD---DYDIHVNFP-GGIPVDGPSAGIAMATGIFSAIHKIPVDHTVAMTGEISIHGNVKPIGGVVPKIKAAK 493
Cdd:COG0466 651 raeeLGIDPDffeKYDIHIHVPeGATPKDGPSAGITMATALVSALTGRPVRSDVAMTGEITLRGRVLPIGGLKEKLLAAH 730
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1093537117 494 LAGAKTVIIPAEN---MQSILKTV-EGIHIIPVTNLQEVFDVALLNPPTEVTAP 543
Cdd:COG0466 731 RAGIKTVILPKENekdLEEIPEEVkKGLEFHPVEHIDEVLKIALEKEPEPLPKK 784
|
|
| lon |
TIGR00763 |
endopeptidase La; This protein, the ATP-dependent serine endopeptidase La, is induced by heat ... |
96-533 |
1.90e-43 |
|
endopeptidase La; This protein, the ATP-dependent serine endopeptidase La, is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. [Protein fate, Degradation of proteins, peptides, and glycopeptides]
Pssm-ID: 273258 [Multi-domain] Cd Length: 775 Bit Score: 165.16 E-value: 1.90e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 96 YGPPGVGKTAAARLVleeAKQNNKSPFKpaavfIELDATTARFDERGIADPLIGSVHDPIYQGagaMGQAGIPQPkqgav 175
Cdd:TIGR00763 353 VGPPGVGKTSLGKSI---AKALNRKFVR-----FSLGGVRDEAEIRGHRRTYVGAMPGRIIQG---LKKAKTKNP----- 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 176 tnahggVLFIDEIGEL----HPIQMNKLLKVLEdrkvflesayySEENTQIPNHIHDIfqnglPADFR--LIGATTRTPN 249
Cdd:TIGR00763 417 ------LFLLDEIDKIgssfRGDPASALLEVLD-----------PEQNNAFSDHYLDV-----PFDLSkvIFIATANSID 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 250 EIPPAIRSRcLEVF----FRDLEQAELA-------VVARKAAVKVNMKVSEPSIATLTSY------VRN-GREVVNMMQI 311
Cdd:TIGR00763 475 TIPRPLLDR-MEVIelsgYTEEEKLEIAkkylipkALEDHGLKPDELKITDEALLLLIKYytreagVRNlERQIEKICRK 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 312 AAgMAMTEDRTEITMQDIEWVVSSSQLT-----PRYDK-KIYADAKVGLVNGLAvHGPNSGSLLEIEVTVIhaKDKGNIN 385
Cdd:TIGR00763 554 AA-VKLVEQGEKKKSEAESVVITPDNLKkylgkPVFTYeRAYEVTPPGVVMGLA-WTPMGGDTLFIETTKV--AGKGSLE 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 386 ITGiveeeSIGDrgksvrrksMAKGSIENVITVLRS----MGIKAD---DYDIHVNFP-GGIPVDGPSAGIAMATGIFSA 457
Cdd:TIGR00763 630 LTG-----QLGD---------VMKESAQIALTYVRSiaadLGISPNffeKADIHLHVPeGATPKDGPSAGITMATALLSL 695
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 458 IHKIPVDHTVAMTGEISIHGNVKPIGGVVPKIKAAKLAGAKTVIIPAEN---MQSILKTV-EGIHIIPVTNLQEVFDVAL 533
Cdd:TIGR00763 696 ATGKPVRPDVAMTGEITLRGKVLPIGGLKEKTIAAKRAGIKTIILPEKNrrdLEELPENVkEGLEIHFVKHYDEVLKKAF 775
|
|
| Lon_C |
pfam05362 |
Lon protease (S16) C-terminal proteolytic domain; The Lon serine proteases must hydrolyse ATP ... |
340-533 |
1.11e-42 |
|
Lon protease (S16) C-terminal proteolytic domain; The Lon serine proteases must hydrolyse ATP to degrade protein substrates. In Escherichia coli, these proteases are involved in turnover of intracellular proteins, including abnormal proteins following heat-shock. The active site for protease activity resides in a C-terminal domain. The Lon proteases are classified as family S16 in Merops.
Pssm-ID: 428442 [Multi-domain] Cd Length: 205 Bit Score: 151.62 E-value: 1.11e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 340 PRYD-KKIYADAKVGLVNGLAVhGPNSGSLLEIEVTVIHAKdkGNINITGiveeeSIGDrgksvrrksMAKGSIENVITV 418
Cdd:pfam05362 14 PRFRyGEAEKEDQVGVVTGLAW-TEVGGDLLTIEAVIMPGK--GKLTLTG-----QLGD---------VMKESAQAALSY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 419 LRSM----GIKAD---DYDIHVNFP-GGIPVDGPSAGIAMATGIFSAIHKIPVDHTVAMTGEISIHGNVKPIGGVVPKIK 490
Cdd:pfam05362 77 VRSRaeelGIDPDffeKKDIHIHVPeGATPKDGPSAGVTMATALVSALTGIPVRKDVAMTGEITLRGRVLPIGGLKEKLL 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1093537117 491 AAKLAGAKTVIIPAEN---MQSILKTV-EGIHIIPVTNLQEVFDVAL 533
Cdd:pfam05362 157 AAHRAGIKTVIIPKENekdLEDIPENVrEGLEIIPVEHVDEVLKHAL 203
|
|
| PRK10787 |
PRK10787 |
DNA-binding ATP-dependent protease La; Provisional |
351-537 |
1.09e-27 |
|
DNA-binding ATP-dependent protease La; Provisional
Pssm-ID: 182730 [Multi-domain] Cd Length: 784 Bit Score: 118.12 E-value: 1.09e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 351 KVGLVNGLAvHGPNSGSLLEIEVTVIHAKdkGNINITGiveeeSIGDrgksvrrksMAKGSIENVITVLRS----MGIKA 426
Cdd:PRK10787 594 RVGQVTGLA-WTEVGGDLLTIETACVPGK--GKLTYTG-----SLGE---------VMQESIQAALTVVRAraekLGINP 656
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 427 DDY---DIHVNFP-GGIPVDGPSAGIAMATGIFSAIHKIPVDHTVAMTGEISIHGNVKPIGGVVPKIKAAKLAGAKTVII 502
Cdd:PRK10787 657 DFYekrDIHVHVPeGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLI 736
|
170 180 190
....*....|....*....|....*....|....*....
gi 1093537117 503 PAENMQSILKTVEGI----HIIPVTNLQEVFDVALLNPP 537
Cdd:PRK10787 737 PFENKRDLEEIPDNViadlDIHPVKRIEEVLTLALQNEP 775
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
58-345 |
3.19e-25 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 107.86 E-value: 3.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 58 PLSERVRPKSFSDIVGQEDGI---KALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKqnnkspfkpaAVFIELDAT 134
Cdd:PRK13342 1 PLAERMRPKTLDEVVGQEHLLgpgKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD----------APFEALSAV 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 135 TArfderGIADpligsVHDpIYQGAGAMGQAGIpqpkqgavtnahGGVLFIDEIgelHpiQMNK-----LLKVLEDRKVF 209
Cdd:PRK13342 71 TS-----GVKD-----LRE-VIEEARQRRSAGR------------RTILFIDEI---H--RFNKaqqdaLLPHVEDGTIT 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 210 lesayyseentqipnhihdifqnglpadfrLIGATTRTPN-EIPPAIRSRCLeVF-FRDLEQAELAVVARKA---AVKVN 284
Cdd:PRK13342 123 ------------------------------LIGATTENPSfEVNPALLSRAQ-VFeLKPLSEEDIEQLLKRAledKERGL 171
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1093537117 285 MKVSEPSIATLTSYVrNG--REVVNMMQIAAGMamtedRTEITMQDIEWVVSSSqlTPRYDKK 345
Cdd:PRK13342 172 VELDDEALDALARLA-NGdaRRALNLLELAALG-----VDSITLELLEEALQKR--AARYDKD 226
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
56-345 |
1.22e-24 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 106.68 E-value: 1.22e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 56 SEPLSERVRPKSFSDIVGQEDGI---KALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKqnnkspfkpaAVFIELD 132
Cdd:COG2256 12 NAPLAERMRPRTLDEVVGQEHLLgpgKPLRRAIEAGRLSSMILWGPPGTGKTTLARLIANATD----------AEFVALS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 133 ATTArfderGIADpligsvhdpIYQgagAMGQAGIPQpkqgavtnAHGG--VLFIDEIgelHpiQMNK-----LLKVLED 205
Cdd:COG2256 82 AVTS-----GVKD---------IRE---VIEEARERR--------AYGRrtILFVDEI---H--RFNKaqqdaLLPHVED 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 206 RKVflesayyseentqipnhihdifqnglpadfRLIGATTRTPN-EIPPAIRSRCLeVF-FRDLEQAELAVVARKAAV-- 281
Cdd:COG2256 132 GTI------------------------------TLIGATTENPSfEVNSALLSRCR-VFvLKPLSEEDLEQLLERALAdd 180
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1093537117 282 -----KVNMKVSEPSIATLTSYVrNG--REVVNMMQIAAGMAMTEDRTEITMQDIEWVVSSSqlTPRYDKK 345
Cdd:COG2256 181 erglgGYKLELDDEALEALARLA-DGdaRRALNALELAVLSAPPDGVIEITLELVEEALQRR--ALRYDKD 248
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
57-329 |
3.96e-19 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 88.89 E-value: 3.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 57 EPL-SERVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA----KQNNKSPFkPAAVFIEL 131
Cdd:PRK12402 2 APLwTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELygdpWENNFTEF-NVADFFDQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 132 DATTARFDERgiadpligSVHdpIYQGAGAMGQAGIPQPKQgaVTNAHGGVLFIDEigelhpiqmnkllkvlEDRKVFLE 211
Cdd:PRK12402 81 GKKYLVEDPR--------FAH--FLGTDKRIRSSKIDNFKH--VLKEYASYRPLSA----------------DYKTILLD 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 212 SAyyseentqipnhiHDI---FQNGL-------PADFRLIGATTRtPNEIPPAIRSRCLEVFFRDLEQAELAVVARKAAV 281
Cdd:PRK12402 133 NA-------------EALredAQQALrrimeqySRTCRFIIATRQ-PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAE 198
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1093537117 282 KVNMKVSEPSIATLTSYVR-NGREVVNMMQIAAgmamtEDRTEITMQDI 329
Cdd:PRK12402 199 AEGVDYDDDGLELIAYYAGgDLRKAILTLQTAA-----LAAGEITMEAA 242
|
|
| COG1750 |
COG1750 |
Predicted archaeal serine protease, S18 family [General function prediction only]; |
358-529 |
4.04e-19 |
|
Predicted archaeal serine protease, S18 family [General function prediction only];
Pssm-ID: 441356 [Multi-domain] Cd Length: 213 Bit Score: 86.19 E-value: 4.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 358 LAVHGPNSGSLLEIEVTVIHaKDKGNINI--TGIVEEESIGdrgkSVRrksMAkgsienVITVLRSMGIKADDYDIHVNF 435
Cdd:COG1750 35 PAVSGTGEGVVINITVTVTY-PGSGRVYVstSPLTGPDTQA----SAR---IA------ALVASLLAGVDLSSYDVYISI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 436 PGGIP-VDGPSAGIAMATGIFSAIHKIPVDHTVAMTGEISIHGNVKPIGGVVPKIKAAKLAGAKTVIIPAenMQSILKTV 514
Cdd:COG1750 101 ESDSPiVGGPSAGGAMTVATYAALLGLPLNKSVTMTGMINPDGSIGPVGGVYEKLEAAASAGAKYFLIPK--GQAILTGY 178
|
170 180 190
....*....|....*....|....*....|.
