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Conserved domains on  [gi|1119636415|ref|WP_072557270|]
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MULTISPECIES: ATP-binding cassette domain-containing protein [Bacillus]

Protein Classification

ABC transporter ATP-binding protein( domain architecture ID 11438158)

ABC transporter ATP-binding protein is the ATPase catalytic subunit of an ATP transporter complex responsible for coupling the energy of ATP hydrolysis to the import of one or more from a variety of substrates, similar to iron (ferric) import ATP-binding proteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FepC COG1120
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ...
 1-253 3.64e-107

ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];


:

Pssm-ID: 440737 [Multi-domain]  Cd Length: 254  Bit Score: 317.37  E-value: 3.64e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGK---------TTllhlltgtlPAKEGRVYLAGKLLADYKPKE 71
Cdd:COG1120     2 LEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKstllralagLL---------KPSSGEVLLDGRDLASLSRRE 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  72 LAQIMAVLPQKTDQAFTFTVEETVAFGRYPFQtGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQA 151
Cdd:COG1120    73 LARRIAYVPQEPPAPFGLTVRELVALGRYPHL-GLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARA 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 152 LAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT---AGPkqkPEYAVTE 228
Cdd:COG1120   152 LAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRivaQGP---PEEVLTP 228

                         250       260
                  ....*....|....*....|....*
gi 1119636415 229 QSIKAVYDTDVTALVHQSSPKPMIV 253
Cdd:COG1120   229 ELLEEVYGVEARVIEDPVTGRPLVL 253
CbiZ super family cl00808
Adenosylcobinamide amidohydrolase; This prokaryotic protein family includes CbiZ which ...
 276-440 2.68e-14

Adenosylcobinamide amidohydrolase; This prokaryotic protein family includes CbiZ which converts adenosylcobinamide (AdoCbi) to adenosylcobyric acid (AdoCby), an intermediate of the de novo coenzyme B12 biosynthetic route.


The actual alignment was detected with superfamily member COG1865:

Pssm-ID: 469934  Cd Length: 224  Bit Score: 71.83  E-value: 2.68e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 276 RDDILLQTEIPLRTLSSTPIGAGFSWSRTLIHKRLP---DQPDPIEGLTACLSESGFQLQETCAMASSERLDHFVYRTYE 352
Cdd:COG1865    11 DGVLVVRFPGPRRVLSTAVLNGGLREARAVFNHQVPedyDRTDPEEYLAEVLARLGLPPGDTVGLLTAADMENAAIAEES 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 353 DGELSVFICVQTGFS------------------------IWILINGYAADQFFIKALM-AAEAeRTKVLGD--------- 398
Cdd:COG1865    91 FGGLSVTAVVTAGVSnavragadpasyyeprppppgtinIIVLINAPLSDGALVNAVItATEA-KTAALQElgigsrysg 169

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 399 GRGTG---D-ILIAATqtqQSENIEQ------RLNQLIKKGTAECVKEAAEL 440
Cdd:COG1865   170 GLATGtgtDaIAVAAP---PDGEPLTyagkhtKLGELIGRAVYEAVREALRR 218
 
Name Accession Description Interval E-value
FepC COG1120
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ...
 1-253 3.64e-107

ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];


Pssm-ID: 440737 [Multi-domain]  Cd Length: 254  Bit Score: 317.37  E-value: 3.64e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGK---------TTllhlltgtlPAKEGRVYLAGKLLADYKPKE 71
Cdd:COG1120     2 LEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKstllralagLL---------KPSSGEVLLDGRDLASLSRRE 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  72 LAQIMAVLPQKTDQAFTFTVEETVAFGRYPFQtGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQA 151
Cdd:COG1120    73 LARRIAYVPQEPPAPFGLTVRELVALGRYPHL-GLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARA 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 152 LAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT---AGPkqkPEYAVTE 228
Cdd:COG1120   152 LAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRivaQGP---PEEVLTP 228

                         250       260
                  ....*....|....*....|....*
gi 1119636415 229 QSIKAVYDTDVTALVHQSSPKPMIV 253
Cdd:COG1120   229 ELLEEVYGVEARVIEDPVTGRPLVL 253
hmuV PRK13548
hemin importer ATP-binding subunit; Provisional
 3-255 1.90e-86

hemin importer ATP-binding subunit; Provisional


Pssm-ID: 237422 [Multi-domain]  Cd Length: 258  Bit Score: 264.33  E-value: 1.90e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQK 82
Cdd:PRK13548    5 ARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 TDQAFTFTVEETVAFGRYPFQTGlfrqqTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQ------QP 156
Cdd:PRK13548   85 SSLSFPFTVEEVVAMGRAPHGLS-----RAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQlwepdgPP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT---AGPkqkPEYAVTEQSIKA 233
Cdd:PRK13548  160 RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRlvaDGT---PAEVLTPETLRR 236

                         250       260
                  ....*....|....*....|..
gi 1119636415 234 VYDTDVTALVHQSSPKPMIVIQ 255
Cdd:PRK13548  237 VYGADVLVQPHPETGAPLVLPR 258
ABC_Iron-Siderophores_B12_Hemin cd03214
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ...
 2-215 1.78e-76

ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.


Pssm-ID: 213181 [Multi-domain]  Cd Length: 180  Bit Score: 236.18  E-value: 1.78e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQ 81
Cdd:cd03214     1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 ktdqaftftveetvafgrypfqtglfrqqtekdeaivqeAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFL 161
Cdd:cd03214    81 ---------------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLL 121

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:cd03214   122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGR 175
F420-0_ABC_ATP TIGR03873
proposed F420-0 ABC transporter, ATP-binding protein; This small clade of ABC-type transporter ...
 1-256 5.66e-54

proposed F420-0 ABC transporter, ATP-binding protein; This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163585 [Multi-domain]  Cd Length: 256  Bit Score: 180.78  E-value: 5.66e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLP 80
Cdd:TIGR03873   2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTFTVEETVAFGRYPFQtGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILF 160
Cdd:TIGR03873  82 QDSDTAVPLTVRDVVALGRIPHR-SLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 161 LDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG---TAGPkqkPEYAVTEQSIKAVYDT 237
Cdd:TIGR03873 161 LDEPTNHLDVRAQLETLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVLDGGrvvAAGP---PREVLTPALIRAVYGV 236

                         250
                  ....*....|....*....
gi 1119636415 238 DVTALVHQSSPKPMIVIQP 256
Cdd:TIGR03873 237 DATVLTHPDTGRPIIAFSP 255
AztA NF040873
zinc ABC transporter ATP-binding protein AztA;
9-203 4.63e-41

zinc ABC transporter ATP-binding protein AztA;


Pssm-ID: 468810 [Multi-domain]  Cd Length: 191  Bit Score: 144.68  E-value: 4.63e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   9 GYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGklladykpkelAQIMAVLPQKT--DQA 86
Cdd:NF040873    1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAG-----------GARVAYVPQRSevPDS 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  87 FTFTVEETVAFGRYPfQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:NF040873   70 LPLTVRDLVAMGRWA-RRGLWRRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTT 148

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1119636415 167 FLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASL 203
Cdd:NF040873  149 GLDAESRERIIALLAEEHAR-GATVVVVTHDLELVRR 184
ABC_tran pfam00005
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ...
 16-166 2.96e-30

ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.


Pssm-ID: 394964 [Multi-domain]  Cd Length: 150  Bit Score: 114.28  E-value: 2.96e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAFTFTVEETV 95
Cdd:pfam00005   1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGYVFQDPQLFPRLTVRENL 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415  96 AFGRYpfqtgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIR----ELSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:pfam00005  81 RLGLL-----LKGLSKREKDARAEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
CbiZ COG1865
Adenosylcobinamide amidohydrolase [Coenzyme transport and metabolism];
276-440 2.68e-14

Adenosylcobinamide amidohydrolase [Coenzyme transport and metabolism];


Pssm-ID: 441470  Cd Length: 224  Bit Score: 71.83  E-value: 2.68e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 276 RDDILLQTEIPLRTLSSTPIGAGFSWSRTLIHKRLP---DQPDPIEGLTACLSESGFQLQETCAMASSERLDHFVYRTYE 352
Cdd:COG1865    11 DGVLVVRFPGPRRVLSTAVLNGGLREARAVFNHQVPedyDRTDPEEYLAEVLARLGLPPGDTVGLLTAADMENAAIAEES 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 353 DGELSVFICVQTGFS------------------------IWILINGYAADQFFIKALM-AAEAeRTKVLGD--------- 398
Cdd:COG1865    91 FGGLSVTAVVTAGVSnavragadpasyyeprppppgtinIIVLINAPLSDGALVNAVItATEA-KTAALQElgigsrysg 169

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 399 GRGTG---D-ILIAATqtqQSENIEQ------RLNQLIKKGTAECVKEAAEL 440
Cdd:COG1865   170 GLATGtgtDaIAVAAP---PDGEPLTyagkhtKLGELIGRAVYEAVREALRR 218
ABC2_perm_RbbA NF033858
ribosome-associated ATPase/putative transporter RbbA;
3-211 5.16e-11

ribosome-associated ATPase/putative transporter RbbA;


Pssm-ID: 468210 [Multi-domain]  Cd Length: 907  Bit Score: 64.76  E-value: 5.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLAdykPKELAQ-----IMA 77
Cdd:NF033858  269 ARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVD---AGDIATrrrvgYMS 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  78 vlpqktdQAFTFTVEETV-------AfgRypfqtgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQ 150
Cdd:NF033858  346 -------QAFSLYGELTVrqnlelhA--R------LFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAV 410

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 151 ALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGlaaVSVF---HDLNTAsLYCDELMFM 211
Cdd:NF033858  411 AVIHKPELLILDEPTSGVDPVARDMFWRLLIELSREDG---VTIFistHFMNEA-ERCDRISLM 470
40850658_otr NF000106
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
1-186 2.46e-09

oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;


Pssm-ID: 411078 [Multi-domain]  Cd Length: 351  Bit Score: 58.59  E-value: 2.46e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKElAQIMAVLP 80
Cdd:NF000106   14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*GPDAGRRPWRF*TWCANRRALR-RTIG*HRP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTFTVEETVafgrypFQTGLFRQQTEKD-EAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRIL 159
Cdd:NF000106   93 VR*GRRESFSGRENL------YMIGR*LDLSRKDaRARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVL 166

                         170       180
                  ....*....|....*....|....*..
gi 1119636415 160 FLDEPTNFLDLAYQKDLLDLIKRLTRE 186
Cdd:NF000106  167 YLDEPTTGLDPRTRNEVWDEVRSMVRD 193
GguA NF040905
sugar ABC transporter ATP-binding protein;
17-199 5.62e-08

sugar ABC transporter ATP-binding protein;


Pssm-ID: 468840 [Multi-domain]  Cd Length: 500  Bit Score: 54.80  E-value: 5.62e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  17 NNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAK--EGRVYLAGKLLA--DYKPKELAQI------MAVLPQktdqa 86
Cdd:NF040905   18 DDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGsyEGEILFDGEVCRfkDIRDSEALGIviihqeLALIPY----- 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  87 ftFTVEETVAFGRYPFQTGLF-RQQTEKDEAivqEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPT 165
Cdd:NF040905   93 --LSIAENIFLGNERAKRGVIdWNETNRRAR---ELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKDVKLLILDEPT 167

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1119636415 166 NFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLN 199
Cdd:NF040905  168 AALNEEDSAALLDLLLEL-KAQGITSIIISHKLN 200
ABC2_perm_RbbA NF033858
ribosome-associated ATPase/putative transporter RbbA;
4-165 7.55e-08

ribosome-associated ATPase/putative transporter RbbA;


Pssm-ID: 468210 [Multi-domain]  Cd Length: 907  Bit Score: 54.75  E-value: 7.55e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKElaqimAVLPQKt 83
Cdd:NF033858    5 EGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMADARHRR-----AVCPRI- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  84 dqAF-----------TFTVEETVAF-GRypfqtgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQA 151
Cdd:NF033858   79 --AYmpqglgknlypTLSVFENLDFfGR------LFGQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCA 150

                         170
                  ....*....|....
gi 1119636415 152 LAQQPRILFLDEPT 165
Cdd:NF033858  151 LIHDPDLLILDEPT 164
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 136-180 4.87e-04

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 40.43  E-value: 4.87e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 1119636415  136 RELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLI 180
Cdd:smart00382  59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLE 103
GguA NF040905
sugar ABC transporter ATP-binding protein;
138-165 5.63e-04

sugar ABC transporter ATP-binding protein;


Pssm-ID: 468840 [Multi-domain]  Cd Length: 500  Bit Score: 42.08  E-value: 5.63e-04
                          10        20
                  ....*....|....*....|....*...
gi 1119636415 138 LSGGEQQRVYLAQALAQQPRILFLDEPT 165
Cdd:NF040905  405 LSGGNQQKVVLSKWLFTDPDVLILDEPT 432
 
Name Accession Description Interval E-value
FepC COG1120
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ...
 1-253 3.64e-107

ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];


Pssm-ID: 440737 [Multi-domain]  Cd Length: 254  Bit Score: 317.37  E-value: 3.64e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGK---------TTllhlltgtlPAKEGRVYLAGKLLADYKPKE 71
Cdd:COG1120     2 LEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKstllralagLL---------KPSSGEVLLDGRDLASLSRRE 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  72 LAQIMAVLPQKTDQAFTFTVEETVAFGRYPFQtGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQA 151
Cdd:COG1120    73 LARRIAYVPQEPPAPFGLTVRELVALGRYPHL-GLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARA 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 152 LAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT---AGPkqkPEYAVTE 228
Cdd:COG1120   152 LAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRivaQGP---PEEVLTP 228

                         250       260
                  ....*....|....*....|....*
gi 1119636415 229 QSIKAVYDTDVTALVHQSSPKPMIV 253
Cdd:COG1120   229 ELLEEVYGVEARVIEDPVTGRPLVL 253
hmuV PRK13548
hemin importer ATP-binding subunit; Provisional
 3-255 1.90e-86

hemin importer ATP-binding subunit; Provisional


Pssm-ID: 237422 [Multi-domain]  Cd Length: 258  Bit Score: 264.33  E-value: 1.90e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQK 82
Cdd:PRK13548    5 ARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 TDQAFTFTVEETVAFGRYPFQTGlfrqqTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQ------QP 156
Cdd:PRK13548   85 SSLSFPFTVEEVVAMGRAPHGLS-----RAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQlwepdgPP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT---AGPkqkPEYAVTEQSIKA 233
Cdd:PRK13548  160 RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRlvaDGT---PAEVLTPETLRR 236

                         250       260
                  ....*....|....*....|..
gi 1119636415 234 VYDTDVTALVHQSSPKPMIVIQ 255
Cdd:PRK13548  237 VYGADVLVQPHPETGAPLVLPR 258
COG4559 COG4559
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
1-256 7.07e-85

ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 443620 [Multi-domain]  Cd Length: 258  Bit Score: 260.43  E-value: 7.07e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLP 80
Cdd:COG4559     2 LEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRRAVLP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTFTVEETVAFGRYPFQTGlfrqqTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQ------ 154
Cdd:COG4559    82 QHSSLAFPFTVEEVVALGRAPHGSS-----AAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAQlwepvd 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 155 -QPRILFLDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG---TAGPkqkPEYAVTEQS 230
Cdd:COG4559   157 gGPRWLFLDEPTSALDLAHQHAVLRLARQLARR-GGGVVAVLHDLNLAAQYADRILLLHQGrlvAQGT---PEEVLTDEL 232

                         250       260
                  ....*....|....*....|....*.
gi 1119636415 231 IKAVYDTDVTALVHQSSPKPMIVIQP 256
Cdd:COG4559   233 LERVYGADLRVLAHPEGGCPQVLPRA 258
ABC_Iron-Siderophores_B12_Hemin cd03214
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ...
 2-215 1.78e-76

ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.


