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Conserved domains on  [gi|1112925041|ref|WP_071995759|]
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MULTISPECIES: TraY domain-containing protein [Enterobacterales]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TraY super family cl27023
TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved ...
 3-45 2.78e-17

TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved in bacterial conjugation where it is required for efficient nick formation in the F plasmid. These proteins have a ribbon-helix-helix fold and are likely to be DNA-binding proteins.


The actual alignment was detected with superfamily member PRK13740:

Pssm-ID: 452705  Cd Length: 70  Bit Score: 67.50  E-value: 2.78e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1112925041  3 LDDETNRRLIKAKDRSRRSKTSEAYFRLKDHLERFPDFYNSEI 45
Cdd:PRK13740  18 LDEDTNNKLIEAKERSGRSKTNEVQIRLRDHLKRFPDFYNSEI 60
 
Name Accession Description Interval E-value
PRK13740 PRK13740
conjugal transfer relaxosome protein TraY;
3-45 2.78e-17

conjugal transfer relaxosome protein TraY;


Pssm-ID: 184292  Cd Length: 70  Bit Score: 67.50  E-value: 2.78e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1112925041  3 LDDETNRRLIKAKDRSRRSKTSEAYFRLKDHLERFPDFYNSEI 45
Cdd:PRK13740  18 LDEDTNNKLIEAKERSGRSKTNEVQIRLRDHLKRFPDFYNSEI 60
TraY pfam05509
TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved ...
 1-47 2.81e-17

TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved in bacterial conjugation where it is required for efficient nick formation in the F plasmid. These proteins have a ribbon-helix-helix fold and are likely to be DNA-binding proteins.


Pssm-ID: 428502  Cd Length: 49  Bit Score: 66.89  E-value: 2.81e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1112925041  1 MRLDDETNRRLIKAKDRSRRSKTSEAYFRLKDHLERFPDFYNSEINK 47
Cdd:pfam05509  3 LQLDEETNKLLEEAAERSGRSKRKEAALRLKDHLDRFPDIYESEKRE 49
 
Name Accession Description Interval E-value
PRK13740 PRK13740
conjugal transfer relaxosome protein TraY;
3-45 2.78e-17

conjugal transfer relaxosome protein TraY;


Pssm-ID: 184292  Cd Length: 70  Bit Score: 67.50  E-value: 2.78e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1112925041  3 LDDETNRRLIKAKDRSRRSKTSEAYFRLKDHLERFPDFYNSEI 45
Cdd:PRK13740  18 LDEDTNNKLIEAKERSGRSKTNEVQIRLRDHLKRFPDFYNSEI 60
TraY pfam05509
TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved ...
 1-47 2.81e-17

TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved in bacterial conjugation where it is required for efficient nick formation in the F plasmid. These proteins have a ribbon-helix-helix fold and are likely to be DNA-binding proteins.


Pssm-ID: 428502  Cd Length: 49  Bit Score: 66.89  E-value: 2.81e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1112925041  1 MRLDDETNRRLIKAKDRSRRSKTSEAYFRLKDHLERFPDFYNSEINK 47
Cdd:pfam05509  3 LQLDEETNKLLEEAAERSGRSKRKEAALRLKDHLDRFPDIYESEKRE 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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