gi 1093537117 515 E----------------GIHIIPVTNLQEVF 529
Cdd:COG1750 179 NtqvgetvdlveygkelGVKVIEVSTIADAL 209
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
72-264 |
2.61e-18 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 81.81 E-value: 2.61e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 72 VGQEDGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKQNNKSpfkpaavFIELDAttARFDERGIADPLIGSV 151
Cdd:cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAP-------FLYLNA--SDLLEGLVVAELFGHF 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 152 HDpiyqgagamgqagipQPKQGAVTNAHGGVLFIDEIGELHPIQMNKLLKVLEDRKVFLESayyseentqipnhihdifq 231
Cdd:cd00009 72 LV---------------RLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRID------------------- 117
|
170 180 190
....*....|....*....|....*....|....
gi 1093537117 232 nglPADFRLIGATTR-TPNEIPPAIRSRCLEVFF 264
Cdd:cd00009 118 ---RENVRVIGATNRpLLGDLDRALYDRLDIRIV 148
|
|
| SdrC |
COG3480 |
Predicted secreted protein YlbL, contains PDZ domain [Signal transduction mechanisms]; |
421-527 |
8.07e-14 |
|
Predicted secreted protein YlbL, contains PDZ domain [Signal transduction mechanisms];
Pssm-ID: 442703 [Multi-domain] Cd Length: 344 Bit Score: 72.92 E-value: 8.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 421 SMGIKAD-DYDIHVNFPGgipVDGPSAGIAMATGIFSAIhkIPVD----HTVAMTGEISIHGNVKPIGGVVPKIKAAKLA 495
Cdd:COG3480 220 SLVTKVDfPFDVDIDLGD---IGGPSAGLMFALGIYDQL--TPGDltggKKIAGTGTIDADGTVGPIGGIDQKVVAARRA 294
|
90 100 110
....*....|....*....|....*....|...
gi 1093537117 496 GAKTVIIPAENMQSILKTV-EGIHIIPVTNLQE 527
Cdd:COG3480 295 GATIFLAPASNCAEAVGTIpTGLKVVPVDTLDD 327
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
56-312 |
2.60e-13 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 72.78 E-value: 2.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 56 SEPLSERVRPKSFSDIVGQeDGIKA----LKAALCGPNPQHVIIYGPPGVGKTAAARLVleeAKQNNkspfkpaAVFIEL 131
Cdd:PRK13341 15 EAPLADRLRPRTLEEFVGQ-DHILGegrlLRRAIKADRVGSLILYGPPGVGKTTLARII---ANHTR-------AHFSSL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 132 DATTArfderGIADplIGSVHDPIYQGAGAMGQAGIpqpkqgavtnahggvLFIDEIGELHPIQMNKLLKVLEdrkvfle 211
Cdd:PRK13341 84 NAVLA-----GVKD--LRAEVDRAKERLERHGKRTI---------------LFIDEVHRFNKAQQDALLPWVE------- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 212 sayyseentqipnhihdifqNGlpaDFRLIGATTRTPN-EIPPAIRSRCLEVFFRDLEQAELAVVARKA-------AVKV 283
Cdd:PRK13341 135 --------------------NG---TITLIGATTENPYfEVNKALVSRSRLFRLKSLSDEDLHQLLKRAlqdkergYGDR 191
|
250 260 270
....*....|....*....|....*....|.
gi 1093537117 284 NMKVSEPSIATLTSyVRNG--REVVNMMQIA 312
Cdd:PRK13341 192 KVDLEPEAEKHLVD-VANGdaRSLLNALELA 221
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
71-267 |
4.73e-13 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 67.04 E-value: 4.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 71 IVGQEDGIKALK--AALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKQNNKsPFKP---AAvfieldattarfdergIAD 145
Cdd:pfam00158 1 IIGESPAMQEVLeqAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADG-PFVAvncAA----------------IPE 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 146 PLIGSV---HDPiyqGA--GAMGQagipqpKQGAVTNAHGGVLFIDEIGELhPIQMN-KLLKVLEDRKVflesayysE-- 217
Cdd:pfam00158 64 ELLESElfgHEK---GAftGADSD------RKGLFELADGGTLFLDEIGEL-PLELQaKLLRVLQEGEF--------Erv 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1093537117 218 -ENTQIpnhihdifqnglPADFRLIGATTRTPNEippairsRCLEVFFR-DL 267
Cdd:pfam00158 126 gGTKPI------------KVDVRIIAATNRDLEE-------AVAEGRFReDL 158
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
57-143 |
3.60e-12 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 67.59 E-value: 3.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 57 EPLSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIYGPPGVGKTAAArLVL------EEAKQNnkspfkpaavFIE 130
Cdd:PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAA-LALarelygEDWREN----------FLE 73
|
90
....*....|...
gi 1093537117 131 LDATtarfDERGI 143
Cdd:PRK00440 74 LNAS----DERGI 82
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
74-314 |
1.41e-11 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 65.38 E-value: 1.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 74 QEDGIKALKAAL-CGPNPQHVIIYGPPGVGKTAAA----RLVLEEAKQNNKSPFKPAAV---------FIELDATTARfD 139
Cdd:COG0470 1 QEEAWEQLLAAAeSGRLPHALLLHGPPGIGKTTLAlalaRDLLCENPEGGKACGQCHSRlmaagnhpdLLELNPEEKS-D 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 140 ERGIadpligsvhDPIYQGAGAMGQAgipqpkqgavtnAHGG---VLFIDEIGELHPIQMNKLLKVLEDrkvflesayys 216
Cdd:COG0470 80 QIGI---------DQIRELGEFLSLT------------PLEGgrkVVIIDEADAMNEAAANALLKTLEE----------- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 217 eentqipnhihdifqngLPADFRLIgATTRTPNEIPPAIRSRCLEVFFRDLEQAELAVVARKAavkvnmKVSEPSIATLT 296
Cdd:COG0470 128 -----------------PPKNTPFI-LIANDPSRLLPTIRSRCQVIRFRPPSEEEALAWLREE------GVDEDALEAIL 183
|
250
....*....|....*....