Pssm-ID: 213181 [Multi-domain]  Cd Length: 180  Bit Score: 236.18  E-value: 1.78e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQ 81
Cdd:cd03214     1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 ktdqaftftveetvafgrypfqtglfrqqtekdeaivqeAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFL 161
Cdd:cd03214    81 ---------------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLL 121

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:cd03214   122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGR 175
ZnuC COG1121
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ...
 2-245 1.54e-67

ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 440738 [Multi-domain]  Cd Length: 245  Bit Score: 215.34  E-value: 1.54e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKttllhlltgtlPAKEGRVYLAGKLLADYKPKelaqiMAVLPQ 81
Cdd:COG1121     8 ELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKstllkailgllPPTSGTVRLFGKPPRRARRR-----IGYVPQ 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KT--DQAFTFTVEETVAFGRYPfQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRIL 159
Cdd:COG1121    83 RAevDWDFPITVRDVVLMGRYG-RRGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 160 FLDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG--TAGPkqkPEYAVTEQSIKAVYDT 237
Cdd:COG1121   162 LLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLLNRGlvAHGP---PEEVLTPENLSRAYGG 237


                  ....*...
gi 1119636415 238 DVTALVHQ 245
Cdd:COG1121   238 PVALLAHG 245
fecE PRK11231
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
1-254 2.40e-65

Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;


Pssm-ID: 183044 [Multi-domain]  Cd Length: 255  Bit Score: 210.26  E-value: 2.40e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLP 80
Cdd:PRK11231    3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLP 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTFTVEETVAFGRYPFQTgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILF 160
Cdd:PRK11231   83 QHHLTPEGITVRELVAYGRSPWLS-LWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 161 LDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPEYAVTEQSIKAVYDTDvt 240
Cdd:PRK11231  162 LDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFDVE-- 238

                         250
                  ....*....|....*.
gi 1119636415 241 ALVHQS--SPKPMIVI 254
Cdd:PRK11231  239 AEIHPEpvSGTPMCVV 254
CeuD COG4604
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ...
 1-253 1.39e-63

ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 443654 [Multi-domain]  Cd Length: 252  Bit Score: 205.32  E-value: 1.39e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLP 80
Cdd:COG4604     2 IEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKRLAILR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTFTVEETVAFGRYPFQTGlfrQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILF 160
Cdd:COG4604    82 QENHINSRLTVRELVAFGRFPYSKG---RLTAEDREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDYVL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 161 LDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG---TAGPkqkPEYAVTEQSIKAVYDT 237
Cdd:COG4604   159 LDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGrvvAQGT---PEEIITPEVLSDIYDT 235

                         250
                  ....*....|....*.
gi 1119636415 238 DVTalVHQSSPKPMIV 253
Cdd:COG4604   236 DIE--VEEIDGKRICV 249
ABC_Metallic_Cations cd03235
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ...
 2-214 1.83e-60

ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.


Pssm-ID: 213202 [Multi-domain]  Cd Length: 213  Bit Score: 195.83  E-value: 1.83e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKlladyKPKELAQIMAVLPQ 81
Cdd:cd03235     1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK-----PLEKERKRIGYVPQ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KTDQAFTF--TVEETVAFGRYPfQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRIL 159
Cdd:cd03235    76 RRSIDRDFpiSVRDVVLMGLYG-HKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLL 154

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 160 FLDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03235   155 LLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLLNRT 208
btuD PRK09536
corrinoid ABC transporter ATPase; Reviewed
 5-236 1.15e-58

corrinoid ABC transporter ATPase; Reviewed


Pssm-ID: 236554 [Multi-domain]  Cd Length: 402  Bit Score: 197.37  E-value: 1.15e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   5 GLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTD 84
Cdd:PRK09536    8 DLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTS 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  85 QAFTFTVEETVAFGRYPfQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEP 164
Cdd:PRK09536   88 LSFEFDVRQVVEMGRTP-HRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEP 166

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 165 TNFLDLAYQKDLLDLIKRLTrESGLAAVSVFHDLNTASLYCDELMFMKNG---TAGPkqkPEYAVTEQSIKAVYD 236
Cdd:PRK09536  167 TASLDINHQVRTLELVRRLV-DDGKTAVAAIHDLDLAARYCDELVLLADGrvrAAGP---PADVLTADTLRAAFD 237
F420-0_ABC_ATP TIGR03873
proposed F420-0 ABC transporter, ATP-binding protein; This small clade of ABC-type transporter ...
 1-256 5.66e-54

proposed F420-0 ABC transporter, ATP-binding protein; This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163585 [Multi-domain]  Cd Length: 256  Bit Score: 180.78  E-value: 5.66e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLP 80
Cdd:TIGR03873   2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTFTVEETVAFGRYPFQtGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILF 160
Cdd:TIGR03873  82 QDSDTAVPLTVRDVVALGRIPHR-SLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 161 LDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG---TAGPkqkPEYAVTEQSIKAVYDT 237
Cdd:TIGR03873 161 LDEPTNHLDVRAQLETLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVLDGGrvvAAGP---PREVLTPALIRAVYGV 236

                         250
                  ....*....|....*....
gi 1119636415 238 DVTALVHQSSPKPMIVIQP 256
Cdd:TIGR03873 237 DATVLTHPDTGRPIIAFSP 255
PRK10253 PRK10253
iron-enterobactin ABC transporter ATP-binding protein;
1-253 5.15e-52

iron-enterobactin ABC transporter ATP-binding protein;


Pssm-ID: 182336 [Multi-domain]  Cd Length: 265  Bit Score: 175.94  E-value: 5.15e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLP 80
Cdd:PRK10253    8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTFTVEETVAFGRYPFQTgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILF 160
Cdd:PRK10253   88 QNATTPGDITVQELVARGRYPHQP-LFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 161 LDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPEYAVTEQSIKAVYDTDVT 240
Cdd:PRK10253  167 LDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYGLRCM 246

                         250
                  ....*....|...
gi 1119636415 241 ALVHQSSPKPMIV 253
Cdd:PRK10253  247 IIDDPVAGTPLVV 259
PRK10575 PRK10575
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
15-251 2.07e-50

Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;


Pssm-ID: 182561 [Multi-domain]  Cd Length: 265  Bit Score: 171.51  E-value: 2.07e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  15 LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAFTFTVEET 94
Cdd:PRK10575   26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVREL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  95 VAFGRYPFQTGLFRQQTEkDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQK 174
Cdd:PRK10575  106 VAIGRYPWHGALGRFGAA-DREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQV 184

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 175 DLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPEYAVTEQSIKAVYDTDVTALVHQSSPKPM 251
Cdd:PRK10575  185 DVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIYGIPMGILPHPAGAAPV 261
ABC_cobalt_CbiO_domain1 cd03225
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ...
 4-215 2.39e-50

First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.


Pssm-ID: 213192 [Multi-domain]  Cd Length: 211  Bit Score: 169.57  E-value: 2.39e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSR--LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQ 81
Cdd:cd03225     3 KNLSFSYPDGArpALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQ 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KTD-QAFTFTVEETVAFGryPFQTGLFRqqtEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILF 160
Cdd:cd03225    83 NPDdQFFGPTVEEEVAFG--LENLGLPE---EEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 161 LDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:cd03225   158 LDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
EcfA2 COG1122
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ...
 2-215 6.38e-49

Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];


Pssm-ID: 440739 [Multi-domain]  Cd Length: 230  Bit Score: 166.35  E-value: 6.38e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSR-LINNVSLTVEKGEFLGILGPNGSGKttllhlltgtlPAKEGRVYLAGKLLADYKPKELAQIMAVLP 80
Cdd:COG1122     2 ELENLSFSYPGGTpALDDVSLSIEKGEFVAIIGPNGSGKstllrllngllKPTSGEVLVDGKDITKKNLRELRRKVGLVF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTD-QAFTFTVEETVAFGryPFQTGLfrqqtEKDEA--IVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPR 157
Cdd:COG1122    82 QNPDdQLFAPTVEEDVAFG--PENLGL-----PREEIreRVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPE 154

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 158 ILFLDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:COG1122   155 VLVLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGR 211
CcmA COG1131
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
3-214 1.52e-43

ABC-type multidrug transport system, ATPase component [Defense mechanisms];


Pssm-ID: 440746 [Multi-domain]  Cd Length: 236  Bit Score: 152.53  E-value: 1.52e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADyKPKELAQIMAVLPQK 82
Cdd:COG1131     3 VRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVAR-DPAEVRRRIGYVPQE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 TDQAFTFTVEETVAFgrypfQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLD 162
Cdd:COG1131    82 PALYPDLTVRENLRF-----FARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILD 156

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 163 EPTNFLDLAYQKDLLDLIKRLtRESGlaaVSVF---HDLNTASLYCDELMFMKNG 214
Cdd:COG1131   157 EPTSGLDPEARRELWELLREL-AAEG---KTVLlstHYLEEAERLCDRVAIIDKG 207
ABC_Carb_Solutes_like cd03259
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ...
 1-214 2.52e-42

ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213226 [Multi-domain]  Cd Length: 213  Bit Score: 148.44  E-value: 2.52e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKlladykpkelaQIMAVLP 80
Cdd:cd03259     1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGR-----------DVTGVPP 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTF---------TVEETVAFGrypfqtgLFRQQTEKDE--AIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLA 149
Cdd:cd03259    70 ERRNIGMVFqdyalfphlTVAENIAFG-------LKLRGVPKAEirARVRELLELVGLEGLLNRYPHELSGGQQQRVALA 142

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 150 QALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03259   143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEG 207
GsiA COG1123
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ...
 4-214 3.30e-41

ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440740 [Multi-domain]  Cd Length: 514  Bit Score: 153.14  E-value: 3.30e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGY--GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAK---EGRVYLAGKLLADYKPKELAQIMAV 78
Cdd:COG1123     8 RDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALRGRRIGM 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 LPQKTDQAFT-FTVEETVAFGrypfqtgLFRQQTEKDEAI--VQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQ 155
Cdd:COG1123    88 VFQDPMTQLNpVTVGDQIAEA-------LENLGLSRAEARarVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALD 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1119636415 156 PRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:COG1123   161 PDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDG 219
AztA NF040873
zinc ABC transporter ATP-binding protein AztA;
9-203 4.63e-41

zinc ABC transporter ATP-binding protein AztA;


Pssm-ID: 468810 [Multi-domain]  Cd Length: 191  Bit Score: 144.68  E-value: 4.63e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   9 GYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGklladykpkelAQIMAVLPQKT--DQA 86
Cdd:NF040873    1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAG-----------GARVAYVPQRSevPDS 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  87 FTFTVEETVAFGRYPfQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:NF040873   70 LPLTVRDLVAMGRWA-RRGLWRRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTT 148

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1119636415 167 FLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASL 203
Cdd:NF040873  149 GLDAESRERIIALLAEEHAR-GATVVVVTHDLELVRR 184
GsiA COG1123
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ...
 2-234 7.22e-40

ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440740 [Multi-domain]  Cd Length: 514  Bit Score: 149.67  E-value: 7.22e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGY-----GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI- 75
Cdd:COG1123   262 EVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLRELr 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  76 --MAVLPQKTDQAF--TFTVEETVAFG-RypfqtgLFRQQTEKD-EAIVQEAMEQTG-VADFAQKPIRELSGGEQQRVYL 148
Cdd:COG1123   342 rrVQMVFQDPYSSLnpRMTVGDIIAEPlR------LHGLLSRAErRERVAELLERVGlPPDLADRYPHELSGGQRQRVAI 415

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 149 AQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT---AGPKQK---- 221
Cdd:COG1123   416 ARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRiveDGPTEEvfan 495

                         250
                  ....*....|...
gi 1119636415 222 PEYAVTEQSIKAV 234
Cdd:COG1123   496 PQHPYTRALLAAV 508
DppF COG1124
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ...
 2-214 1.37e-39

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440741 [Multi-domain]  Cd Length: 248  Bit Score: 142.63  E-value: 1.37e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYG----DSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMA 77
Cdd:COG1124     3 EVRNLSVSYGqggrRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFRRRVQ 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  78 VLPQktdQAFT-----FTVEETVAfgrYPFQ-TGLFRQqtekdEAIVQEAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQ 150
Cdd:COG1124    83 MVFQ---DPYAslhprHTVDRILA---EPLRiHGLPDR-----EERIAELLEQVGLpPSFLDRYPHQLSGGQRQRVAIAR 151

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 151 ALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:COG1124   152 ALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNG 215
FetA COG4619
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
2-215 1.52e-39

ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 443661 [Multi-domain]  Cd Length: 209  Bit Score: 141.11  E-value: 1.52e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQ 81
Cdd:COG4619     2 ELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWRRQVAYVPQ 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KTdQAFTFTVEETVAFgryPFQtglFRQQtEKDEAIVQEAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQALAQQPRILF 160
Cdd:COG4619    82 EP-ALWGGTVRDNLPF---PFQ---LRER-KFDRERALELLERLGLpPDILDKPVERLSGGERQRLALIRALLLQPDVLL 153

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 161 LDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:COG4619   154 LDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGR 208
PhnC COG3638
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ...
 4-238 2.19e-39

ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 442855 [Multi-domain]  Cd Length: 249  Bit Score: 142.12  E-value: 2.19e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLI-NNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI---MAVL 79
Cdd:COG3638     6 RNLSKRYPGGTPAlDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRRLrrrIGMI 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 PQKtdqaftF------TVEETV---AFGRYPFQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQ 150
Cdd:COG3638    86 FQQ------FnlvprlSVLTNVlagRLGRTSTWRSLLGLFPPEDRERALEALERVGLADKAYQRADQLSGGQQQRVAIAR 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 151 ALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCD--------ELMFmkNGTAGpkqkp 222
Cdd:COG3638   160 ALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADriiglrdgRVVF--DGPPA----- 232

                         250
                  ....*....|....*.
gi 1119636415 223 eyAVTEQSIKAVYDTD 238
Cdd:COG3638   233 --ELTDAVLREIYGGE 246
LolD COG1136
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
1-214 6.26e-39

ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440751 [Multi-domain]  Cd Length: 227  Bit Score: 140.18  E-value: 6.26e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLS----GGYGDSRLINNVSLTVEKGEFLGILGPNGSGKttllhlltgtlPAKEGRVYLAGKLLADYKPKELAQIM 76
Cdd:COG1136     5 LELRNLTksygTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKstllnilggldRPTSGEVLIDGQDISSLSERELARLR 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  77 A-----VLpqktdQAF----TFTVEETVAFGRYpfqtgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVY 147
Cdd:COG1136    85 RrhigfVF-----QFFnllpELTALENVALPLL-----LAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVA 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 148 LAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASlYCDELMFMKNG 214
Cdd:COG1136   155 IARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELAA-RADRVIRLRDG 220
hmuV PRK13547
heme ABC transporter ATP-binding protein;
14-253 8.58e-39

heme ABC transporter ATP-binding protein;


Pssm-ID: 184132 [Multi-domain]  Cd Length: 272  Bit Score: 141.12  E-value: 8.58e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  14 RLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAK--------EGRVYLAGKLLADYKPKELAQIMAVLPQKTDQ 85
Cdd:PRK13547   15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprgarvTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  86 AFTFTVEETVAFGRYPF--QTGlfrQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQ--------- 154
Cdd:PRK13547   95 AFAFSAREIVLLGRYPHarRAG---ALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQlwpphdaaq 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 155 QPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPEYAVTEQSIKAV 234
Cdd:PRK13547  172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAHIARC 251

                         250
                  ....*....|....*....
gi 1119636415 235 YDTDVTALVHQSSPKPMIV 253
Cdd:PRK13547  252 YGFAVRLVDAGDGVPPVIV 270
ABC_PhnC_transporter cd03256
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ...
 4-214 5.67e-38

ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213223 [Multi-domain]  Cd Length: 241  Bit Score: 138.08  E-value: 5.67e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSR-LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI---MAVL 79
Cdd:cd03256     4 ENLSKTYPNGKkALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLrrqIGMI 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 PQKTDQAFTFTVEETV---AFGRYPFQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQP 156
Cdd:cd03256    84 FQQFNLIERLSVLENVlsgRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQP 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03256   164 KLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDG 221
BtuD COG4138
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ...
 12-239 7.83e-38

ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];


Pssm-ID: 443313 [Multi-domain]  Cd Length: 248  Bit Score: 137.66  E-value: 7.83e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  12 DSRLINnVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAkEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAFTFTV 91
Cdd:COG4138     9 AGRLGP-ISAQVNAGELIHLIGPNGAGKSTLLARMAGLLPG-QGEILLNGRPLSDWSAAELARHRAYLSQQQSPPFAMPV 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  92 EETVAFGRYPfqtglfRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQ-------QPRILFLDEP 164
Cdd:COG4138    87 FQYLALHQPA------GASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLQvwptinpEGQLLLLDEP 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 165 TNFLDLAYQKDLLDLIKRLTrESGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPEYAVTEQSIKAVYDTDV 239
Cdd:COG4138   161 MNSLDVAQQAALDRLLRELC-QQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMTPENLSEVFGVKF 234
ABC_phnC TIGR02315
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ...
 1-236 1.13e-37

phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]


Pssm-ID: 131368 [Multi-domain]  Cd Length: 243  Bit Score: 137.43  E-value: 1.13e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYG-DSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI---M 76
Cdd:TIGR02315   2 LEVENLSKVYPnGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLrrrI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  77 AVLPQKTDQAFTFTVEETV---AFGRYPFQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALA 153
Cdd:TIGR02315  82 GMIFQHYNLIERLTVLENVlhgRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 154 QQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPEyAVTEQSIKA 233
Cdd:TIGR02315 162 QQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS-ELDDEVLRH 240


                  ...
gi 1119636415 234 VYD 236
Cdd:TIGR02315 241 IYG 243
ABC_NikE_OppD_transporters cd03257
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ...
 2-214 2.54e-37

ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.


Pssm-ID: 213224 [Multi-domain]  Cd Length: 228  Bit Score: 135.71  E-value: 2.54e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLS----GGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI-- 75
Cdd:cd03257     3 EVKNLSvsfpTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRrk 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  76 -MAVLPQKTDQAF--TFTVEETVAFGrYPFQTGLFRQQtEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQAL 152
Cdd:cd03257    83 eIQMVFQDPMSSLnpRMTIGEQIAEP-LRIHGKLSKKE-ARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 153 AQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03257   161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAG 222
MlaF COG1127
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ...
 4-215 1.31e-36

ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440744 [Multi-domain]  Cd Length: 241  Bit Score: 134.34  E-value: 1.31e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI---MAVLP 80
Cdd:COG1127     9 RNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYELrrrIGMLF 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QktdQA--FT-FTVEETVAFgrypfqtGLfRQQTEKDEA----IVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALA 153
Cdd:COG1127    89 Q---GGalFDsLTVFENVAF-------PL-REHTDLSEAeireLVLEKLELVGLPGAADKMPSELSGGMRKRVALARALA 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 154 QQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:COG1127   158 LDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGK 219
ABC_MJ0796_LolCDE_FtsE cd03255
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ...
 2-214 1.70e-36

ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.


Pssm-ID: 213222 [Multi-domain]  Cd Length: 218  Bit Score: 133.38  E-value: 1.70e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLS----GGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI-- 75
Cdd:cd03255     2 ELKNLSktygGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFrr 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  76 --MAVLPQktdqAF----TFTVEETVAFgryPFQtgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLA 149
Cdd:cd03255    82 rhIGFVFQ----SFnllpDLTALENVEL---PLL--LAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA 152

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 150 QALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASlYCDELMFMKNG 214
Cdd:cd03255   153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDG 216
ABC_Org_Solvent_Resistant cd03261
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ...
 4-214 3.07e-36

ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213228 [Multi-domain]  Cd Length: 235  Bit Score: 133.01  E-value: 3.07e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI---MAVLP 80
Cdd:cd03261     4 RGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLrrrMGMLF 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QktDQA-FT-FTVEETVAFgrypfqtgLFRQQTEKDE----AIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQ 154
Cdd:cd03261    84 Q--SGAlFDsLTVFENVAF--------PLREHTRLSEeeirEIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL 153

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 155 QPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03261   154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDG 213
PotA COG3842
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ...
 4-214 1.70e-35

ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443052 [Multi-domain]  Cd Length: 353  Bit Score: 134.46  E-value: 1.70e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKttllhlltgtLPAKEGRVYLAGKLLADykpkelaqimaVLPQKT 83
Cdd:COG3842     9 ENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKttllrmiagfETPDSGRILLDGRDVTG-----------LPPEKR 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  84 DQAFTF---------TVEETVAFgrypfqtGLFRQQTEKDE--AIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQAL 152
Cdd:COG3842    78 NVGMVFqdyalfphlTVAENVAF-------GLRMRGVPKAEirARVAELLELVGLEGLADRYPHQLSGGQQQRVALARAL 150

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 153 AQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:COG3842   151 APEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDG 212
ABC_DR_subfamily_A cd03230
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ...
 2-214 2.64e-35

ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213197 [Multi-domain]  Cd Length: 173  Bit Score: 128.67  E-value: 2.64e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADyKPKELAQIMAVLPQ 81
Cdd:cd03230     2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EPEEVKRRIGYLPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KTDQAFTFTVEETVafgrypfqtglfrqqtekdeaivqeameqtgvadfaqkpirELSGGEQQRVYLAQALAQQPRILFL 161
Cdd:cd03230    81 EPSLYENLTVRENL-----------------------------------------KLSGGMKQRLALAQALLHDPELLIL 119

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLTRESglaaVSVF---HDLNTASLYCDELMFMKNG 214
Cdd:cd03230   120 DEPTSGLDPESRREFWELLRELKKEG----KTILlssHILEEAERLCDRVAILNNG 171
ECF_ATPase_1 TIGR04520
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ...
 2-214 7.57e-35

energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 275313 [Multi-domain]  Cd Length: 268  Bit Score: 130.24  E-value: 7.57e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDS--RLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADykPKELAQI---M 76
Cdd:TIGR04520   2 EVENVSFSYPESekPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTLD--EENLWEIrkkV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  77 AVLPQKTDQAF-TFTVEETVAFGryPFQTGLfrqQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQ 155
Cdd:TIGR04520  80 GMVFQNPDNQFvGATVEDDVAFG--LENLGV---PREEMRKRVDEALKLVGMEDFRDREPHLLSGGQKQRVAIAGVLAMR 154

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1119636415 156 PRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTAsLYCDELMFMKNG 214
Cdd:TIGR04520 155 PDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEA-VLADRVIVMNKG 212
ModF COG1119
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ...
 10-240 2.35e-34

ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];


Pssm-ID: 440736 [Multi-domain]  Cd Length: 250  Bit Score: 128.66  E-value: 2.35e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKttllhl-ltgtlPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAFT 88
Cdd:COG1119    13 RGGKTILDDISWTVKPGEHWAILGPNGAGKstllslitgdlpPTYGNDVRLFGERRGGEDVWELRKRIGLVSPALQLRFP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  89 --FTVEETVAFGRYPfQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:COG1119    93 rdETVLDVVLSGFFD-SIGLYREPTDEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVKDPELLILDEPTA 171

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 167 FLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT---AGPKqkpEYAVTEQSIKAVYDTDVT 240
Cdd:COG1119   172 GLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRvvaAGPK---EEVLTSENLSEAFGLPVE 245
ABC_Mj1267_LivG_branched cd03219
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ...
 2-214 3.15e-34

ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).


Pssm-ID: 213186 [Multi-domain]  Cd Length: 236  Bit Score: 127.94  E-value: 3.15e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELA-------- 73
Cdd:cd03219     2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIArlgigrtf 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  74 QIMAVLPqktdqafTFTVEETV-----AFGRYPFQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYL 148
Cdd:cd03219    82 QIPRLFP-------ELTVLENVmvaaqARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEI 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1119636415 149 AQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03219   155 ARALATDPKLLLLDEPAAGLNPEETEELAELIREL-RERGITVLLVEHDMDVVMSLADRVTVLDQG 219
NatA COG4555
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ...
 2-215 3.18e-34

ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 443618 [Multi-domain]  Cd Length: 243  Bit Score: 128.05  E-value: 3.18e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQImAVLPQ 81
Cdd:COG4555     3 EVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQI-GVLPD 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KTDQAFTFTVEETVA-FGRypfqtgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILF 160
Cdd:COG4555    82 ERGLYDRLTVRENIRyFAE------LYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLL 155

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 161 LDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:COG4555   156 LDEPTNGLDVMARRLLREILRAL-KKEGKTVLFSSHIMQEVEALCDRVVILHKGK 209
ABC_PotA_N cd03300
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ...
 4-214 3.51e-34

ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213267 [Multi-domain]  Cd Length: 232  Bit Score: 127.35  E-value: 3.51e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE-----LAQIMAV 78
Cdd:cd03300     4 ENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKrpvntVFQNYAL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 LPQktdqaftFTVEETVAFGrypfqtgLFRQQTEKDE--AIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQP 156
Cdd:cd03300    84 FPH-------LTVFENIAFG-------LRLKKLPKAEikERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEP 149

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03300   150 KVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKG 207
ABC_cobalt_CbiO_domain2 cd03226
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ...
 3-215 1.07e-33

Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.


Pssm-ID: 213193 [Multi-domain]  Cd Length: 205  Bit Score: 125.45  E-value: 1.07e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSRLI-NNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKllaDYKPKELAQIMAVLPQ 81
Cdd:cd03226     2 IENISFSYKKGTEIlDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK---PIKAKERRKSIGYVMQ 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KTD-QAFTFTVEETVAFGRypfqtglfrQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILF 160
Cdd:cd03226    79 DVDyQLFTDSVREELLLGL---------KELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLI 149

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 161 LDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:cd03226   150 FDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGA 203
ABC_Class3 cd03229
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ...
 1-215 2.26e-33

ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213196 [Multi-domain]  Cd Length: 178  Bit Score: 123.84  E-value: 2.26e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYkpkelaqIMAVLP 80
Cdd:cd03229     1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDL-------EDELPP 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTF---------TVEETVAFGrypfqtglfrqqtekdeaivqeameqtgvadfaqkpireLSGGEQQRVYLAQA 151
Cdd:cd03229    74 LRRRIGMVFqdfalfphlTVLENIALG---------------------------------------LSGGQQQRVALARA 114

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 152 LAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:cd03229   115 LAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
ABC_ATPase cd00267
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ...
 2-215 9.70e-33

ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213179 [Multi-domain]  Cd Length: 157  Bit Score: 121.20  E-value: 9.70e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQ 81
Cdd:cd00267     1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 ktdqaftftveetvafgrypfqtglfrqqtekdeaivqeameqtgvadfaqkpireLSGGEQQRVYLAQALAQQPRILFL 161
Cdd:cd00267    81 --------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:cd00267   105 DEPTSGLDPASRERLLELLREL-AEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
cbiO PRK13635
energy-coupling factor ABC transporter ATP-binding protein;
16-214 2.15e-31

energy-coupling factor ABC transporter ATP-binding protein;


Pssm-ID: 184195 [Multi-domain]  Cd Length: 279  Bit Score: 121.28  E-value: 2.15e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAFT-FTVEET 94
Cdd:PRK13635   23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVgATVQDD 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  95 VAFGrypfqtgLFRQQTEKDEAI--VQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAY 172
Cdd:PRK13635  103 VAFG-------LENIGVPREEMVerVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRG 175

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1119636415 173 QKDLLDLIKRLTRESGLAAVSVFHDLNTAsLYCDELMFMKNG 214
Cdd:PRK13635  176 RREVLETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKG 216
ABC_ModC_like cd03299
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ...
 1-214 2.66e-31

ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213266 [Multi-domain]  Cd Length: 235  Bit Score: 119.75  E-value: 2.66e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLiNNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPkELAQImAVLP 80
Cdd:cd03299     1 LKVENLSKDWKEFKL-KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRDI-SYVP 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QktDQAF--TFTVEETVAFGrypfqtglFRQQTEKDEAIVQEAMEQTGVADFA----QKPiRELSGGEQQRVYLAQALAQ 154
Cdd:cd03299    78 Q--NYALfpHMTVYKNIAYG--------LKKRKVDKKEIERKVLEIAEMLGIDhllnRKP-ETLSGGEQQRVAIARALVV 146

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 155 QPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03299   147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNG 206
LivG COG0411
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ...
 16-215 2.80e-31

ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];


Pssm-ID: 440180 [Multi-domain]  Cd Length: 257  Bit Score: 120.53  E-value: 2.80e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKttllhlltgTLPAKEGRVYLAGKLLADYKPKELA--------QIMAVLPQktdqaf 87
Cdd:COG0411    20 VDDVSLEVERGEIVGLIGPNGAGKttlfnlitgFYRPTSGRILFDGRDITGLPPHRIArlgiartfQNPRLFPE------ 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  88 tFTVEETVAFGRY----------PFQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPR 157
Cdd:COG0411    94 -LTVLENVLVAAHarlgrgllaaLLRLPRARREEREARERAEELLERVGLADRADEPAGNLSYGQQRRLEIARALATEPK 172

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 158 ILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:COG0411   173 LLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGR 230
ABC_tran pfam00005
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ...
 16-166 2.96e-30

ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.


Pssm-ID: 394964 [Multi-domain]  Cd Length: 150  Bit Score: 114.28  E-value: 2.96e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAFTFTVEETV 95
Cdd:pfam00005   1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGYVFQDPQLFPRLTVRENL 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415  96 AFGRYpfqtgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIR----ELSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:pfam00005  81 RLGLL-----LKGLSKREKDARAEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
cbiO PRK13639
cobalt transporter ATP-binding subunit; Provisional
 12-214 3.18e-30

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 184199 [Multi-domain]  Cd Length: 275  Bit Score: 117.87  E-value: 3.18e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  12 DSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLaDYKPKELAQIMA----VLPQKTDQAF 87
Cdd:PRK13639   14 GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPI-KYDKKSLLEVRKtvgiVFQNPDDQLF 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  88 TFTVEETVAFGryPFQTGLFRQQTEKDeaiVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNF 167
Cdd:PRK13639   93 APTVEEDVAFG--PLNLGLSKEEVEKR---VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSG 167

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1119636415 168 LDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK13639  168 LDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDG 213
ABC_NrtD_SsuB_transporters cd03293
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ...
 1-213 1.15e-29

ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213260 [Multi-domain]  Cd Length: 220  Bit Score: 114.88  E-value: 1.15e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRL----INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKelaqiM 76
Cdd:cd03293     1 LEVRNVSKTYGGGGGavtaLEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPD-----R 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  77 AVLPQktdQAFTF---TVEETVAFGryPFQTGLFRQQTEkdeAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALA 153
Cdd:cd03293    76 GYVFQ---QDALLpwlTVLDNVALG--LELQGVPKAEAR---ERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALA 147

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 154 QQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKN 213
Cdd:cd03293   148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
SunT COG2274
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ...
 4-214 6.48e-29

ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];


Pssm-ID: 441875 [Multi-domain]  Cd Length: 711  Bit Score: 119.55  E-value: 6.48e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSR--LINNVSLTVEKGEFLGILGPNGSGKTTLlhlltgtlpAK---------EGRVYLAGKLLADYKPKEL 72
Cdd:COG2274   477 ENVSFRYPGDSppVLDNISLTIKPGERVAIVGRSGSGKSTL---------LKlllglyeptSGRILIDGIDLRQIDPASL 547

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  73 AQIMAVLPQkTDQAFTFTVEETVAFGRypfqtglfrqqTEKDEAIVQEAMEQTGVADFAQK-------PIRE----LSGG 141
Cdd:COG2274   548 RRQIGVVLQ-DVFLFSGTIRENITLGD-----------PDATDEEIIEAARLAGLHDFIEAlpmgydtVVGEggsnLSGG 615

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119636415 142 EQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSvfHDLNTASLyCDELMFMKNG 214
Cdd:COG2274   616 QRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLKGRTVIIIA--HRLSTIRL-ADRIIVLDKG 685
cbiO PRK13636
cobalt transporter ATP-binding subunit; Provisional
 1-216 6.52e-29

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 184196 [Multi-domain]  Cd Length: 283  Bit Score: 114.56  E-value: 6.52e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGD-SRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLaDYKPK---ELAQIM 76
Cdd:PRK13636    6 LKVEELNYNYSDgTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI-DYSRKglmKLRESV 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  77 AVLPQKTD-QAFTFTVEETVAFGryPFQTGLFRQQTEKDeaiVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQ 155
Cdd:PRK13636   85 GMVFQDPDnQLFSASVYQDVSFG--AVNLKLPEDEVRKR---VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119636415 156 PRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTA 216
Cdd:PRK13636  160 PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRV 220
cbiO PRK13650
energy-coupling factor transporter ATPase;
16-220 1.30e-28

energy-coupling factor transporter ATPase;


Pssm-ID: 184209 [Multi-domain]  Cd Length: 279  Bit Score: 113.67  E-value: 1.30e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAFT-FTVEET 94
Cdd:PRK13650   23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVgATVEDD 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  95 VAFGrypfqtgLFRQQTEKDEAI--VQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAY 172
Cdd:PRK13650  103 VAFG-------LENKGIPHEEMKerVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG 175

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 173 QKDLLDLIKRLTRESGLAAVSVFHDLNTASLyCDELMFMKNG----TAGPKQ 220
Cdd:PRK13650  176 RLELIKTIKGIRDDYQMTVISITHDLDEVAL-SDRVLVMKNGqvesTSTPRE 226
CcmA COG4133
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ...
 1-197 2.56e-28

ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443308 [Multi-domain]  Cd Length: 206  Bit Score: 110.65  E-value: 2.56e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKttllhlltgtLPAKEGRVYLAGKLLADyKPKELAQIMAVLP 80
Cdd:COG4133     3 LEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKttllrilaglLPPSAGEVLWNGEPIRD-AREDYRRRLAYLG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTFTVEETVAfgrypFQTGLFRQQTekDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILF 160
Cdd:COG4133    82 HADGLKPELTVRENLR-----FWAALYGLRA--DREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWL 154

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1119636415 161 LDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHD 197
Cdd:COG4133   155 LDEPFTALDAAGVALLAELIAAH-LARGGAVLLTTHQ 190
ABCG_White cd03234
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ...
 14-215 4.29e-28

White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.


Pssm-ID: 213201 [Multi-domain]  Cd Length: 226  Bit Score: 110.82  E-value: 4.29e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  14 RLINNVSLTVEKGEFLGILGPNGSGKTT---LLHLLTGTLPAKEGRVYLAGKLLadyKPKELAQIMAVLPQKTDQAFTFT 90
Cdd:cd03234    21 RILNDVSLHVESGQVMAILGSSGSGKTTlldAISGRVEGGGTTSGQILFNGQPR---KPDQFQKCVAYVRQDDILLPGLT 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  91 VEETVAFgrypfqTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRE-----LSGGEQQRVYLAQALAQQPRILFLDEPT 165
Cdd:cd03234    98 VRETLTY------TAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGnlvkgISGGERRRVSIAVQLLWDPKVLILDEPT 171

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 166 NFLD--LAYQkdLLDLIKRLTRESGLAAVSVfHDlNTASLY--CDELMFMKNGT 215
Cdd:cd03234   172 SGLDsfTALN--LVSTLSQLARRNRIVILTI-HQ-PRSDLFrlFDRILLLSSGE 221
drrA TIGR01188
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ...
 10-214 9.72e-28

daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]


Pssm-ID: 130256 [Multi-domain]  Cd Length: 302  Bit Score: 111.71  E-value: 9.72e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGklladY----KPKELAQIMAVLPQKT-- 83
Cdd:TIGR01188   3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAG-----YdvvrEPRKVRRSIGIVPQYAsv 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  84 DQAFTFTvEETVAFGRYpfqTGLFRQqtEKDEAIvQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:TIGR01188  78 DEDLTGR-ENLEMMGRL---YGLPKD--EAEERA-EELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE 150

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1119636415 164 PTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:TIGR01188 151 PTTGLDPRTRRAIWDYIRAL-KEEGVTILLTTHYMEEADKLCDRIAIIDHG 200
cbiO PRK13632
cobalt transporter ATP-binding subunit; Provisional
 2-231 1.10e-27

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 237452 [Multi-domain]  Cd Length: 271  Bit Score: 110.85  E-value: 1.10e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSR--LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVL 79
Cdd:PRK13632    9 KVENVSFSYPNSEnnALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGII 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 PQKTDQAFT-FTVEETVAFG----RYPFqtglfrqqtEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQ 154
Cdd:PRK13632   89 FQNPDNQFIgATVEDDIAFGlenkKVPP---------KKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 155 QPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLyCDELMFMKNGTAGPKQKPEYAVTEQSI 231
Cdd:PRK13632  160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAIL-ADKVIVFSEGKLIAQGKPKEILNNKEI 235
ABC_PstB_phosphate_transporter cd03260
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ...
 1-229 1.45e-27

ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).


Pssm-ID: 213227 [Multi-domain]  Cd Length: 227  Bit Score: 109.58  E-value: 1.45e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTT------LLHLLTGTLPAkEGRVYLAGKLLA--DYKPKEL 72
Cdd:cd03260     1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTllrllnRLNDLIPGAPD-EGEVLLDGKDIYdlDVDVLEL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  73 AQIMAVLPQKTDqAFTFTVEETVAFGrypfqtglFRQQTEKD----EAIVQEAMEQTG----VADFAQKpiRELSGGEQQ 144
Cdd:cd03260    80 RRRVGMVFQKPN-PFPGSIYDNVAYG--------LRLHGIKLkeelDERVEEALRKAAlwdeVKDRLHA--LGLSGGQQQ 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 145 RVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSvfHDLNTASLYCDELMFMKNGtagpkQKPEY 224
Cdd:cd03260   149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVT--HNMQQAARVADRTAFLLNG-----RLVEF 221


                  ....*
gi 1119636415 225 AVTEQ 229
Cdd:cd03260   222 GPTEQ 226
ABC_HisP_GlnQ cd03262
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ...
 2-214 1.48e-27

ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.


Pssm-ID: 213229 [Multi-domain]  Cd Length: 213  Bit Score: 109.16  E-value: 1.48e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKpKELAQIMavlpQ 81
Cdd:cd03262     2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDK-KNINELR----Q 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KTD---QAFTF----TVEETVAFGrypfQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQ 154
Cdd:cd03262    77 KVGmvfQQFNLfphlTVLENITLA----PIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM 152

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 155 QPRILFLDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03262   153 NPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDG 211
potA PRK09452
spermidine/putrescine ABC transporter ATP-binding protein PotA;
5-214 1.71e-27

spermidine/putrescine ABC transporter ATP-binding protein PotA;


Pssm-ID: 236523 [Multi-domain]  Cd Length: 375  Bit Score: 112.73  E-value: 1.71e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   5 GLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE-----LAQIMAVL 79
Cdd:PRK09452   19 GISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENrhvntVFQSYALF 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 PQktdqaftFTVEETVAFGrypfqtgLFRQQTEKDE--AIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPR 157
Cdd:PRK09452   99 PH-------MTVFENVAFG-------LRMQKTPAAEitPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 158 ILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK09452  165 VLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDG 221
ABC_DrrA cd03265
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ...
 3-214 1.81e-27

Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213232 [Multi-domain]  Cd Length: 220  Bit Score: 109.00  E-value: 1.81e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGkLLADYKPKELAQIMAVLPQK 82
Cdd:cd03265     3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAG-HDVVREPREVRRRIGIVFQD 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 --TDQAFTFTvEETVAFGR-YPFQTGLFRQQTEkdeaivqEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRIL 159
Cdd:cd03265    82 lsVDDELTGW-ENLYIHARlYGVPGAERRERID-------ELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVL 153

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 160 FLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03265   154 FLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHG 208
cbiO PRK13647
cobalt transporter ATP-binding subunit; Provisional
 4-214 1.88e-27

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 237457 [Multi-domain]  Cd Length: 274  Bit Score: 110.21  E-value: 1.88e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGD-SRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKEL-AQIMAVLPQ 81
Cdd:PRK13647    8 EDLHFRYKDgTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVrSKVGLVFQD 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KTDQAFTFTVEETVAFGryPFQTGLFRQQTEKDeaiVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFL 161
Cdd:PRK13647   88 PDDQVFSSTVWDDVAFG--PVNMGLDKDEVERR---VEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK13647  163 DEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEG 214
CydD COG4988
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ...
 3-214 1.96e-27

ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444012 [Multi-domain]  Cd Length: 563  Bit Score: 114.86  E-value: 1.96e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSR-LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQ 81
Cdd:COG4988   339 LEDVSFSYPGGRpALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRRQIAWVPQ 418