gi 1093537117 297 SYVRNG-REVVNMMQIAAG 314
Cdd:COG0470 184 RLAGGDpRAAINLLQALAG 202
|
|
| PRK09862 |
PRK09862 |
ATP-dependent protease; |
55-249 |
1.53e-11 |
|
ATP-dependent protease;
Pssm-ID: 182120 [Multi-domain] Cd Length: 506 Bit Score: 66.54 E-value: 1.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 55 LSEPLSERV----RPKSFSDIVGQEDGIKALKAALCGPNpqHVIIYGPPGVGKTA-AARLVLEEAKQNNKSPFKPAAVF- 128
Cdd:PRK09862 173 LERPKPTDAvsraLQHDLSDVIGQEQGKRGLEITAAGGH--NLLLIGPPGTGKTMlASRINGLLPDLSNEEALESAAILs 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 129 -IELDATTARFDERGIADPligsvHDPIYQGAgAMGQAGIPQPkqGAVTNAHGGVLFIDEIGELHPIQMNKLLKVLEDRK 207
Cdd:PRK09862 251 lVNAESVQKQWRQRPFRSP-----HHSASLTA-MVGGGAIPGP--GEISLAHNGVLFLDELPEFERRTLDALREPIESGQ 322
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1093537117 208 VFLesayySEENTQIpnhihdifqnGLPADFRLIGATTRTPN 249
Cdd:PRK09862 323 IHL-----SRTRAKI----------TYPARFQLVAAMNPSPT 349
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
52-339 |
1.96e-11 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 66.09 E-value: 1.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 52 SIKLSEPLSERVRPKSFSDIVGQEDGIKALKAALCGP-------------NPQHVIIYGPPGVGKTAAARLVLEEAKQNn 118
Cdd:COG0464 140 DIGGLEEELLELREAILDDLGGLEEVKEELRELVALPlkrpelreeyglpPPRGLLLYGPPGTGKTLLARALAGELGLP- 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 119 kspfkpaavFIELDATTarfdergIADPLIGS----VHDPIYQgagAMGQAGipqpkqgavtnahgGVLFIDEIGELHP- 193
Cdd:COG0464 219 ---------LIEVDLSD-------LVSKYVGEteknLREVFDK---ARGLAP--------------CVLFIDEADALAGk 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 194 ----------IQMNKLLKVLEDRKvflesayyseentqipnhiHDIFqnglpadfrLIGATTRtPNEIPPAIRSRC-LEV 262
Cdd:COG0464 266 rgevgdgvgrRVVNTLLTEMEELR-------------------SDVV---------VIAATNR-PDLLDPALLRRFdEII 316
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1093537117 263 FFRDLEQAELAVVARKAAVKVNMK--VSEPSIATLTSYVrNGREVVNMMQIAAGMAMTEDRTEITMQDIEWVVSSSQLT 339
Cdd:COG0464 317 FFPLPDAEERLEIFRIHLRKRPLDedVDLEELAEATEGL-SGADIRNVVRRAALQALRLGREPVTTEDLLEALEREDIF 394
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
60-246 |
3.35e-11 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 65.69 E-value: 3.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 60 SERVRPKSFSDIVGQEDGIKAL--KAALCGPNPQHVIIYGPPGVGKTAAARLVLEEakqnnkSPFKPAAvFIELDAttar 137
Cdd:COG3284 312 AGAPAPAALAALAGGDPAMRRAlrRARRLADRDIPVLILGETGTGKELFARAIHAA------SPRADGP-FVAVNC---- 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 138 fdeRGIADPLIGSV---HDP-IYQGAGAMGQAG-IPQpkqgavtnAHGGVLFIDEIGELHPIQMNKLLKVLEDRKVfles 212
Cdd:COG3284 381 ---AAIPEELIESElfgYEPgAFTGARRKGRPGkIEQ--------ADGGTLFLDEIGDMPLALQARLLRVLQEREV---- 445
|
170 180 190
....*....|....*....|....*....|....
gi 1093537117 213 aYYSEENTQIpnhihdifqnglPADFRLIGATTR 246
Cdd:COG3284 446 -TPLGGTKPI------------PVDVRLIAATHR 466
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
59-273 |
3.91e-11 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 65.89 E-value: 3.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 59 LSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHV-IIYGPPGVGKTAAARLVLEEAKQNNKSPFKPAAV---------- 127
Cdd:PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAyLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVcqsctqidag 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 128 ----FIELDATTarfdERGIadpligsvhDPIYQgagamgqagIPQPKQGAVTNAHGGVLFIDEIGELHPIQMNKLLKVL 203
Cdd:PRK08691 86 ryvdLLEIDAAS----NTGI---------DNIRE---------VLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTL 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 204 EDRkvflesayyseentqiPNHIhdifqnglpadfRLIGATTrTPNEIPPAIRSRCLEVFFRDLEQAELA 273
Cdd:PRK08691 144 EEP----------------PEHV------------KFILATT-DPHKVPVTVLSRCLQFVLRNMTAQQVA 184
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
57-295 |
6.19e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 64.84 E-value: 6.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 57 EPLSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIY-GPPGVGKTAAARLVLEEAKQNNKSPFKPA---------- 125
Cdd:PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFaGPRGTGKTTIARILAKVLNCLNPQEGEPCgkcencveid 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 126 -AVF---IELDATTarfdERGIADplIGSVHDPI-YqgagamgqagipQPKQGAVTnahggVLFIDEIGELHPIQMNKLL 200
Cdd:PRK14953 84 kGSFpdlIEIDAAS----NRGIDD--IRALRDAVsY------------TPIKGKYK-----VYIIDEAHMLTKEAFNALL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 201 KVLED---RKVFlesayyseentqipnhihdifqnglpadfrlIGATTRTpNEIPPAIRSRCLEVFFRDLEQAELAVVAR 277
Cdd:PRK14953 141 KTLEEpppRTIF-------------------------------ILCTTEY-DKIPPTILSRCQRFIFSKPTKEQIKEYLK 188
|
250
....*....|....*...
gi 1093537117 278 KAAVKVNMKVSEPSIATL 295
Cdd:PRK14953 189 RICNEEKIEYEEKALDLL 206
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
61-330 |
1.30e-10 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 63.44 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 61 ERVRPKSFSDIVGQEDGIKAL--KAALCGPNPQHVIIYGPPGVGKTAAARLVLEeakqnnKSPFKpAAVFIELDATtarf 138
Cdd:COG2204 123 LRRENAEDSGLIGRSPAMQEVrrLIEKVAPSDATVLITGESGTGKELVARAIHR------LSPRA-DGPFVAVNCA---- 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 139 derGIADPLIGSVHDPIYQGA--GAMGQagipqpKQGAVTNAHGGVLFIDEIGELHPIQMNKLLKVLEDRKVFLESAyys 216
Cdd:COG2204 192 ---AIPEELLESELFGHEKGAftGAVAR------RIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGG--- 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 217 eeNTQIpnhihdifqnglPADFRLIGATTRTP-----------------NEIP---PAIRSRCLEVFFrdLEQAELAVVA 276
Cdd:COG2204 260 --NKPI------------PVDVRVIAATNRDLeelveegrfredlyyrlNVFPielPPLRERREDIPL--LARHFLARFA 323
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1093537117 277 RKAAVKVnmKVSEPSIATLTSYV--RNGREVVNMMQIAAGMAmteDRTEITMQDIE 330
Cdd:COG2204 324 AELGKPV--KLSPEALEALLAYDwpGNVRELENVIERAVILA---DGEVITAEDLP 374
|
|
| ruvB |
TIGR00635 |
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions ... |
66-326 |
1.55e-10 |
|
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129721 [Multi-domain] Cd Length: 305 Bit Score: 62.32 E-value: 1.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 66 KSFSDIVGQEDGIKALKAALC-----GPNPQHVIIYGPPGVGKTAAARLVLEEAKQNNKSPFKPAavfieldattarfde 140
Cdd:TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEaakmrQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPA--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 141 rgiadpligsvhdpiyqgagamgqagIPQPKQ--GAVTN-AHGGVLFIDEIGELHPIQMNKLLKVLEDRKVflesayyse 217
Cdd:TIGR00635 66 --------------------------LEKPGDlaAILTNlEEGDVLFIDEIHRLSPAVEELLYPAMEDFRL--------- 110
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 218 entqipnhihDIFQNGLPAD---------FRLIGATTRTPNEIPPaIRSRCLEVFFRDL-EQAELAVVARKAAVKVNMKV 287
Cdd:TIGR00635 111 ----------DIVIGKGPSArsvrldlppFTLVGATTRAGMLTSP-LRDRFGIILRLEFyTVEELAEIVSRSAGLLNVEI 179
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1093537117 288 SEPSIATLTSYVRNG--------REVVNMMQIAAGMAMTEDRTEITM 326
Cdd:TIGR00635 180 EPEAALEIARRSRGTprianrllRRVRDFAQVRGQKIINRDIALKAL 226
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
68-244 |
1.57e-10 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 61.01 E-value: 1.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 68 FSDIVGQEDGIKALKAALCGPNpqHVIIYGPPGVGKTA-AARL-----------VLEEAKQNNKSpfkpaavfiELDATT 135
Cdd:pfam01078 2 LADVKGQEQAKRALEIAAAGGH--NLLMIGPPGSGKTMlAKRLpgilpplteaeALEVTAIHSVA---------GLGGDG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 136 ARFDERGIADP--------LIGsvhdpiyqgagamgqaGIPQPKQGAVTNAHGGVLFIDEIGELHPIQMNKLLKVLEDRK 207
Cdd:pfam01078 71 GLIRRRPFRAPhhsasaaaLVG----------------GGSIPRPGEISLAHNGVLFLDELPEFKRRVLESLRQPLEDGE 134
|
170 180 190
....*....|....*....|....*....|....*..
gi 1093537117 208 VFLESAYYSEEntqipnhihdifqngLPADFRLIGAT 244
Cdd:pfam01078 135 ITISRARAKVT---------------FPARFQLVAAM 156
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
93-267 |
3.13e-10 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 57.99 E-value: 3.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 93 VIIYGPPGVGKTAAARLVLEEAKQNnkspfkpaavFIELDATTARFDERGIADPLIgsvhdpiyqgAGAMGQAGIPQPKq 172
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAP----------FIEISGSELVSKYVGESEKRL----------RELFEAAKKLAPC- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 173 gavtnahggVLFIDEIGELHPIQ-----------MNKLLKVLEDrkvflesayyseentqipnhihdiFQNgLPADFRLI 241
Cdd:pfam00004 60 ---------VIFIDEIDALAGSRgsggdsesrrvVNQLLTELDG------------------------FTS-SNSKVIVI 105
|
170 180
....*....|....*....|....*.