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KTdQAFTFTVEETVAFGRypfqtglfrqqTEKDEAIVQEAMEQTGVADFAQK-------PIRE----LSGGEQQRVYLAQ 150
Cdd:COG4988   419 NP-YLFAGTIRENLRLGR-----------PDASDEELEAALEAAGLDEFVAAlpdgldtPLGEggrgLSGGQAQRLALAR 486

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 151 ALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTResGLAAVSVFHDLNTASLyCDELMFMKNG 214
Cdd:COG4988   487 ALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAK--GRTVILITHRLALLAQ-ADRILVLDDG 547
TauB COG1116
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ...
 11-214 2.86e-27

ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 440733 [Multi-domain]  Cd Length: 260  Bit Score: 109.41  E-value: 2.86e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSRLINNVSLTVEKGEFLGILGPNGSGK----------TtllhlltgtlPAKEGRVYLAGKLLADYKPKelaqiMAVLP 80
Cdd:COG1116    22 GGVTALDDVSLTVAAGEFVALVGPSGCGKstllrliaglE----------KPTSGEVLVDGKPVTGPGPD-----RGVVF 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKtdqaFT----FTVEETVAFGrypfqtgLFRQQTEKDEA--IVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQ 154
Cdd:COG1116    87 QE----PAllpwLTVLDNVALG-------LELRGVPKAERreRARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALAN 155

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1119636415 155 QPRILFLDEPtnF--LD----LAYQKDLLDLIkrltRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:COG1116   156 DPEVLLMDEP--FgaLDaltrERLQDELLRLW----QETGKTVLFVTHDVDEAVFLADRVVVLSAR 215
PRK03695 PRK03695
vitamin B12-transporter ATPase; Provisional
 12-248 3.03e-27

vitamin B12-transporter ATPase; Provisional


Pssm-ID: 235150 [Multi-domain]  Cd Length: 248  Bit Score: 109.25  E-value: 3.03e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  12 DSRLINnVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAkEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAFTFTV 91
Cdd:PRK03695    9 STRLGP-LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  92 EETVAFGRYPfqtglfRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQ-------QPRILFLDEP 164
Cdd:PRK03695   87 FQYLTLHQPD------KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQvwpdinpAGQLLLLDEP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 165 TNFLDLAYQKDLLDLIKRLTReSGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPEYAVTEQSIKAVYDTDVTALVH 244
Cdd:PRK03695  161 MNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVFGVNFRRLDV 239


                  ....
gi 1119636415 245 QSSP 248
Cdd:PRK03695  240 EGHP 243
ABC_OpuCA_Osmoprotection cd03295
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ...
 4-215 3.23e-27

ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213262 [Multi-domain]  Cd Length: 242  Bit Score: 108.93  E-value: 3.23e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSR-LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQK 82
Cdd:cd03295     4 ENVTKRYGGGKkAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQ 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 TDQAFTFTVEETVAFgrYPfqtGLFRQQTEKDEAIVQEAMEQTGV--ADFAQKPIRELSGGEQQRVYLAQALAQQPRILF 160
Cdd:cd03295    84 IGLFPHMTVEENIAL--VP---KLLKWPKEKIRERADELLALVGLdpAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 161 LDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:cd03295   159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGE 213
FtsE COG2884
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
4-186 9.70e-27

Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442130 [Multi-domain]  Cd Length: 223  Bit Score: 107.06  E-value: 9.70e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLI-NNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELA----QIMAV 78
Cdd:COG2884     5 ENVSKRYPGGREAlSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPylrrRIGVV 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 ------LPQKTdqaftftVEETVAFgryPFQ-TGLFRQQTEKDeaiVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQA 151
Cdd:COG2884    85 fqdfrlLPDRT-------VYENVAL---PLRvTGKSRKEIRRR---VREVLDLVGLSDKAKALPHELSGGEQQRVAIARA 151

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1119636415 152 LAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRE 186
Cdd:COG2884   152 LVNRPELLLADEPTGNLDPETSWEIMELLEEINRR 186
ThiQ COG3840
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
10-216 1.33e-26

ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];


Pssm-ID: 443051 [Multi-domain]  Cd Length: 232  Bit Score: 106.76  E-value: 1.33e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLinNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKElaQIMAVLPQKTDqafTF 89
Cdd:COG3840    11 YGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAE--RPVSMLFQENN---LF 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  90 ---TVEETVAFGRYPfqtGLfrQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:COG3840    84 phlTVAQNIGLGLRP---GL--KLTAEQRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFS 158

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1119636415 167 FLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTA 216
Cdd:COG3840   159 ALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRI 208
ABC_drug_resistance_like cd03264
ABC-type multidrug transport system, ATPase component; The biological function of this family ...
 2-214 1.36e-26

ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213231 [Multi-domain]  Cd Length: 211  Bit Score: 106.12  E-value: 1.36e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGeFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYkPKELAQIMAVLPQ 81
Cdd:cd03264     2 QLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQ-PQKLRRRIGYLPQ 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KTDQAFTFTVEETVAFgrypfQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFL 161
Cdd:cd03264    80 EFGVYPNFTVREFLDY-----IAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIV 154

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLTrESGLAAVSVfHDLNTASLYCDELMFMKNG 214
Cdd:cd03264   155 DEPTAGLDPEERIRFRNLLSELG-EDRIVILST-HIVEDVESLCNQVAVLNKG 205
ABCC_MRP_Like cd03228
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ...
 4-214 1.69e-26

ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213195 [Multi-domain]  Cd Length: 171  Bit Score: 104.77  E-value: 1.69e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDS--RLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQ 81
Cdd:cd03228     4 KNVSFSYPGRpkPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQ 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KTdQAFTFTVEETVafgrypfqtglfrqqtekdeaivqeameqtgvadfaqkpireLSGGEQQRVYLAQALAQQPRILFL 161
Cdd:cd03228    84 DP-FLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPILIL 120

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSvfHDLNTASLyCDELMFMKNG 214
Cdd:cd03228   121 DEATSALDPETEALILEALRALAKGKTVIVIA--HRLSTIRD-ADRIIVLDDG 170
ABC_Pro_Gly_Betaine cd03294
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ...
 16-214 2.01e-26

ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213261 [Multi-domain]  Cd Length: 269  Bit Score: 107.34  E-value: 2.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI-----------MAVLPQKTd 84
Cdd:cd03294    40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELrrkkismvfqsFALLPHRT- 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  85 qaftftVEETVAFGrYPFQtGLFRQQTEkdeAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEP 164
Cdd:cd03294   119 ------VLENVAFG-LEVQ-GVPRAERE---ERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA 187

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1119636415 165 TNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03294   188 FSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDG 237
CydC COG4987
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ...
 2-215 2.03e-26

ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444011 [Multi-domain]  Cd Length: 569  Bit Score: 111.78  E-value: 2.03e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSR--LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVL 79
Cdd:COG4987   335 ELEDVSFRYPGAGrpVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRRIAVV 414

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 PQKTDqAFTFTVEETVAFGRyPfqtglfrqqtEKDEAIVQEAMEQTGVADFAQK-------PIRE----LSGGEQQRVYL 148
Cdd:COG4987   415 PQRPH-LFDTTLRENLRLAR-P----------DATDEELWAALERVGLGDWLAAlpdgldtWLGEggrrLSGGERRRLAL 482

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 149 AQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSvfHDLNTASLyCDELMFMKNGT 215
Cdd:COG4987   483 ARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTVLLIT--HRLAGLER-MDRILVLEDGR 546
ABC_CysA_sulfate_importer cd03296
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ...
 4-245 3.54e-26

ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213263 [Multi-domain]  Cd Length: 239  Bit Score: 105.88  E-value: 3.54e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE-----LAQIMAV 78
Cdd:cd03296     6 RNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQErnvgfVFQHYAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 LPQktdqaftFTVEETVAFGrypFQTGLFRQQTEKDE--AIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQP 156
Cdd:cd03296    86 FRH-------MTVFDNVAFG---LRVKPRSERPPEAEirAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEP 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGtagpkqkpeyaVTEQ--SIKAV 234
Cdd:cd03296   156 KVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKG-----------RIEQvgTPDEV 224

                         250
                  ....*....|.
gi 1119636415 235 YDTDVTALVHQ 245
Cdd:cd03296   225 YDHPASPFVYS 235
ABC_MalK_N cd03301
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ...
 1-214 4.00e-26

The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.


Pssm-ID: 213268 [Multi-domain]  Cd Length: 213  Bit Score: 105.03  E-value: 4.00e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE--LA---QI 75
Cdd:cd03301     1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDrdIAmvfQN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  76 MAVLPQKtdqaftfTVEETVAFgrypfqtGLFRQQTEKDE--AIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALA 153
Cdd:cd03301    81 YALYPHM-------TVYDNIAF-------GLKLRKVPKDEidERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIV 146

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119636415 154 QQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03301   147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDG 207
ABC_MetN_methionine_transporter cd03258
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ...
 6-214 5.19e-26

ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213225 [Multi-domain]  Cd Length: 233  Bit Score: 105.36  E-value: 5.19e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   6 LSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI---MAVLPQK 82
Cdd:cd03258    11 FGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKArrrIGMIFQH 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 TDQAFTFTVEETVAfgrYPFQtgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLD 162
Cdd:cd03258    91 FNLLSSRTVFENVA---LPLE--IAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCD 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 163 EPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03258   166 EATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKG 217
FtsE TIGR02673
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ...
 11-198 7.16e-26

cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]


Pssm-ID: 131721 [Multi-domain]  Cd Length: 214  Bit Score: 104.25  E-value: 7.16e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI---MAVLPQKTDQAF 87
Cdd:TIGR02673  13 GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLrrrIGVVFQDFRLLP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  88 TFTVEETVAFgryPFQtgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNF 167
Cdd:TIGR02673  93 DRTVYENVAL---PLE--VRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGN 167

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1119636415 168 LDLAYQKDLLDLIKRLTReSGLAAVSVFHDL 198
Cdd:TIGR02673 168 LDPDLSERILDLLKRLNK-RGTTVIVATHDL 197
cbiO PRK13648
cobalt transporter ATP-binding subunit; Provisional
 16-223 7.36e-26

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 184207 [Multi-domain]  Cd Length: 269  Bit Score: 105.99  E-value: 7.36e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAFT-FTVEET 94
Cdd:PRK13648   25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVgSIVKYD 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  95 VAFGRYPFQTglfrqQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQK 174
Cdd:PRK13648  105 VAFGLENHAV-----PYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1119636415 175 DLLDLIKRLTRESGLAAVSVFHDLnTASLYCDELMFMKNGTAGPKQKPE 223
Cdd:PRK13648  180 NLLDLVRKVKSEHNITIISITHDL-SEAMEADHVIVMNKGTVYKEGTPT 227
nickel_nikE TIGR02769
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ...
 5-214 1.91e-25

nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131816 [Multi-domain]  Cd Length: 265  Bit Score: 104.50  E-value: 1.91e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   5 GLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQ---------- 74
Cdd:TIGR02769  16 GLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAfrrdvqlvfq 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  75 --IMAVLPQKTdqaftftVEETVafgRYPFQTGLFRQQTEKDEAIvQEAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQA 151
Cdd:TIGR02769  96 dsPSAVNPRMT-------VRQII---GEPLRHLTSLDESEQKARI-AELLDMVGLrSEDADKLPRQLSGGQLQRINIARA 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119636415 152 LAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:TIGR02769 165 LAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227
ABC_putative_ATPase cd03269
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ...
 1-216 2.02e-25

ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213236 [Multi-domain]  Cd Length: 210  Bit Score: 103.13  E-value: 2.02e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTgtlpakegRVYL--AGKLLADYKPkelaqimav 78
Cdd:cd03269     1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMIL--------GIILpdSGEVLFDGKP--------- 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 lpqktdqaFTFTVEETvaFGRYPFQTGLFRQQTEKDEAI----------------VQEAMEQTGVADFAQKPIRELSGGE 142
Cdd:cd03269    64 --------LDIAARNR--IGYLPEERGLYPKMKVIDQLVylaqlkglkkeearrrIDEWLERLELSEYANKRVEELSKGN 133

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 143 QQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNGTA 216
Cdd:cd03269   134 QQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL-ARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206
PhnT2 TIGR03265
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ...
 1-214 2.38e-25

putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274496 [Multi-domain]  Cd Length: 353  Bit Score: 106.27  E-value: 2.38e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKlladykpkelaQIMAVLP 80
Cdd:TIGR03265   5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGR-----------DITRLPP 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTF---------TVEETVAFGrypfqtgLFRQQTEKDEAI--VQEAMEQTGVADFAQKPIRELSGGEQQRVYLA 149
Cdd:TIGR03265  74 QKRDYGIVFqsyalfpnlTVADNIAYG-------LKNRGMGRAEVAerVAELLDLVGLPGSERKYPGQLSGGQQQRVALA 146

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 150 QALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:TIGR03265 147 RALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHG 211
PRK09984 PRK09984
phosphonate ABC transporter ATP-binding protein;
1-214 3.73e-25

phosphonate ABC transporter ATP-binding protein;


Pssm-ID: 182182 [Multi-domain]  Cd Length: 262  Bit Score: 103.94  E-value: 3.73e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLT---GTLPAKEGRVYL-------AGKLLADYKpK 70
Cdd:PRK09984    5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSgliTGDKSAGSHIELlgrtvqrEGRLARDIR-K 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  71 ELAQIMAVLpQKTDQAFTFTVEETV---AFGRYPFQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVY 147
Cdd:PRK09984   84 SRANTGYIF-QQFNLVNRLSVLENVligALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 148 LAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK09984  163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229
ABC_subfamily_A cd03263
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ...
 1-215 3.74e-25

ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.


Pssm-ID: 213230 [Multi-domain]  Cd Length: 220  Bit Score: 102.58  E-value: 3.74e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLI--NNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLAdYKPKELAQIMAV 78
Cdd:cd03263     1 LQIRNLTKTYKKGTKPavDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR-TDRKAARQSLGY 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 LPQKtDQAFT-FTVEETVAF-GRYpfqTGLFRQQtekDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQP 156
Cdd:cd03263    80 CPQF-DALFDeLTVREHLRFyARL---KGLPKSE---IKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGP 152

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLTRESglaavSVF---HDLNTASLYCDELMFMKNGT 215
Cdd:cd03263   153 SVLLLDEPTSGLDPASRRAIWDLILEVRKGR-----SIIlttHSMDEAEALCDRIAIMSDGK 209
ABC_NatA_like cd03267
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ...
 10-215 4.21e-25

ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.


Pssm-ID: 213234 [Multi-domain]  Cd Length: 236  Bit Score: 102.80  E-value: 4.21e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAFTF 89
Cdd:cd03267    31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  90 TVEETVAFGRYPFQTGLFRQQTEKDEaiVQEAMEqtgVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLD 169
Cdd:cd03267   111 PVIDSFYLLAAIYDLPPARFKKRLDE--LSELLD---LEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1119636415 170 LAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:cd03267   186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGR 231
ntrCD TIGR01184
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ...
 16-216 5.53e-25

nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]


Pssm-ID: 130252 [Multi-domain]  Cd Length: 230  Bit Score: 102.54  E-value: 5.53e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELA--QIMAVLPQKTdqaftftVEE 93
Cdd:TIGR01184   1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVvfQNYSLLPWLT-------VRE 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  94 TVAFGrypFQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQ 173
Cdd:TIGR01184  74 NIALA---VDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1119636415 174 KDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTA 216
Cdd:TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPA 193
PRK10247 PRK10247
putative ABC transporter ATP-binding protein YbbL; Provisional
 11-199 7.97e-25

putative ABC transporter ATP-binding protein YbbL; Provisional


Pssm-ID: 182331 [Multi-domain]  Cd Length: 225  Bit Score: 101.71  E-value: 7.97e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQkTDQAFTFT 90
Cdd:PRK10247   18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQ-TPTLFGDT 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  91 VEETVAFgryPFQtglFRQQTeKDEAIVQEAMEQTGVAD-FAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLD 169
Cdd:PRK10247   97 VYDNLIF---PWQ---IRNQQ-PDPAIFLDDLERFALPDtILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169

                         170       180       190
                  ....*....|....*....|....*....|
gi 1119636415 170 LAYQKDLLDLIKRLTRESGLAAVSVFHDLN 199
Cdd:PRK10247  170 ESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199
ABCC_Protease_Secretion cd03246
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ...
 4-216 8.07e-25

ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.


Pssm-ID: 213213 [Multi-domain]  Cd Length: 173  Bit Score: 100.37  E-value: 8.07e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSR--LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQ 81
Cdd:cd03246     4 ENVSFRYPGAEppVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQ 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KtDQAFTFTVEETVafgrypfqtglfrqqtekdeaivqeameqtgvadfaqkpireLSGGEQQRVYLAQALAQQPRILFL 161
Cdd:cd03246    84 D-DELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRILVL 120

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLyCDELMFMKNGTA 216
Cdd:cd03246   121 DEPNSHLDVEGERALNQAIAAL-KAAGATRIVIAHRPETLAS-ADRILVLEDGRV 173
ABC_TM1139_LivF_branched cd03224
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ...
 2-214 1.00e-24

ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.


Pssm-ID: 213191 [Multi-domain]  Cd Length: 222  Bit Score: 101.36  E-value: 1.00e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI-MAVLP 80
Cdd:cd03224     2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAgIGYVP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QkTDQAF-TFTVEETvafgrypFQTGLFRQQTEKDEAIVQEAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQALAQQPRI 158
Cdd:cd03224    82 E-GRRIFpELTVEEN-------LLLGAYARRRAKRKARLERVYELFPRlKERRKQLAGTLSGGEQQMLAIARALMSRPKL 153

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 159 LFLDEPTnfLDLA--YQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03224   154 LLLDEPS--EGLApkIVEEIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLERG 208
DppD COG0444
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ...
 11-211 1.01e-24

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440213 [Multi-domain]  Cd Length: 320  Bit Score: 103.59  E-value: 1.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLlhlltgtlpAK------------EGRVYLAGKLLADYKPKELAQI--- 75
Cdd:COG0444    16 GVVKAVDGVSFDVRRGETLGLVGESGSGKSTL---------ARailgllpppgitSGEILFDGEDLLKLSEKELRKIrgr 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  76 -MAVLPQktDqAFT-----FTVEETVAfgrYPFQtgLFRQQTEKD-EAIVQEAMEQTGVADfaqkPIR-------ELSGG 141
Cdd:COG0444    87 eIQMIFQ--D-PMTslnpvMTVGDQIA---EPLR--IHGGLSKAEaRERAIELLERVGLPD----PERrldryphELSGG 154

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 142 EQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFM 211
Cdd:COG0444   155 MRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVM 224
CysA COG1118
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ...
 4-214 1.17e-24

ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 440735 [Multi-domain]  Cd Length: 348  Bit Score: 104.07  E-value: 1.17e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGK-----------TtllhlltgtlpAKEGRVYLAGKLLADYKPkel 72
Cdd:COG1118     6 RNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKttllriiagleT-----------PDSGRIVLNGRDLFTNLP--- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  73 aqimavlPQKTDQAFTF---------TVEETVAFGrypfqtglFRQQTEKDEAIVQEAMEQ------TGVADfaQKPiRE 137
Cdd:COG1118    72 -------PRERRVGFVFqhyalfphmTVAENIAFG--------LRVRPPSKAEIRARVEELlelvqlEGLAD--RYP-SQ 133

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1119636415 138 LSGGEQQRVYLAQALAQQPRILFLDEPtnF--LDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:COG1118   134 LSGGQRQRVALARALAVEPEVLLLDEP--FgaLDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQG 210
CP_lyasePhnK TIGR02323
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ...
 5-214 1.24e-24

phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]


Pssm-ID: 188208 [Multi-domain]  Cd Length: 253  Bit Score: 102.22  E-value: 1.24e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   5 GLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKllaDYKPKELAQI--------- 75
Cdd:TIGR02323   8 GLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMR---SGAELELYQLseaerrrlm 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  76 ---MAVLPQKTDQAFTFTVEETVAFGRYPFQTGL-----FRQQTEKDEAIVQeaMEQTGVADfaqKPiRELSGGEQQRVY 147
Cdd:TIGR02323  85 rteWGFVHQNPRDGLRMRVSAGANIGERLMAIGArhygnIRATAQDWLEEVE--IDPTRIDD---LP-RAFSGGMQQRLQ 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 148 LAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:TIGR02323 159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225
cbiO PRK13640
energy-coupling factor transporter ATPase;
6-223 1.29e-24

energy-coupling factor transporter ATPase;


Pssm-ID: 184200 [Multi-domain]  Cd Length: 282  Bit Score: 102.57  E-value: 1.29e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   6 LSGGYGDSR--LINNVSLTVEKGEFLGILGPNGSGKTTLLHLltgtlpakegrvyLAGKLLADYKPKELAQIMAV-LPQK 82
Cdd:PRK13640   11 VSFTYPDSKkpALNDISFSIPRGSWTALIGHNGSGKSTISKL-------------INGLLLPDDNPNSKITVDGItLTAK 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 T---------------DQAFT-FTVEETVAFGRYpfQTGLFRQQTEKdeaIVQEAMEQTGVADFAQKPIRELSGGEQQRV 146
Cdd:PRK13640   78 TvwdirekvgivfqnpDNQFVgATVGDDVAFGLE--NRAVPRPEMIK---IVRDVLADVGMLDYIDSEPANLSGGQKQRV 152

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 147 YLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLyCDELMFMKNGTAGPKQKPE 223
Cdd:PRK13640  153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPV 228
PRK13633 PRK13633
energy-coupling factor transporter ATPase;
16-214 1.91e-24

energy-coupling factor transporter ATPase;


Pssm-ID: 237453 [Multi-domain]  Cd Length: 280  Bit Score: 102.09  E-value: 1.91e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPK-ELAQIMAVLPQKTDQAFTFT-VEE 93
Cdd:PRK13633   26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLwDIRNKAGMVFQNPDNQIVATiVEE 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  94 TVAFGryPFQTGLfrqQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQ 173
Cdd:PRK13633  106 DVAFG--PENLGI---PPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGR 180

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1119636415 174 KDLLDLIKRLTRESGLAAVSVFHDLNTAsLYCDELMFMKNG 214
Cdd:PRK13633  181 REVVNTIKELNKKYGITIILITHYMEEA-VEADRIIVMDSG 220
ABC_NatA_sodium_exporter cd03266
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ...
 3-214 2.58e-24

ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.


Pssm-ID: 213233 [Multi-domain]  Cd Length: 218  Bit Score: 100.13  E-value: 2.58e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSRL----INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGkLLADYKPKELAQIMAV 78
Cdd:cd03266     4 ADALTKRFRDVKKtvqaVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG-FDVVKEPAEARRRLGF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 LPQKTDQAFTFTVEETVA-FGRYpfqTGLFRQQTEkdeAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPR 157
Cdd:cd03266    83 VSDSTGLYDRLTARENLEyFAGL---YGLKGDELT---ARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 158 ILFLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03266   157 VLLLDEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRG 212
PRK15056 PRK15056
manganese/iron ABC transporter ATP-binding protein;
16-220 2.88e-24

manganese/iron ABC transporter ATP-binding protein;


Pssm-ID: 185016 [Multi-domain]  Cd Length: 272  Bit Score: 101.50  E-value: 2.88e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLAdykpKELAQ-IMAVLPQ--KTDQAFTFTVE 92
Cdd:PRK15056   23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKnLVAYVPQseEVDWSFPVLVE 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  93 ETVAFGRYPfQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAY 172
Cdd:PRK15056   99 DVVMMGRYG-HMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKT 177

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1119636415 173 QKDLLDLIKRLTRESGLAAVSVfHDLNTASLYCDELMFMKnGT---AGPKQ 220
Cdd:PRK15056  178 EARIISLLRELRDEGKTMLVST-HNLGSVTEFCDYTVMVK-GTvlaSGPTE 226
YbbA COG4181
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ...
 19-214 2.88e-24

Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443338 [Multi-domain]  Cd Length: 233  Bit Score: 100.59  E-value: 2.88e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  19 VSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAqimAVLPQKT---DQAF----TFTV 91
Cdd:COG4181    31 ISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDARA---RLRARHVgfvFQSFqllpTLTA 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  92 EETVAfgrypfqTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLA 171
Cdd:COG4181   108 LENVM-------LPLELAGRRDARARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFATEPAILFADEPTGNLDAA 180

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1119636415 172 YQKDLLDLIKRLTRESGLAAVSVFHDLNTASLyCDELMFMKNG 214
Cdd:COG4181   181 TGEQIIDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRLRAG 222
ABC_ThiQ_thiamine_transporter cd03298
ATP-binding cassette domain of the thiamine transport system; Part of the ...
 20-215 4.28e-24

ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213265 [Multi-domain]  Cd Length: 211  Bit Score: 99.49  E-value: 4.28e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  20 SLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKElaQIMAVLPQKTDQAFTFTVEETVAFGR 99
Cdd:cd03298    18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPAD--RPVSMLFQENNLFAHLTVEQNVGLGL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 100 YPfqtGLfrQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDL 179
Cdd:cd03298    96 SP---GL--KLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1119636415 180 IKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:cd03298   171 VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR 206
znuC PRK09544
high-affinity zinc transporter ATPase; Reviewed
 4-209 4.78e-24

high-affinity zinc transporter ATPase; Reviewed


Pssm-ID: 181939 [Multi-domain]  Cd Length: 251  Bit Score: 100.19  E-value: 4.78e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELaQIMAVLPqkt 83
Cdd:PRK09544    8 ENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKL-YLDTTLP--- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  84 dqaftFTVEEtvaFGRypfqtglFRQQTEKDEaiVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:PRK09544   84 -----LTVNR---FLR-------LRPGTKKED--ILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE 146

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1119636415 164 PTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELM 209
Cdd:PRK09544  147 PTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVL 192
YejF COG4172
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ...
 17-214 4.99e-24

ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443332 [Multi-domain]  Cd Length: 533  Bit Score: 104.38  E-value: 4.99e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  17 NNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAkEGRVYLAGKLLADYKPKEL----AQIMAVL--------PQktd 84
Cdd:COG4172   303 DGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIPS-EGEIRFDGQDLDGLSRRALrplrRRMQVVFqdpfgslsPR--- 378

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  85 qaftFTVEETVAFGRYPFQTGLFRQQTEkdeAIVQEAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:COG4172   379 ----MTVGQIIAEGLRVHGPGLSAAERR---ARVAEALEEVGLdPAARHRYPHEFSGGQRQRIAIARALILEPKLLVLDE 451

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1119636415 164 PTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:COG4172   452 PTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDG 502
ABC_BcrA_bacitracin_resist cd03268
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ...
 2-215 5.34e-24

ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.


Pssm-ID: 213235 [Multi-domain]  Cd Length: 208  Bit Score: 98.83  E-value: 5.34e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKeLAQIMAVLpq 81
Cdd:cd03268     2 KTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEA-LRRIGALI-- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 ktdqaftftveETVAFgrYPFQTG-----LFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQP 156
Cdd:cd03268    79 -----------EAPGF--YPNLTArenlrLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNP 145

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLtRESGlaaVSVF---HDLNTASLYCDELMFMKNGT 215
Cdd:cd03268   146 DLLILDEPTNGLDPDGIKELRELILSL-RDQG---ITVLissHLLSEIQKVADRIGIINKGK 203
cbiO PRK13637
energy-coupling factor transporter ATPase;
1-215 5.70e-24

energy-coupling factor transporter ATPase;


Pssm-ID: 237455 [Multi-domain]  Cd Length: 287  Bit Score: 100.89  E-value: 5.70e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYG-----DSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPK--ELA 73
Cdd:PRK13637    3 IKIENLTHIYMegtpfEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKlsDIR 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  74 QIMAVLPQKTD-QAFTFTVEETVAFGryPFQTGLFRQQTEKDeaiVQEAMEQTGVA--DFAQKPIRELSGGEQQRVYLAQ 150
Cdd:PRK13637   83 KKVGLVFQYPEyQLFEETIEKDIAFG--PINLGLSEEEIENR---VKRAMNIVGLDyeDYKDKSPFELSGGQKRRVAIAG 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 151 ALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:PRK13637  158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGK 222
MalK COG3839
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ...
 4-197 7.70e-24

ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];


Pssm-ID: 443050 [Multi-domain]  Cd Length: 352  Bit Score: 101.69  E-value: 7.70e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKttllhlltgtlPAKEGRVYLAGKLLADYKPKE--LAqiM----- 76
Cdd:COG3839     7 ENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKstllrmiagleDPTSGEILIGGRDVTDLPPKDrnIA--Mvfqsy 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  77 AVLPQKtdqaftfTVEETVAFgrypfqtGLFRQQTEKDE--AIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQ 154
Cdd:COG3839    85 ALYPHM-------TVYENIAF-------PLKLRKVPKAEidRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVR 150

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1119636415 155 QPRILFLDEP-TNfLDLAYQKDLLDLIKRLTRESGLAAVSVFHD 197
Cdd:COG3839   151 EPKVFLLDEPlSN-LDAKLRVEMRAEIKRLHRRLGTTTIYVTHD 193
CydC TIGR02868
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ...
 1-198 1.09e-23

thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.