gi 1093537117 242 GATTRtPNEIPPAIRSRCLEVFFRDL 267
Cdd:pfam00004 106 AATNR-PDKLDPALLGRFDRIIEFPL 130
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
90-258 |
8.12e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.38 E-value: 8.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 90 PQHVIIYGPPGVGKTAAARLVLEEAKQNNKSpfkpaavFIELDATTARfdERGIADPLIGSVHDPIYQGAGAMGQAGIPQ 169
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGG-------VIYIDGEDIL--EEVLDQLLLIIVGGKKASGSGELRLRLALA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 170 pkqgAVTNAHGGVLFIDEIGELHPIQMNKLLKVLEDRKVflesayyseentqipnhihdIFQNGLPADFRLIGATTRTPN 249
Cdd:smart00382 73 ----LARKLKPDVLILDEITSLLDAEQEALLLLLEELRL--------------------LLLLKSEKNLTVILTTNDEKD 128
|
....*....
gi 1093537117 250 EIPPAIRSR 258
Cdd:smart00382 129 LGPALLRRR 137
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
68-334 |
1.41e-09 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 58.74 E-value: 1.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 68 FSDIVGQEDGIKALKAAL-----------CGPNP-QHVIIYGPPGVGKTAAARLVLEEAKqnnkspfKPaavFIELDATT 135
Cdd:COG1223 1 LDDVVGQEEAKKKLKLIIkelrrrenlrkFGLWPpRKILFYGPPGTGKTMLAEALAGELK-------LP---LLTVRLDS 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 136 arfdergiadpLIGS--------VHDpIYQGAgamgqagipqpkqgavtNAHGGVLFIDEI-------------GELHPI 194
Cdd:COG1223 71 -----------LIGSylgetarnLRK-LFDFA-----------------RRAPCVIFFDEFdaiakdrgdqndvGEVKRV 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 195 qMNKLLKVLEdrkvflesayyseentqipnhihdifqnGLPADFRLIGATTRtPNEIPPAIRSRC---LEVFFRDLEQAE 271
Cdd:COG1223 122 -VNALLQELD----------------------------GLPSGSVVIAATNH-PELLDSALWRRFdevIEFPLPDKEERK 171
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1093537117 272 LAVVARKAAVKVNMKVSEPSIATLTsYVRNGREVVNMMQIAAGMAMTEDRTEITMQDIEWVVS 334
Cdd:COG1223 172 EILELNLKKFPLPFELDLKKLAKKL-EGLSGADIEKVLKTALKKAILEDREKVTKEDLEEALK 233
|
|
| ChlI |
pfam13541 |
Subunit ChlI of Mg-chelatase; |
408-506 |
1.60e-09 |
|
Subunit ChlI of Mg-chelatase;
Pssm-ID: 433293 [Multi-domain] Cd Length: 121 Bit Score: 55.92 E-value: 1.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 408 AKGSIENVITVLRSMGIKADDYDIHVN-FPGGIPVDGPSAGIAMATGIFSAIHKIPVDHTVAMTGEISIHGNVKPIGGVV 486
Cdd:pfam13541 22 VKESKERVRAALKNSGFEFPPKRITVNlAPADLKKEGSSFDLPIAIGILAAQGQIPVLEETIFLGELSLDGSLRPVRGAL 101
|
90 100
....*....|....*....|
gi 1093537117 487 PKIKAAKLAGAKTVIIPAEN 506
Cdd:pfam13541 102 PIALAARKHGFRGLIVPKEN 121
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
59-323 |
2.59e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 59.47 E-value: 2.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 59 LSERVRPKSFSDIVGQEDGIKALKAAL-CGPNPQHVIIYGPPGVGKTAAARLVLEEAKQNNKSPfKPAAV---------- 127
Cdd:PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALrQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDP-KPCGEcesclavrrg 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 128 ----FIELDATTArfdergiadpliGSVHDpIYQGAGAMGQAGIPQPKQgavtnahggVLFIDEIGELHPIQMNKLLKVL 203
Cdd:PRK14963 83 ahpdVLEIDAASN------------NSVED-VRDLREKVLLAPLRGGRK---------VYILDEAHMMSKSAFNALLKTL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 204 EDRkvflesayyseentqiPNHIhdIFqnglpadfrlIGATTRtPNEIPPAIRSRCLEVFFRDLEQAELAVVARKAAVKV 283
Cdd:PRK14963 141 EEP----------------PEHV--IF----------ILATTE-PEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAE 191
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1093537117 284 NMKVSEPSIATLTSY----VRNGREVVNMMqIAAGMAMTEDRTE 323
Cdd:PRK14963 192 GREAEPEALQLVARLadgaMRDAESLLERL-LALGTPVTRKQVE 234
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
92-259 |
4.45e-09 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 54.99 E-value: 4.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 92 HVIIYGPPGVGKTAAARLVLE-------EAKQNNKSpfkpaavfieldaTTAR--FDERGIaDPLIGSVHDpiyqgagam 162
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAalsnrpvFYVQLTRD-------------TTEEdlFGRRNI-DPGGASWVD--------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 163 gqagipqpkqGAVTNA--HGGVLFIDEIGELHPIQMNKLLKVLEDRKvflesaYYSEENTQIpnhihdifQNGLPADFRL 240
Cdd:pfam07728 58 ----------GPLVRAarEGEIAVLDEINRANPDVLNSLLSLLDERR------LLLPDGGEL--------VKAAPDGFRL 113
|
170 180
....*....|....*....|..
gi 1093537117 241 IGATTRTP---NEIPPAIRSRC 259
Cdd:pfam07728 114 IATMNPLDrglNELSPALRSRF 135
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
63-247 |
5.03e-09 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 55.20 E-value: 5.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 63 VRPKSFSDIVGQEDGIKAL----KAALC-GPNPQHVIIYGPPGVGKTAAARLVLEEAKQNNKSpfkpaavfieldaTTAr 137
Cdd:pfam05496 1 LRPRTLDEYIGQEKVKENLkifiEAAKQrGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRI-------------TSG- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 138 fdergiadpligsvhdPIYQGAGAMgqAGIpqpkqgaVTN-AHGGVLFIDEIGELHPIQMNKLLKVLEDRKVFL-----E 211
Cdd:pfam05496 67 ----------------PAIERPGDL--AAI-------LTNlEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIvigkgP 121
|
170 180 190
....*....|....*....|....*....|....*.
gi 1093537117 212 SAyyseENTQIPnhihdifqngLPAdFRLIGATTRT 247
Cdd:pfam05496 122 SA----RSIRLD----------LPP-FTLVGATTRA 142
|
|
| LonB |
COG1067 |
Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] ... |
441-524 |
5.93e-09 |
|
Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440686 [Multi-domain] Cd Length: 742 Bit Score: 58.80 E-value: 5.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 441 VDGPSAGIAMATGIFSAIHKIPVDHTVAMTGEISIHGNVKPIGGVVPKI-------KAAKLAGAKTVIIPAENM------ 507
Cdd:COG1067 591 VDGDSASSAELYALLSALSGVPIRQDIAVTGSVNQHGEVQPIGGVNEKIegffdvcKARGLTGKQGVIIPAANVknlmlr 670
|
90
....*....|....*....
gi 1093537117 508 QSILKTVE-GI-HIIPVTN 524
Cdd:COG1067 671 DEVVEAVKaGQfHIYAVEH 689
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
42-208 |
1.02e-08 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 57.47 E-value: 1.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 42 KEMEQLKKM-RSIKLSEPLSERVRPKSFSDIVGQEDGIKALK--AALCGPNPQHVIIYGPPGVGKTAAARLVleeakqNN 118
Cdd:COG3829 110 RDITELKRLeRKLREEELERGLSAKYTFDDIIGKSPAMKELLelAKRVAKSDSTVLILGESGTGKELFARAI------HN 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 119 KSP--FKPaavFIELDATtarfderGIADPLI-----GSVhdpiyQGA--GAmgqagIPQPKQGAVTNAHGGVLFIDEIG 189
Cdd:COG3829 184 ASPrrDGP---FVAVNCA-------AIPENLLeselfGYE-----KGAftGA-----KKGGKPGLFELADGGTLFLDEIG 243
|
170 180
....*....|....*....|
gi 1093537117 190 ELhPIQM-NKLLKVLEDRKV 208
Cdd:COG3829 244 EM-PLSLqAKLLRVLQEKEV 262
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
57-292 |
2.37e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 56.70 E-value: 2.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 57 EPLSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIY-GPPGVGKTAAARLVLEEAKQNNKSPFKPAAV-------- 127
Cdd:PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFaGPRGTGKTTVARILAKSLNCENRKGVEPCNEcracrsid 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 128 ------FIELDATTarfdERGIadpligsvhDPIYQGAGAMGQagipQPKQGAVTnahggVLFIDEIGELHPIQMNKLLK 201
Cdd:PRK14962 82 egtfmdVIELDAAS----NRGI---------DEIRKIRDAVGY----RPMEGKYK-----VYIIDEVHMLTKEAFNALLK 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 202 VLEDRkvflesayyseentqiPNHIhdIFqnglpadfrlIGATTrTPNEIPPAIRSRCLEVFFRDLEQAELAVVARKAAV 281
Cdd:PRK14962 140 TLEEP----------------PSHV--VF----------VLATT-NLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAE 190
|
250
....*....|.