Pssm-ID: 274331 [Multi-domain]  Cd Length: 530  Bit Score: 103.59  E-value: 1.09e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGY-GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVL 79
Cdd:TIGR02868 335 LELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVC 414

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 PQKTdQAFTFTVEETVAFGRypfqtglfrqqTEKDEAIVQEAMEQTGVADFAQK-------PIRE----LSGGEQQRVYL 148
Cdd:TIGR02868 415 AQDA-HLFDTTVRENLRLAR-----------PDATDEELWAALERVGLADWLRAlpdgldtVLGEggarLSGGERQRLAL 482

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1119636415 149 AQALAQQPRILFLDEPTNFLDLAYQKDLLDLIkrLTRESGLAAVSVFHDL 198
Cdd:TIGR02868 483 ARALLADAPILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLITHHL 530
CydD TIGR02857
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ...
 3-204 2.58e-23

thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD


Pssm-ID: 274323 [Multi-domain]  Cd Length: 529  Bit Score: 102.36  E-value: 2.58e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSR-LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQ 81
Cdd:TIGR02857 324 FSGVSVAYPGRRpALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQ 403

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 kTDQAFTFTVEETVAFGRypfqtglfrqqTEKDEAIVQEAMEQTGVADFAQ-------KPI----RELSGGEQQRVYLAQ 150
Cdd:TIGR02857 404 -HPFLFAGTIAENIRLAR-----------PDASDAEIREALERAGLDEFVAalpqgldTPIgeggAGLSGGQAQRLALAR 471

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 151 ALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTResGLAAVSVFHDLNTASLY 204
Cdd:TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALAALA 523
tauB PRK11248
taurine ABC transporter ATP-binding subunit;
1-214 3.32e-23

taurine ABC transporter ATP-binding subunit;


Pssm-ID: 183056 [Multi-domain]  Cd Length: 255  Bit Score: 98.23  E-value: 3.32e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE--LAQIMAV 78
Cdd:PRK11248    2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERgvVFQNEGL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 LPQKTdqaftftVEETVAFGrypFQ-TGLFRQQTEkdeAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPR 157
Cdd:PRK11248   82 LPWRN-------VQDNVAFG---LQlAGVEKMQRL---EIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQ 148

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 158 ILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK11248  149 LLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG 205
cbiO PRK13652
cobalt transporter ATP-binding subunit; Provisional
 11-214 4.32e-23

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 172200 [Multi-domain]  Cd Length: 277  Bit Score: 98.34  E-value: 4.32e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTD-QAFTF 89
Cdd:PRK13652   15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDdQIFSP 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  90 TVEETVAFGryPFQTGLfrqQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLD 169
Cdd:PRK13652   95 TVEQDIAFG--PINLGL---DEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLD 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1119636415 170 LAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK13652  170 PQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKG 214
GlnQ COG1126
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ...
 2-214 4.56e-23

ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 440743 [Multi-domain]  Cd Length: 239  Bit Score: 97.37  E-value: 4.56e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKttllhlltgtlPAKEGRVYLAGKLLADyKPKELAQI-----M 76
Cdd:COG1126     3 EIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKstllrcinlleEPDSGTITVDGEDLTD-SKKDINKLrrkvgM 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  77 aVLpqktdQAFT-F---TVEETVAFGryPFQTglfrQQTEKDEAIvQEAME---QTGVADFAQKPIRELSGGEQQRVYLA 149
Cdd:COG1126    82 -VF-----QQFNlFphlTVLENVTLA--PIKV----KKMSKAEAE-ERAMElleRVGLADKADAYPAQLSGGQQQRVAIA 148

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 150 QALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:COG1126   149 RALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGG 212
ABCC_bacteriocin_exporters cd03245
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ...
 18-214 4.94e-23

ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.


Pssm-ID: 213212 [Multi-domain]  Cd Length: 220  Bit Score: 96.50  E-value: 4.94e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  18 NVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTdQAFTFTVEETVAF 97
Cdd:cd03245    22 NVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDV-TLFYGTLRDNITL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  98 GRyPFQTglfrqqtekDEAIVqEAMEQTGVADFAQK-------PIRE----LSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:cd03245   101 GA-PLAD---------DERIL-RAAELAGVTDFVNKhpngldlQIGErgrgLSGGQRQAVALARALLNDPPILLLDEPTS 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1119636415 167 FLDLAYQKDLLDLIKRLTRESGLaaVSVFHDLNTASLyCDELMFMKNG 214
Cdd:cd03245   170 AMDMNSEERLKERLRQLLGDKTL--IIITHRPSLLDL-VDRIIVMDSG 214
YnjD COG4136
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ...
 10-201 5.40e-23

ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];


Pssm-ID: 443311 [Multi-domain]  Cd Length: 211  Bit Score: 96.40  E-value: 5.40e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAK---EGRVYLAGKLLADyKPKELAQImAVLPQkTDQA 86
Cdd:COG4136    11 LGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAfsaSGEVLLNGRRLTA-LPAEQRRI-GILFQ-DDLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  87 FT-FTVEETVAFGRYPFQTGLFRQQTekdeaiVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPT 165
Cdd:COG4136    88 FPhLSVGENLAFALPPTIGRAQRRAR------VEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPF 161

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1119636415 166 NFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTA 201
Cdd:COG4136   162 SKLDAALRAQFREFVFEQIRQRGIPALLVTHDEEDA 197
MdlB COG1132
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
4-214 6.38e-23

ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];


Pssm-ID: 440747 [Multi-domain]  Cd Length: 579  Bit Score: 101.39  E-value: 6.38e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSR-LINNVSLTVEKGEFLGILGPNGSGKttllhlltgtlPAKEGRVYLAGKLLADYKPKELAQIMAVLPQK 82
Cdd:COG1132   343 ENVSFSYPGDRpVLKDISLTIPPGETVALVGPSGSGKstlvnlllrfyDPTSGRILIDGVDIRDLTLESLRRQIGVVPQD 422

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 TdQAFTFTVEETVAFGRypfqtglfrqqTEKDEAIVQEAMEQTGVADFAQK-------PIRE----LSGGEQQRVYLAQA 151
Cdd:COG1132   423 T-FLFSGTIRENIRYGR-----------PDATDEEVEEAAKAAQAHEFIEAlpdgydtVVGErgvnLSGGQRQRIAIARA 490

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119636415 152 LAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTResGLAAVSVFHDLNTASLyCDELMFMKNG 214
Cdd:COG1132   491 LLKDPPILILDEATSALDTETEALIQEALERLMK--GRTTIVIAHRLSTIRN-ADRILVLDDG 550
PRK13536 PRK13536
nodulation factor ABC transporter ATP-binding protein NodI;
5-229 7.53e-23

nodulation factor ABC transporter ATP-binding protein NodI;


Pssm-ID: 237419 [Multi-domain]  Cd Length: 340  Bit Score: 98.75  E-value: 7.53e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   5 GLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQImAVLPQKTD 84
Cdd:PRK13536   46 GVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI-GVVPQFDN 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  85 QAFTFTVEET-VAFGRYpfqtglFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:PRK13536  125 LDLEFTVRENlLVFGRY------FGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDE 198

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119636415 164 PTNFLD-----LAYQKdLLDLIKRltresGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPEYAVTEQ 229
Cdd:PRK13536  199 PTTGLDpharhLIWER-LRSLLAR-----GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEH 263
phnK PRK11701
phosphonate C-P lyase system protein PhnK; Provisional
 1-214 7.69e-23

phosphonate C-P lyase system protein PhnK; Provisional


Pssm-ID: 183280 [Multi-domain]  Cd Length: 258  Bit Score: 96.92  E-value: 7.69e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKllaDYKPKELAQIMAV-- 78
Cdd:PRK11701    7 LSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMR---DGQLRDLYALSEAer 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 -LPQKTDQAFtftVEEtvafgrYPFQtGLFRQQT------EKDEA--------IVQEAMEQTGVADFAQKPI----RELS 139
Cdd:PRK11701   84 rRLLRTEWGF---VHQ------HPRD-GLRMQVSaggnigERLMAvgarhygdIRATAGDWLERVEIDAARIddlpTTFS 153

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 140 GGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK11701  154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQG 228
cbiO PRK13644
energy-coupling factor transporter ATPase;
1-232 1.36e-22

energy-coupling factor transporter ATPase;


Pssm-ID: 106587 [Multi-domain]  Cd Length: 274  Bit Score: 96.98  E-value: 1.36e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGD-SRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADY-KPKELAQIMAV 78
Cdd:PRK13644    2 IRLENVSYSYPDgTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFsKLQGIRKLVGI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 LPQKTDQAFT-FTVEETVAFGryPFQTGLFRQQTEKdeaIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPR 157
Cdd:PRK13644   82 VFQNPETQFVgRTVEEDLAFG--PENLCLPPIEIRK---RVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPE 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 158 ILFLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLyCDELMFMKNGTAGPKQKPEYAVTEQSIK 232
Cdd:PRK13644  157 CLIFDEVTSMLDPDSGIAVLERIKKL-HEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENVLSDVSLQ 229
L_ocin_972_ABC TIGR03608
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ...
 4-211 1.64e-22

putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]


Pssm-ID: 188353 [Multi-domain]  Cd Length: 206  Bit Score: 94.99  E-value: 1.64e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQImavlpQKT 83
Cdd:TIGR03608   2 KNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKF-----RRE 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  84 DQAFTF---------TVEETVAFGrypfQTGLFRQQTEKDEAIVqEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQ 154
Cdd:TIGR03608  77 KLGYLFqnfalieneTVEENLDLG----LKYKKLSKKEKREKKK-EALEKVGLNLKLKQKIYELSGGEQQRVALARAILK 151

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 155 QPRILFLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLyCDELMFM 211
Cdd:TIGR03608 152 PPPLILADEPTGSLDPKNRDEVLDLLLEL-NDEGKTIIIVTHDPEVAKQ-ADRVIEL 206
ABC_ModC_molybdenum_transporter cd03297
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ...
 18-214 3.21e-22

ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213264 [Multi-domain]  Cd Length: 214  Bit Score: 94.28  E-value: 3.21e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  18 NVSLTVEkGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKelaqiMAVLPQKTDQAFTF-------- 89
Cdd:cd03297    16 KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKK-----INLPPQQRKIGLVFqqyalfph 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  90 -TVEETVAFGrypfqtgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFL 168
Cdd:cd03297    90 lNVRENLAFG-------LKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1119636415 169 DLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03297   163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDG 208
ABC_YhbG cd03218
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ...
 2-189 4.59e-22

ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.


Pssm-ID: 213185 [Multi-domain]  Cd Length: 232  Bit Score: 94.15  E-value: 4.59e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI-MAVLP 80
Cdd:cd03218     2 RAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLgIGYLP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QktdQAFTF---TVEETVAfgrypfqtgLFRQQTEKDEAIVQEAMEQTgVADFAQKPIRE-----LSGGEQQRVYLAQAL 152
Cdd:cd03218    82 Q---EASIFrklTVEENIL---------AVLEIRGLSKKEREEKLEEL-LEEFHITHLRKskassLSGGERRRVEIARAL 148

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1119636415 153 AQQPRILFLDEPTNFLDLAYQKDLLDLIKRLtRESGL 189
Cdd:cd03218   149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL-KDRGI 184
glnQ PRK09493
glutamine ABC transporter ATP-binding protein GlnQ;
10-214 9.96e-22

glutamine ABC transporter ATP-binding protein GlnQ;


Pssm-ID: 181906 [Multi-domain]  Cd Length: 240  Bit Score: 93.62  E-value: 9.96e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE---------LAQIMAVLP 80
Cdd:PRK09493   11 FGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDErlirqeagmVFQQFYLFP 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QktdqaftFTVEETVAFGryPFQT-GLFRQQTEKdeaIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRIL 159
Cdd:PRK09493   91 H-------LTALENVMFG--PLRVrGASKEEAEK---QARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLM 158

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 160 FLDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK09493  159 LFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKG 212
LivF COG0410
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ...
 2-190 1.37e-21

ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];


Pssm-ID: 440179 [Multi-domain]  Cd Length: 236  Bit Score: 93.12  E-value: 1.37e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI-MAVLP 80
Cdd:COG0410     5 EVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLgIGYVP 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QkTDQAF-TFTVEETVAFGRYPfqtglfRQQTEKDEAIVQEAMEQtgvadFaqkPI-RE--------LSGGEQQRVYLAQ 150
Cdd:COG0410    85 E-GRRIFpSLTVEENLLLGAYA------RRDRAEVRADLERVYEL-----F---PRlKErrrqragtLSGGEQQMLAIGR 149

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1119636415 151 ALAQQPRILFLDEPTnfLDLA--YQKDLLDLIKRLtRESGLA 190
Cdd:COG0410   150 ALMSRPKLLLLDEPS--LGLAplIVEEIFEIIRRL-NREGVT 188
potG PRK11607
putrescine ABC transporter ATP-binding subunit PotG;
16-214 1.80e-21

putrescine ABC transporter ATP-binding subunit PotG;


Pssm-ID: 183226 [Multi-domain]  Cd Length: 377  Bit Score: 95.29  E-value: 1.80e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE-----LAQIMAVLPQktdqaftFT 90
Cdd:PRK11607   35 VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQrpinmMFQSYALFPH-------MT 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  91 VEETVAFGrypfqtgLFRQQTEKDE--AIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFL 168
Cdd:PRK11607  108 VEQNIAFG-------LKQDKLPKAEiaSRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL 180