gi 1093537117 282 KVNMKVSEPSI 292
Cdd:PRK14962 191 AEGIEIDREAL 201
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
57-286 |
2.74e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 56.49 E-value: 2.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 57 EPLSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHV-IIYGPPGVGKTAAARLVLEEAKQNNKSPFKPAAvfielDATT 135
Cdd:PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAyIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN-----ECTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 136 ARFDERGIADPLIGsvhdpiYQGAGAMGQAGIPQPKQGAVTNAHGG---VLFIDEIGELHPIQMNKLLKVLEDrkvfles 212
Cdd:PRK14956 81 CLEITKGISSDVLE------IDAASNRGIENIRELRDNVKFAPMGGkykVYIIDEVHMLTDQSFNALLKTLEE------- 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1093537117 213 ayyseentqiPnhihdifqnglPADFRLIGATTRTpNEIPPAIRSRCLEVFFRDLEQAELAVVARKAAVKVNMK 286
Cdd:PRK14956 148 ----------P-----------PAHIVFILATTEF-HKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ 199
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
54-205 |
5.28e-08 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 52.95 E-value: 5.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 54 KLSEPLSERVrpksfsdiVGQEDGIKALKAALCGP-----NPQHVII----YGPPGVGKTAAARLVLEEAKQNNKSpfkp 124
Cdd:cd19499 4 NLEERLHERV--------VGQDEAVKAVSDAIRRAraglsDPNRPIGsflfLGPTGVGKTELAKALAELLFGDEDN---- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 125 aavFIELDATTarFDERGIADPLIGSvhDPIYQGAGAMGQAgipqpkQGAVTNAHGGVLFIDEIGELHPIQMNKLLKVLE 204
Cdd:cd19499 72 ---LIRIDMSE--YMEKHSVSRLIGA--PPGYVGYTEGGQL------TEAVRRKPYSVVLLDEIEKAHPDVQNLLLQVLD 138
|
.
gi 1093537117 205 D 205
Cdd:cd19499 139 D 139
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
29-330 |
6.12e-08 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 54.63 E-value: 6.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 29 QRTQKVSIDRESRKEMEQLKKMRSIKLSEPLSERVRPKS----FSDIVGQEDGIKALKAALCGP-------------NPQ 91
Cdd:COG1222 34 QPVKALELLEEAPALLLNDANLTQKRLGTPRGTAVPAESpdvtFDDIGGLDEQIEEIREAVELPlknpelfrkygiePPK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 92 HVIIYGPPGVGKTAAARLVLEEAKqnnkspfkpaAVFIELdattaRFDErgIADPLIG----SVHDpIYQGAGAMGQAgi 167
Cdd:COG1222 114 GVLLYGPPGTGKTLLAKAVAGELG----------APFIRV-----RGSE--LVSKYIGegarNVRE-VFELAREKAPS-- 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 168 pqpkqgavtnahggVLFIDEI----------GELHPIQ--MNKLLKVLEDrkvflesayYSEENtqipnhihdifqnglp 235
Cdd:COG1222 174 --------------IIFIDEIdaiaarrtddGTSGEVQrtVNQLLAELDG---------FESRG---------------- 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 236 aDFRLIGATTRtPNEIPPAIR--SRclevFFRDLEQAELAVVARKAAVKV---NMKVSEP----SIATLTSYVrNGREVV 306
Cdd:COG1222 215 -DVLIIAATNR-PDLLDPALLrpGR----FDRVIEVPLPDEEAREEILKIhlrDMPLADDvdldKLAKLTEGF-SGADLK 287
|
330 340
....*....|....*....|....
gi 1093537117 307 NMMQIAAGMAMTEDRTEITMQDIE 330
Cdd:COG1222 288 AIVTEAGMFAIREGRDTVTMEDLE 311
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
24-299 |
6.26e-08 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 55.50 E-value: 6.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 24 NLLKNQRTQKVS------IDRESRKEMEQLKKMRSIKLSEPLSERVRPK----SFSDIVGQEDG----IKALKAA-LCGP 88
Cdd:COG1221 49 ELVKEGKLIKINgrpvlfLDKEAFEEQFGTKLKSEYSFVELLAEKENNEeeedPFDNLIGANGSlknaIEQAKAAiLYPP 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 89 NPQHVIIYGPPGVGKTAAARLVLEEAKQNNKspFKPAAVFIELDAttarfdergiAD----P------LIGSVhdpiyQG 158
Cdd:COG1221 129 KGLHTLILGPTGVGKSFFAELMYEYAIEIGV--LPEDAPFVVFNC----------ADyannPqllmsqLFGYV-----KG 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 159 A--GAMgqagipQPKQGAVTNAHGGVLFIDEIGELHPIQMNKLLkVLEDRKVF--L-ESAyyseentqipnhihdifqNG 233
Cdd:COG1221 192 AftGAD------KDKEGLIEKADGGILFLDEVHRLPPEGQEMLF-TFMDKGIYrrLgETE------------------KT 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 234 LPADFRLIGATTRTPNE---------IP-----PAIRSRCLE-------VFFrdleQAElavvARKaaVKVNMKVSEPSI 292
Cdd:COG1221 247 RKANVRIIFATTEDPESsllktflrrIPmviklPSLEERSLEerlelikHFF----KEE----AKR--LNKPIKVSKEVL 316
|
....*..
gi 1093537117 293 ATLTSYV 299
Cdd:COG1221 317 KALLLYD 323
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
65-283 |
7.32e-08 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 54.43 E-value: 7.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 65 PKSFSDIVGQEDGIKALKAALcgpNPQHV----IIYGPPGVGKTAAARLVleeAKQ---NNKSPFKPAAV---------- 127
Cdd:COG2812 6 PQTFDDVVGQEHVVRTLKNAL---ASGRLahayLFTGPRGVGKTTLARIL---AKAlncENGPTGEPCGEcescraiaag 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 128 ----FIELDATTARfdeRGIAD--PLIGSVHDPIYQGagamgqagipQPKqgavtnahggVLFIDEIGELHPIQMNKLLK 201
Cdd:COG2812 80 shpdVIEIDAEASN---IGVDDirELIEKVSYAPVEG----------RYK----------VYIIDEAHMLTTEAFNALLK 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 202 VLEdrkvflESayyseentqiPNHIHDIFqnglpadfrligATTRtPNEIPPAIRSRCLEVFFRDLEQAE----LAVVAR 277
Cdd:COG2812 137 TLE------EP----------PPHVVFIL------------ATTE-PQKLLPTILSRCQRFDFRRLPPEEiaehLAKIAE 187
|
....*.
gi 1093537117 278 KAAVKV 283
Cdd:COG2812 188 REGIEI 193
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
61-107 |
8.32e-08 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 54.93 E-value: 8.32e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1093537117 61 ERVRPKSFSDIVGQEDGIKALK----AALCGPNPQHVIIYGPPGVGKTAAA 107
Cdd:PRK04195 6 EKYRPKTLSDVVGNEKAKEQLRewieSWLKGKPKKALLLYGPPGVGKTSLA 56
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
64-289 |
1.70e-07 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 53.21 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 64 RPKSFSDIVGQEDGIKALKAALC-----GPNPQHVIIYGPPGVGKTAAARLVLEEAKQNNKSpfkpaavfieldaTTArf 138
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEaakkrGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRI-------------TSG-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 139 dergiadPLIgsvhdpiyQGAGAMgqAGIpqpkqgaVTN-AHGGVLFIDEIGELHPIQMNKLLKVLEDRKVflesayyse 217
Cdd:PRK00080 85 -------PAL--------EKPGDL--AAI-------LTNlEEGDVLFIDEIHRLSPVVEEILYPAMEDFRL--------- 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 218 eNTQI---PN-HIHDIfqnGLPAdFRLIGATTRtPNEIPPAIRSRclevF---FRdLE---QAELAVVARKAAVKVNMKV 287
Cdd:PRK00080 132 -DIMIgkgPAaRSIRL---DLPP-FTLIGATTR-AGLLTSPLRDR----FgivQR-LEfytVEELEKIVKRSARILGVEI 200
|
..
gi 1093537117 288 SE 289
Cdd:PRK00080 201 DE 202
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
59-261 |
1.73e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 54.11 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 59 LSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIY-GPPGVGKTAAARLVLEE-----AKQNNKSPFKPAAV----- 127
Cdd:PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFtGTRGVGKTTLSRILAKSlnctgADGEGGITAQPCGQcract 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 128 ---------FIELDATTAR-FDErgIADPLIGSVHDPiyqgagamgqagipqpkqgavTNAHGGVLFIDEIGELHPIQMN 197
Cdd:PRK12323 86 eidagrfvdYIEMDAASNRgVDE--MAQLLDKAVYAP---------------------TAGRFKVYMIDEVHMLTNHAFN 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1093537117 198 KLLKVLEDRkvflesayyseentqiPNHIhdifqnglpadfRLIGATTrTPNEIPPAIRSRCLE 261
Cdd:PRK12323 143 AMLKTLEEP----------------PEHV------------KFILATT-DPQKIPVTVLSRCLQ 177
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
57-116 |
1.78e-07 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 53.31 E-value: 1.78e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1093537117 57 EPLSERVRPksfSDIVGQEDGIK----ALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKQ 116
Cdd:COG1474 17 EVLSPDYVP---DRLPHREEEIEelasALRPALRGERPSNVLIYGPTGTGKTAVAKYVLEELEE 77
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
67-265 |
3.47e-07 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 52.73 E-value: 3.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 67 SFSDIVGQEDGIKAL--KAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKQNNKSpfkpaavFIELDAttARFDERGIA 144
Cdd:PRK10365 137 SQFGMVGKSPAMQHLlsEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKP-------LVTLNC--AALNESLLE 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 145 DPLIGsvHDpiyqgAGAMgqAGIPQPKQGAVTNAHGGVLFIDEIGELHPIQMNKLLKVLEDRKVflesayyseentqipn 224
Cdd:PRK10365 208 SELFG--HE-----KGAF--TGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREV---------------- 262
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1093537117 225 hiHDIFQN-GLPADFRLIGATTRTPNEIPPAIRSRcLEVFFR 265
Cdd:PRK10365 263 --QRVGSNqTISVDVRLIAATHRDLAAEVNAGRFR-QDLYYR 301
|
|
| YifB |
COG0606 |
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational ... |
68-208 |
4.08e-07 |
|
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440371 [Multi-domain] Cd Length: 502 Bit Score: 52.74 E-value: 4.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 68 FSDIVGQEDGIKALKAALCGpnpQH-VIIYGPPGVGKT-AAARLV-------LEEAkqnnkspfkpaavfIEldaTTArf 138
Cdd:COG0606 191 LADVKGQEQAKRALEIAAAG---GHnLLMIGPPGSGKTmLARRLPgilppltEEEA--------------LE---VTA-- 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 139 dergiadplIGSVHDPIYQGAGAMGQ------------AGI------PQPkqGAVTNAHGGVLFIDEIGELHPiqmnKLL 200
Cdd:COG0606 249 ---------IHSVAGLLPPDGGLIRRrpfraphhtasaAALvgggsiPRP--GEISLAHNGVLFLDELPEFSR----RVL 313
|
170
....*....|..
gi 1093537117 201 KVL----EDRKV 208
Cdd:COG0606 314 EALrqplEDGEV 325
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
59-280 |
5.60e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 52.44 E-value: 5.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 59 LSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIY-GPPGVGKTAAARLVleeAKQNNKS---PFKPAAV------- 127
Cdd:PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFtGTRGVGKTTLARIL---AKSLNCEtgvTATPCGVcsaclei 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 128 -------FIELDATTARfdergiadpligsvhdpiyqGAGAMGQagIPQPKQGAVTNAHGGVLFIDEIGELHPIQMNKLL 200
Cdd:PRK14969 83 dsgrfvdLIEVDAASNT--------------------QVDAMRE--LLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAML 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 201 KVLEDrkvflesayyseentqiPnhihdifqnglPADFRLIGATTrTPNEIPPAIRSRCLEVFFRDL------------- 267
Cdd:PRK14969 141 KTLEE-----------------P-----------PEHVKFILATT-DPQKIPVTVLSRCLQFNLKQMppplivshlqhil 191
|
250 260
....*....|....*....|
gi 1093537117 268 -------EQAELAVVARKAA 280
Cdd:PRK14969 192 eqenipfDATALQLLARAAA 211
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
58-143 |
8.45e-07 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 50.88 E-value: 8.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 58 PLSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIYGPPGVGKTAAarlVLEEAKQNNKSPFKPAAvfIELDATtar 137
Cdd:PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTS---ILALAHELLGPNYKEAV--LELNAS--- 73
|
....*.
gi 1093537117 138 fDERGI 143
Cdd:PLN03025 74 -DDRGI 78
|
|
| TIGR02928 |
TIGR02928 |
orc1/cdc6 family replication initiation protein; Members of this protein family are found ... |
59-115 |
1.11e-06 |
|
orc1/cdc6 family replication initiation protein; Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274354 [Multi-domain] Cd Length: 365 Bit Score: 50.71 E-value: 1.11e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1093537117 59 LSERVRPKSfsdIVGQEDGI----KALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 115
Cdd:TIGR02928 8 LEPDYVPDR---IVHRDEQIeelaKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
59-261 |
2.93e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 50.10 E-value: 2.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 59 LSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIY-GPPGVGKTAAARLVleeAKQ-NNKSP-------FKPAAV-- 127
Cdd:PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFtGTRGVGKTTVSRIL---AKSlNCQGPdgqggitATPCGVcq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 128 ------------FIELDATTAR-FDErgIADPLIGSVHDPIyqgagamgqagipqpkqgavtNAHGGVLFIDEIGELHPI 194
Cdd:PRK14951 83 acrdidsgrfvdYTELDAASNRgVDE--VQQLLEQAVYKPV---------------------QGRFKVFMIDEVHMLTNT 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1093537117 195 QMNKLLKVLEDRkvflesayyseentqiPNHIhdifqnglpadfRLIGATTrTPNEIPPAIRSRCLE 261
Cdd:PRK14951 140 AFNAMLKTLEEP----------------PEYL------------KFVLATT-DPQKVPVTVLSRCLQ 177
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
59-261 |
4.22e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 49.85 E-value: 4.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 59 LSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIY-GPPGVGKTAAARLVLEEAKQNNKSPFKPAAV---------- 127
Cdd:PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFtGTRGVGKTTLSRIFAKALNCETGVTSQPCGVcracreideg 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 128 ----FIELDATTAR-FDErgIADPLIGSVHDPIyqgagamgqagipqpkqgavtNAHGGVLFIDEIGELHPIQMNKLLKV 202
Cdd:PRK07003 86 rfvdYVEMDAASNRgVDE--MAALLERAVYAPV---------------------DARFKVYMIDEVHMLTNHAFNAMLKT 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1093537117 203 LEDrkvflesayyseentqiPnhihdifqnglPADFRLIGATTrTPNEIPPAIRSRCLE 261
Cdd:PRK07003 143 LEE-----------------P-----------PPHVKFILATT-DPQKIPVTVLSRCLQ 172
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
64-247 |
4.69e-06 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 48.92 E-value: 4.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 64 RPKSFSDIVGQEDgIK-----ALKAALC-GPNPQHVIIYGPPGVGKTAAARLVLEEAKQNnkspfkpaavfieLDATTAr 137
Cdd:COG2255 23 RPKRLDEYIGQEK-VKenlkiFIEAAKKrGEALDHVLLYGPPGLGKTTLAHIIANEMGVN-------------IRITSG- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 138 fdergiadpligsvhdPIYQGAGAMgqAGIpqpkqgaVTN-AHGGVLFIDEIGELHPIQMNKLLKVLEDRKVFL-----E 211
Cdd:COG2255 88 ----------------PAIEKPGDL--AAI-------LTNlEEGDVLFIDEIHRLSRVVEEILYPAMEDFRLDIvigkgP 142
|
170 180 190
....*....|....*....|....*....|....*.
gi 1093537117 212 SAyyseENTQIPnhihdifqngLPAdFRLIGATTRT 247
Cdd:COG2255 143 AA----RSIRLD----------LPP-FTLVGATTRA 163
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
58-208 |
6.16e-06 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 48.95 E-value: 6.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 58 PLSERVRPKS-FSDIVGQEDGIKALKA--ALCGPNPQHVIIYGPPGVGKTAAAR-LVLEEAKQNNKSPFKPAAVFIELDA 133
Cdd:PRK15424 207 ATRNALRTRYvLGDLLGQSPQMEQVRQtiLLYARSSAAVLIQGETGTGKELAAQaIHREYFARHDARQGKKSHPFVAVNC 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 134 TtarfderGIADPLIGS----VHDPIYQGAGAMGQAGIpqpkqgaVTNAHGGVLFIDEIGELH-PIQmNKLLKVLEDRKV 208
Cdd:PRK15424 287 G-------AIAESLLEAelfgYEEGAFTGSRRGGRAGL-------FEIAHGGTLFLDEIGEMPlPLQ-TRLLRVLEEKEV 351
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
93-246 |
1.13e-05 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 47.92 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 93 VIIYGPPGVGKTAAARLVlEEAKQNNKSPFkpaavfieLDATTARFDERGIADPLIGsvHDpiyQGA--GAMGQagipqp 170
Cdd:PRK11361 169 VLISGESGTGKELIARAI-HYNSRRAKGPF--------IKVNCAALPESLLESELFG--HE---KGAftGAQTL------ 228
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1093537117 171 KQGAVTNAHGGVLFIDEIGELHPIQMNKLLKVLEDRkvflesayyseENTQIPNHihdifqNGLPADFRLIGATTR 246
Cdd:PRK11361 229 RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQER-----------EFERIGGH------QTIKVDIRIIAATNR 287
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
59-280 |
1.19e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 48.27 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 59 LSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIY-GPPGVGKTAAARLVleeAK----QNNKSPFKPAAV------ 127
Cdd:PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFtGPRGVGKTSTARIL---AKavncTTNDPKGRPCGTcemcra 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 128 --------FIELDAT--TARFDERGIADPLigsvhdpiyqgagamgqagipqpkQGAVTNAHGGVLFIDEIGELHPIQMN 197
Cdd:PRK14950 83 iaegsavdVIEMDAAshTSVDDAREIIERV------------------------QFRPALARYKVYIIDEVHMLSTAAFN 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 198 KLLKVLEDRkvflesayyseentqiPNHIhdIFqnglpadfrlIGATTRTpNEIPPAIRSRCLEVFFRDLEQAELAVVAR 277
Cdd:PRK14950 139 ALLKTLEEP----------------PPHA--IF----------ILATTEV-HKVPATILSRCQRFDFHRHSVADMAAHLR 189
|
...
gi 1093537117 278 KAA 280
Cdd:PRK14950 190 KIA 192
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
57-312 |
1.62e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 47.77 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 57 EPLSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIY-GPPGVGKTAAARLVLE--------EAKQNNKSPfKPAAV 127
Cdd:PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFtGTRGVGKTTLGRLLAKclncktgvTAEPCNKCE-NCVAI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 128 -------FIELDATTarfdERGIADplIGSVHDPIYQgagamgqagipQPKQGAVTnahggVLFIDEIGELHPIQMNKLL 200
Cdd:PRK14957 83 nnnsfidLIEIDAAS----RTGVEE--TKEILDNIQY-----------MPSQGRYK-----VYLIDEVHMLSKQSFNALL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 201 KVLEDRkvflesayyseentqipnhihdifqnglPADFRLIGATTRTpNEIPPAIRSRCLEVFFRDLEQAELAVVARKAA 280
Cdd:PRK14957 141 KTLEEP----------------------------PEYVKFILATTDY-HKIPVTILSRCIQLHLKHISQADIKDQLKIIL 191
|
250 260 270
....*....|....*....|....*....|...
gi 1093537117 281 VKVNMKVSEPSIATLTSYVRNG-REVVNMMQIA 312
Cdd:PRK14957 192 AKENINSDEQSLEYIAYHAKGSlRDALSLLDQA 224
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
59-110 |
2.05e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 47.43 E-value: 2.05e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1093537117 59 LSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIY-GPPGVGKTAAARLV 110
Cdd:PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFtGARGVGKTSTARIL 58
|
|
| cdc6 |
PRK00411 |
ORC1-type DNA replication protein; |
80-115 |
2.28e-05 |
|
ORC1-type DNA replication protein;
Pssm-ID: 234751 [Multi-domain] Cd Length: 394 Bit Score: 46.76 E-value: 2.28e-05
10 20 30
....*....|....*....|....*....|....*.
gi 1093537117 80 ALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 115
Cdd:PRK00411 45 ALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE 80
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
55-103 |
2.66e-05 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 47.14 E-value: 2.66e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1093537117 55 LSEPLSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIYGPPGVGK 103
Cdd:PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGK 53
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
62-287 |
4.18e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 46.30 E-value: 4.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 62 RVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIY-GPPGVGKTAAARLVleeAKQNN--KSPfkpaavfieldaTTARF 138
Cdd:PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFsGPRGVGKTSSARAF---ARCLNcvNGP------------TPMPC 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 139 DE----RGIADpliGSVHDPI-YQGAGAMGQAGIPQPKQGAVTNAHGG---VLFIDEIGELHPIQMNKLLKVLEDRkvfl 210
Cdd:PRK06647 74 GEcsscKSIDN---DNSLDVIeIDGASNTSVQDVRQIKEEIMFPPASSryrVYIIDEVHMLSNSAFNALLKTIEEP---- 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1093537117 211 esayyseentqiPNHIHDIFqnglpadfrligATTRTpNEIPPAIRSRCLEVFFRDLEQAELAVVARKAAVKVNMKV 287
Cdd:PRK06647 147 ------------PPYIVFIF------------ATTEV-HKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY 198
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
64-292 |
4.45e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 46.32 E-value: 4.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 64 RPKSFSDIVGQEDGIKALKAAL-CGPNPQHVIIYGPPGVGKTAAARLVLEEAKQNNKSPFKPAAV--------------F 128
Cdd:PRK14964 8 RPSSFKDLVGQDVLVRILRNAFtLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTchncisiknsnhpdV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 129 IELDAT--TARFDERGIadpLIGSVHDPIyqgagamgqagipqpkqgavtNAHGGVLFIDEIGELHPIQMNKLLKVLEDr 206
Cdd:PRK14964 88 IEIDAAsnTSVDDIKVI---LENSCYLPI---------------------SSKFKVYIIDEVHMLSNSAFNALLKTLEE- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 207 kvflesayyseentqipnhihdifqnglPADF-RLIGATTRTpNEIPPAIRSRCLEVFFRDLEQAELAVVARKAAVKVNM 285
Cdd:PRK14964 143 ----------------------------PAPHvKFILATTEV-KKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI 193
|
....*..
gi 1093537117 286 KVSEPSI 292
Cdd:PRK14964 194 EHDEESL 200
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
72-118 |
5.79e-05 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 43.65 E-value: 5.79e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1093537117 72 VGQEDGIKALKAAL---CGPNPQHVIIYGPPGVGKTAAARLVLEEAKQNN 118
Cdd:pfam13191 3 VGREEELEQLLDALdrvRSGRPPSVLLTGEAGTGKTTLLRELLRALERDG 52
|
|
| AAA_2 |
pfam07724 |
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ... |
97-205 |
6.43e-05 |
|
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400187 [Multi-domain] Cd Length: 168 Bit Score: 43.72 E-value: 6.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 97 GPPGVGKTaaarlvlEEAKQNNKSPFKPAAVFIELDATTarFDERGIADPLIGSvhDPIYQGAGAMGQAgipqpkQGAVT 176
Cdd:pfam07724 10 GPTGVGKT-------ELAKALAELLFGDERALIRIDMSE--YMEEHSVSRLIGA--PPGYVGYEEGGQL------TEAVR 72
|
90 100
....*....|....*....|....*....
gi 1093537117 177 NAHGGVLFIDEIGELHPIQMNKLLKVLED 205
Cdd:pfam07724 73 RKPYSIVLIDEIEKAHPGVQNDLLQILEG 101
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
158-208 |
9.54e-05 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 45.18 E-value: 9.54e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1093537117 158 GAGAMGQAgiPQPKQGAVTNAHGGVLFIDEIGELHPiQM-NKLLKVLED---RKV 208
Cdd:COG3283 279 APGAFGNA--REGKKGLFEQANGGTVFLDEIGEMSP-QLqAKLLRFLQDgtfRRV 330
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
59-315 |
1.15e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 44.42 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 59 LSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHV-IIYGPPGVGKTAAARLVleeAKQNN------KSPFKPAAV---- 127
Cdd:PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAwLLSGTRGVGKTTIARLL---AKSLNcqngitSNPCRKCIIckei 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 128 -------FIELDAT--TARFDERGIADPLigsVHDPIYqgagamgqagipqpkqgavtnAHGGVLFIDEIGELHPIQMNK 198
Cdd:PRK14961 83 ekglcldLIEIDAAsrTKVEEMREILDNI---YYSPSK---------------------SRFKVYLIDEVHMLSRHSFNA 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 199 LLKVLEDRkvflesayyseentqiPNHIhdifqnglpadfRLIGATTRTpNEIPPAIRSRCLEVFFRDLEQAELAVVARK 278
Cdd:PRK14961 139 LLKTLEEP----------------PQHI------------KFILATTDV-EKIPKTILSRCLQFKLKIISEEKIFNFLKY 189
|
250 260 270
....*....|....*....|....*....|....*....
gi 1093537117 279 AAVKVNMKVSEPSIaTLTSYVRNG--REVVNMMQIAAGM 315
Cdd:PRK14961 190 ILIKESIDTDEYAL-KLIAYHAHGsmRDALNLLEHAINL 227
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
60-282 |
5.06e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 42.55 E-value: 5.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 60 SERVRPKSFSDIVGQEDGIKALKAALCGPN-PQHVIIYGPPGVGKTAAARLVLEEAKQNNKSPFKPAAVF--IELDATTA 136
Cdd:PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIENNHlAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFniFELDAASN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 137 RF--DERGIADpligsvhdpiyqgagamgQAGIPqPKQGAVTnahggVLFIDEIGELHPIQMNKLLKVLEDRKVflesay 214
Cdd:PRK14970 88 NSvdDIRNLID------------------QVRIP-PQTGKYK-----IYIIDEVHMLSSAAFNAFLKTLEEPPA------ 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1093537117 215 yseentqipnhiHDIFqnglpadfrlIGATTRTpNEIPPAIRSRCLEVFFRDLE----QAELAVVARKAAVK 282
Cdd:PRK14970 138 ------------HAIF----------ILATTEK-HKIIPTILSRCQIFDFKRITikdiKEHLAGIAVKEGIK 186
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
93-208 |
7.58e-04 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 42.13 E-value: 7.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 93 VIIYGPPGVGKTAAARlVLEEAKQNNKSPFkpaaVFIELDAttarFDERGIADPLIGSVhdpiyQGA--GAMGQagipqp 170
Cdd:PRK15115 160 VLINGQSGTGKEILAQ-AIHNASPRASKPF----IAINCGA----LPEQLLESELFGHA-----RGAftGAVSN------ 219
|
90 100 110
....*....|....*....|....*....|....*...
gi 1093537117 171 KQGAVTNAHGGVLFIDEIGELHPIQMNKLLKVLEDRKV 208
Cdd:PRK15115 220 REGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKV 257
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
59-109 |
7.67e-04 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 42.17 E-value: 7.67e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1093537117 59 LSERVRPKSFSDIVGQEDGIKALKAALCGPNPQHVIIY-GPPGVGKTAAARL 109
Cdd:PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFsGPRGCGKTSSARI 54
|
|
| clpC |
CHL00095 |
Clp protease ATP binding subunit |
40-205 |
8.97e-04 |
|
Clp protease ATP binding subunit
Pssm-ID: 214361 [Multi-domain] Cd Length: 821 Bit Score: 42.35 E-value: 8.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 40 SRKEMEQLKKMRsiklsEPLSERvrpksfsdIVGQEDGI----KALKAALCG-PNPQHVI----IYGPPGVGKTaaarlv 110
Cdd:CHL00095 493 TKSESEKLLHME-----ETLHKR--------IIGQDEAVvavsKAIRRARVGlKNPNRPIasflFSGPTGVGKT------ 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 111 lEEAKQNNKSPFKPAAVFIELDATtaRFDERGIADPLIGSvhDPIYQGAGAMGQAgipqpkQGAVTNAHGGVLFIDEIGE 190
Cdd:CHL00095 554 -ELTKALASYFFGSEDAMIRLDMS--EYMEKHTVSKLIGS--PPGYVGYNEGGQL------TEAVRKKPYTVVLFDEIEK 622
|
170
....*....|....*
gi 1093537117 191 LHPIQMNKLLKVLED 205
Cdd:CHL00095 623 AHPDIFNLLLQILDD 637
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
71-329 |
1.22e-03 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 40.92 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 71 IVGQEDGIKALKAAL-CGpnpQHVIIYGPPGVGKTAAARLVleeakqnnkspfkpAAVfieLDATTARfdergI------ 143
Cdd:COG0714 14 YVGQEELIELVLIALlAG---GHLLLEGVPGVGKTTLAKAL--------------ARA---LGLPFIR-----Iqftpdl 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 144 --ADpLIGSvhdPIYQgagamGQAGIPQPKQGAV-TNahggVLFIDEIgelhpiqmNK--------LLKVLEDRKVfles 212
Cdd:COG0714 69 lpSD-ILGT---YIYD-----QQTGEFEFRPGPLfAN----VLLADEI--------NRappktqsaLLEAMEERQV---- 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 213 ayyseentQIPNHIHDifqngLPADFRLIgAT--------TRtpnEIPPAIRSRCLevFFRDL----EQAELAVVARKAA 280
Cdd:COG0714 124 --------TIPGGTYK-----LPEPFLVI-ATqnpieqegTY---PLPEAQLDRFL--LKLYIgypdAEEEREILRRHTG 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 281 VKV--------------------NMKVSEP---SIATLTSYVRNG---------REVVNMMQIAAGMAMTEDRTEITMQD 328
Cdd:COG0714 185 RHLaevepvlspeellalqelvrQVHVSEAvldYIVDLVRATREHpdlrkgpspRASIALLRAARALALLDGRDYVTPDD 264
|
.
gi 1093537117 329 I 329
Cdd:COG0714 265 V 265
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
89-200 |
1.39e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 38.86 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 89 NPQHVIIYGPPGVGKTAAARLVLEEAKQNNKSpfkpaAVFIELDATTARfdeRGIADPLIGSVHDPIY--QGAGAMGQAG 166
Cdd:pfam13401 4 GAGILVLTGESGTGKTTLLRRLLEQLPEVRDS-----VVFVDLPSGTSP---KDLLRALLRALGLPLSgrLSKEELLAAL 75
|
90 100 110
....*....|....*....|....*....|....
gi 1093537117 167 IPQPKQGAVTnahgGVLFIDEIGELHPIQMNKLL 200
Cdd:pfam13401 76 QQLLLALAVA----VVLIIDEAQHLSLEALEELR 105
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
93-332 |
1.52e-03 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 40.71 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 93 VIIYGPPGVGKTAAARLVleeAKQNnkspfkPAAVFIELDATTAR-------FDERGIADPLiGSVHDPIYQGAGAMGqa 165
Cdd:COG2842 53 GVVYGESGVGKTTAAREY---ANRN------PNVIYVTASPSWTSkelleelAEELGIPAPP-GTIADLRDRILERLA-- 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 166 gipqpkqgavtnAHGGVLFIDEIGELHPiqmnkllKVLED-RkvflesayyseentqipnHIHDifQNGLPadFRLIGaT 244
Cdd:COG2842 121 ------------GTGRLLIIDEADHLKP-------KALEElR------------------DIHD--ETGVG--VVLIG-M 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 245 TRTPNEIP--PAIRSRCLEVF-FRDLEQAELAVVARKAAvkvnmKVSEPSIATLTSYVRNG--REVVNMMQIAAGMAMTE 319
Cdd:COG2842 159 ERLPAKLKryEQLYSRIGFWVeFKPLSLEDVRALAEAWG-----ELTDPDLLELLHRITRGnlRRLDRTLRLAARAAKRN 233
|
250
....*....|...
gi 1093537117 320 DRTEITMQDIEWV 332
Cdd:COG2842 234 GLTKITLDHVRAA 246
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
67-115 |
1.81e-03 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 39.52 E-value: 1.81e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1093537117 67 SFSDIVGQEDGIKALK------------AALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 115
Cdd:cd19501 2 TFKDVAGCEEAKEELKevveflknpekfTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 62
|
|
| PTZ00361 |
PTZ00361 |
26 proteosome regulatory subunit 4-like protein; Provisional |
61-113 |
1.94e-03 |
|
26 proteosome regulatory subunit 4-like protein; Provisional
Pssm-ID: 185575 [Multi-domain] Cd Length: 438 Bit Score: 40.91 E-value: 1.94e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1093537117 61 ERVRPKSFSDIVGQEDGIKALKAA----LCGPN---------PQHVIIYGPPGVGKTAAARLVLEE 113
Cdd:PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAvelpLTHPElyddigikpPKGVILYGPPGTGKTLLAKAVANE 240
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
64-109 |
2.70e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 40.62 E-value: 2.70e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1093537117 64 RPKSFSDIVGQEDGIKALKAALCGPNPQHViiY---GPPGVGKTAAARL 109
Cdd:PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGRLHHA--YlfsGTRGVGKTTIARL 57
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
59-206 |
2.89e-03 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 40.12 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 59 LSERVRPKSFSDIVGQEDGIKALKAAL--CGPNPQHVIIYGPPGVGKTAAARLVLEEAKQNNKsPFkpaaVFIELDAtta 136
Cdd:TIGR02915 129 LQSALGGTALRGLITSSPGMQKICRTIekIAPSDITVLLLGESGTGKEVLARALHQLSDRKDK-RF----VAINCAA--- 200
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1093537117 137 rfdergIADPLIGSVHDPIYQGA--GAMGQAgipqpkQGAVTNAHGGVLFIDEIGELhPIQMN-KLLKVLEDR 206
Cdd:TIGR02915 201 ------IPENLLESELFGYEKGAftGAVKQT------LGKIEYAHGGTLFLDEIGDL-PLNLQaKLLRFLQER 260
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
173-203 |
2.91e-03 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 40.16 E-value: 2.91e-03
10 20 30
....*....|....*....|....*....|....*....
gi 1093537117 173 GAVTN-------AHGGVLFIDEIGELH-PIQMnKLLKVL 203
Cdd:PRK05022 268 GAISNrsgkfelADGGTLFLDEIGELPlALQA-KLLRVL 305
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
24-116 |
3.46e-03 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 39.85 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 24 NLLKNQRTQKVSIDRESRKEMEQLKKMRsikLSEPLSERVRpKSFSDIVGQEDGIKALKAALCG---------PNPQHVI 94
Cdd:COG1419 92 EQLSGLAGESARLPPELAELLERLLEAG---VSPELARELL-EKLPEDLSAEEAWRALLEALARrlpvaedplLDEGGVI 167
|
90 100
....*....|....*....|....*...
gi 1093537117 95 I-YGPPGVGKT---A--AARLVLEEAKQ 116
Cdd:COG1419 168 AlVGPTGVGKTttiAklAARFVLRGKKK 195
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
44-117 |
3.98e-03 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 39.89 E-value: 3.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093537117 44 MEQLKKMRSIKLSEPLSErVRPKSFSDIVGQEDGIKALKAALCGP-------------NPQHVIIYGPPGVGKTAAARLV 110
Cdd:TIGR01243 429 MEALKMVEPSAIREVLVE-VPNVRWSDIGGLEEVKQELREAVEWPlkhpeifekmgirPPKGVLLFGPPGTGKTLLAKAV 507
|
....*..
gi 1093537117 111 LEEAKQN 117
Cdd:TIGR01243 508 ATESGAN 514
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
62-108 |
4.37e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 39.85 E-value: 4.37e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1093537117 62 RV-RPKSFSDIVGQEDGIKALKAALCGPNPQHVIIY-GPPGVGKTAAAR 108
Cdd:PRK05563 8 RKwRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFsGPRGTGKTSAAK 56
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
90-115 |
4.65e-03 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 38.04 E-value: 4.65e-03
10 20
....*....|....*....|....*.
gi 1093537117 90 PQHVIIYGPPGVGKTAAARLVLEEAK 115
Cdd:cd19503 34 PRGVLLHGPPGTGKTLLARAVANEAG 59
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| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
57-108 |
5.35e-03 |
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DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 39.56 E-value: 5.35e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1093537117 57 EPLSERVRPKSFSDIVGQEdGIKA-LKAAL-----------CGPNpqhviiygppGVGKTAAAR 108
Cdd:PRK14948 4 EPLHHKYRPQRFDELVGQE-AIATtLKNALisnriapaylfTGPR----------GTGKTSSAR 56
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| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
64-109 |
6.78e-03 |
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DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 39.42 E-value: 6.78e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1093537117 64 RPKSFSDIVGQEDGIKALKAALCGPNPQHVIIY-GPPGVGKTAAARL 109
Cdd:PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFsGPRGTGKTSVAKI 59
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| RecA-like_VPS4-like |
cd19509 |
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ... |
71-135 |
9.40e-03 |
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ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410917 [Multi-domain] Cd Length: 163 Bit Score: 37.33 E-value: 9.40e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1093537117 71 IVGQEDGIKALKAALCGPN------------PQHVIIYGPPGVGKTAAARLVLEEAKqnnkspfkpaAVFIELDATT 135
Cdd:cd19509 1 IAGLDDAKEALKEAVILPSlrpdlfpglrgpPRGILLYGPPGTGKTLLARAVASESG----------STFFSISASS 67
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