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1119636415 169 DLA----YQKDLLDLIKRLtresGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK11607  181 DKKlrdrMQLEVVDILERV----GVTCVMVTHDQEEAMTMAGRIAIMNRG 226
cbiO PRK13642
energy-coupling factor transporter ATPase;
12-241 3.00e-21

energy-coupling factor transporter ATPase;


Pssm-ID: 184202 [Multi-domain]  Cd Length: 277  Bit Score: 93.23  E-value: 3.00e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  12 DSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAFT-FT 90
Cdd:PRK13642   19 DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVgAT 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  91 VEETVAFGrypfqtgLFRQQTEKDEAI--VQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFL 168
Cdd:PRK13642   99 VEDDVAFG-------MENQGIPREEMIkrVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSML 171

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 169 DLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASlYCDELMFMKNGTAGPKQKPE--YAVTEQSIKAVYDTDVTA 241
Cdd:PRK13642  172 DPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSelFATSEDMVEIGLDVPFSS 245
PRK13651 PRK13651
cobalt transporter ATP-binding subunit; Provisional
 16-214 3.28e-21

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 184210 [Multi-domain]  Cd Length: 305  Bit Score: 93.61  E-value: 3.28e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRV---YLAGKLLADYKPKELAQIMAVLpQKTD-------- 84
Cdd:PRK13651   23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewiFKDEKNKKKTKEKEKVLEKLVI-QKTRfkkikkik 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  85 ---------------QAFTFTVEETVAFGryPFQTGlfrqqTEKDEA--IVQEAMEQTGV-ADFAQKPIRELSGGEQQRV 146
Cdd:PRK13651  102 eirrrvgvvfqfaeyQLFEQTIEKDIIFG--PVSMG-----VSKEEAkkRAAKYIELVGLdESYLQRSPFELSGGQKRRV 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 147 YLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK13651  175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL-NKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241
YejF COG4172
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ...
 4-214 4.00e-21

ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443332 [Multi-domain]  Cd Length: 533  Bit Score: 95.52  E-value: 4.00e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLS----GGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAK----EGRVYLAGKLLADYKPKELAQI 75
Cdd:COG4172    10 EDLSvafgQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPDPaahpSGSILFDGQDLLGLSERELRRI 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  76 ------------MAVL-PQKT--DQaftftVEETVAFgrypfQTGLFRQQTEKdEAIvqEAMEQTGVADfAQKPIR---- 136
Cdd:COG4172    90 rgnriamifqepMTSLnPLHTigKQ-----IAEVLRL-----HRGLSGAAARA-RAL--ELLERVGIPD-PERRLDayph 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 137 ELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:COG4172   156 QLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQG 233
cbiO PRK13634
cobalt transporter ATP-binding subunit; Provisional
 14-215 6.40e-21

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 237454 [Multi-domain]  Cd Length: 290  Bit Score: 92.39  E-value: 6.40e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  14 RLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLL-ADYKPKELAqimaVLPQKTDQAFTF--- 89
Cdd:PRK13634   21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVItAGKKNKKLK----PLRKKVGIVFQFpeh 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  90 -----TVEETVAFGryPFQTGLFRqqtEKDEAIVQEAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:PRK13634   97 qlfeeTVEKDICFG--PMNFGVSE---EDAKQKAREMIELVGLpEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 164 PTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:PRK13634  172 PTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGT 223
modC_ABC TIGR02142
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ...
 6-214 6.96e-21

molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]


Pssm-ID: 131197 [Multi-domain]  Cd Length: 354  Bit Score: 93.25  E-value: 6.96e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   6 LSGGYGDSRLinNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYK-----PKELAQIMAVLP 80
Cdd:TIGR02142   5 FSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRkgiflPPEKRRIGYVFQ 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTdqAFT-FTVEETVAFGrYPFQTGLFRQQteKDEAIVqeamEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRIL 159
Cdd:TIGR02142  83 EAR--LFPhLSVRGNLRYG-MKRARPSERRI--SFERVI----ELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLL 153

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 160 FLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:TIGR02142 154 LMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDG 208
YhaQ COG4152
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...
 2-216 8.43e-21

ABC-type uncharacterized transport system, ATPase component [General function prediction only];


Pssm-ID: 443322 [Multi-domain]  Cd Length: 298  Bit Score: 92.09  E-value: 8.43e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLAD-------YKPKE--L 72
Cdd:COG4152     3 ELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPedrrrigYLPEErgL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  73 AQIMAVLpqktDQAftftveetVAFGRYpfqTGLfrqqtEKDEAI--VQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQ 150
Cdd:COG4152    83 YPKMKVG----EQL--------VYLARL---KGL-----SKAEAKrrADEWLERLGLGDRANKKVEELSKGNQQKVQLIA 142

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 151 ALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLtRESGlAAVsVF--HDLNTASLYCDELMFMKNGTA 216
Cdd:COG4152   143 ALLHDPELLILDEPFSGLDPVNVELLKDVIREL-AAKG-TTV-IFssHQMELVEELCDRIVIINKGRK 207
3a0107s01c2 TIGR00972
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein ...
 1-229 1.01e-20

phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. [Transport and binding proteins, Anions]


Pssm-ID: 273372 [Multi-domain]  Cd Length: 247  Bit Score: 90.82  E-value: 1.01e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTL-----LHLLTGTLPAKEGRVYLAGKLLADYK--PKELA 73
Cdd:TIGR00972   2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLlrslnRMNDLVPGVRIEGKVLFDGQDIYDKKidVVELR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  74 QIMAVLPQKTDqAFTFTVEETVAFGrypfqtglFRQQTEKD----EAIVQEAMEQTG----VADFAQKPIRELSGGEQQR 145
Cdd:TIGR00972  82 RRVGMVFQKPN-PFPMSIYDNIAYG--------PRLHGIKDkkelDEIVEESLKKAAlwdeVKDRLHDSALGLSGGQQQR 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 146 VYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLtRESgLAAVSVFHDLNTASLYCDELMFMKNGTAgpkqkPEYA 225
Cdd:TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKK-YTIVIVTHNMQQAARISDRTAFFYDGEL-----VEYG 225


                  ....
gi 1119636415 226 VTEQ 229
Cdd:TIGR00972 226 PTEQ 229
PRK10851 PRK10851
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
4-214 1.27e-20

sulfate/thiosulfate ABC transporter ATP-binding protein CysA;


Pssm-ID: 182778 [Multi-domain]  Cd Length: 353  Bit Score: 92.45  E-value: 1.27e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKlladykpkELAQIMAvlpQKT 83
Cdd:PRK10851    6 ANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGT--------DVSRLHA---RDR 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  84 DQAFTF---------TVEETVAFGrypfQTGLFRQQTEKDEAIVQEAM---EQTGVADFAQKPIRELSGGEQQRVYLAQA 151
Cdd:PRK10851   75 KVGFVFqhyalfrhmTVFDNIAFG----LTVLPRRERPNAAAIKAKVTqllEMVQLAHLADRYPAQLSGGQKQRVALARA 150

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119636415 152 LAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK10851  151 LAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQG 213
ABCG_EPDR cd03213
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ...
 14-215 1.30e-20

Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.


Pssm-ID: 213180 [Multi-domain]  Cd Length: 194  Bit Score: 89.15  E-value: 1.30e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  14 RLINNVSLTVEKGEFLGILGPNGSGKTT--LLHLLTGTLPAKEGRVYLAGKllaDYKPKELAQIMAVLPQKtDQAF-TFT 90
Cdd:cd03213    23 QLLKNVSGKAKPGELTAIMGPSGAGKSTllNALAGRRTGLGVSGEVLINGR---PLDKRSFRKIIGYVPQD-DILHpTLT 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  91 VEETVafgrypfqtglfrqqtekdeaivqeameqtgvaDFAQKpIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDL 170
Cdd:cd03213    99 VRETL---------------------------------MFAAK-LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDS 144

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1119636415 171 AYQKDLLDLIKRLtRESGLAAVSVFHDLnTASLY--CDELMFMKNGT 215
Cdd:cd03213   145 SSALQVMSLLRRL-ADTGRTIICSIHQP-SSEIFelFDKLLLLSQGR 189
AppF COG4608
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ...
 17-211 1.43e-20

ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443658 [Multi-domain]  Cd Length: 329  Bit Score: 92.10  E-value: 1.43e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  17 NNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKEL------AQIM-----AVL-PQKTd 84
Cdd:COG4608    35 DGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRELrplrrrMQMVfqdpyASLnPRMT- 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  85 qaftftVEETVAFgryPFQtgLFRQQTEKD-EAIVQEAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLD 162
Cdd:COG4608   114 ------VGDIIAE---PLR--IHGLASKAErRERVAELLELVGLrPEHADRYPHEFSGGQRQRIGIARALALNPKLIVCD 182

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1119636415 163 EPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFM 211
Cdd:COG4608   183 EPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVM 231
PRK14246 PRK14246
phosphate ABC transporter ATP-binding protein; Provisional
 12-214 1.62e-20

phosphate ABC transporter ATP-binding protein; Provisional


Pssm-ID: 172734 [Multi-domain]  Cd Length: 257  Bit Score: 90.49  E-value: 1.62e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  12 DSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLadYKPKELAQIMAV-LPQKTDQAFT-- 88
Cdd:PRK14246   22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVL--YFGKDIFQIDAIkLRKEVGMVFQqp 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  89 -----FTVEETVAfgrYPFQTGLFRQQTEKDEaIVQEAMEQTG----VADFAQKPIRELSGGEQQRVYLAQALAQQPRIL 159
Cdd:PRK14246  100 npfphLSIYDNIA---YPLKSHGIKEKREIKK-IVEECLRKVGlwkeVYDRLNSPASQLSGGQQQRLTIARALALKPKVL 175

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 160 FLDEPTNFLDLAYQKDLLDLIKRLTREsgLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK14246  176 LMDEPTSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNG 228
MglA COG1129
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
2-199 1.71e-20

ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];


Pssm-ID: 440745 [Multi-domain]  Cd Length: 497  Bit Score: 93.54  E-value: 1.71e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKttllhlltgtlPAKEGRVYLAGKLLADYKPKElAQ---ImAV 78
Cdd:COG1129     6 EMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKstlmkilsgvyQPDSGEILLDGEPVRFRSPRD-AQaagI-AI 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 LPQKTDQAFTFTVEETVAFGRYPFQTGLFRQQTEKDEAivQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRI 158
Cdd:COG1129    84 IHQELNLVPNLSVAENIFLGREPRRGGLIDWRAMRRRA--RELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARV 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1119636415 159 LFLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLN 199
Cdd:COG1129   162 LILDEPTASLTEREVERLFRIIRRL-KAQGVAIIYISHRLD 201
potA TIGR01187
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ...
 31-214 1.76e-20

spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 162242 [Multi-domain]  Cd Length: 325  Bit Score: 91.79  E-value: 1.76e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  31 ILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE-----LAQIMAVLPQktdqaftFTVEETVAFGrypfqtg 105
Cdd:TIGR01187   1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLrhinmVFQSYALFPH-------MTVEENVAFG------- 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 106 lFRQQTEKDEAI---VQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKR 182
Cdd:TIGR01187  67 -LKMRKVPRAEIkprVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT 145

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1119636415 183 LTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:TIGR01187 146 IQEQLGITFVFVTHDQEEAMTMSDRIAIMRKG 177
nikE PRK10419
nickel ABC transporter ATP-binding protein NikE;
5-214 1.79e-20

nickel ABC transporter ATP-binding protein NikE;


Pssm-ID: 236689 [Multi-domain]  Cd Length: 268  Bit Score: 90.52  E-value: 1.79e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   5 GLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELA----------- 73
Cdd:PRK10419   17 GLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKafrrdiqmvfq 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  74 -QIMAVLPQKtdqaftfTVEETVafgRYPFQTGLFRQQTEKdEAIVQEAMEQTGVAD-FAQKPIRELSGGEQQRVYLAQA 151
Cdd:PRK10419   97 dSISAVNPRK-------TVREII---REPLRHLLSLDKAER-LARASEMLRAVDLDDsVLDKRPPQLSGGQLQRVCLARA 165

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119636415 152 LAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK10419  166 LAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNG 228
nikD PRK10418
nickel transporter ATP-binding protein NikD; Provisional
 15-214 1.91e-20

nickel transporter ATP-binding protein NikD; Provisional


Pssm-ID: 236688 [Multi-domain]  Cd Length: 254  Bit Score: 90.14  E-value: 1.91e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  15 LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAkeGRVYLAGKLLADYKPKELAQI----MAVLPQKTDQAF--- 87
Cdd:PRK10418   18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPA--GVRQTAGRVLLDGKPVAPCALrgrkIATIMQNPRSAFnpl 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  88 ----TFTVEETVAFGRypfqtglfrqqtEKDEAIVQEAMEQTGVADFAQKPIR---ELSGGEQQRVYLAQALAQQPRILF 160
Cdd:PRK10418   96 htmhTHARETCLALGK------------PADDATLTAALEAVGLENAARVLKLypfEMSGGMLQRMMIALALLCEAPFII 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 161 LDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK10418  164 ADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHG 217
Uup COG0488
ATPase components of ABC transporters with duplicated ATPase domains [General function ...
 3-170 2.45e-20

ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];


Pssm-ID: 440254 [Multi-domain]  Cd Length: 520  Bit Score: 93.21  E-value: 2.45e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKttllhlltgtlpakegRVyLAGKLLAD----YKPKELaqIMAV 78
Cdd:COG0488     1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKst------------llKI-LAGELEPDsgevSIPKGL--RIGY 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 LPQKTDQAFTFTVEETVAFGRypfqTGLFRQQTEKDEAI---------------VQEAMEQTG----------------- 126
Cdd:COG0488    66 LPQEPPLDDDLTVLDTVLDGD----AELRALEAELEELEaklaepdedlerlaeLQEEFEALGgweaearaeeilsglgf 141

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1119636415 127 VADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDL 170
Cdd:COG0488   142 PEEDLDRPVSELSGGWRRRVALARALLSEPDLLLLDEPTNHLDL 185
cbiO PRK13649
energy-coupling factor transporter ATPase;
12-214 3.32e-20

energy-coupling factor transporter ATPase;


Pssm-ID: 184208 [Multi-domain]  Cd Length: 280  Bit Score: 90.19  E-value: 3.32e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  12 DSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLL-ADYKPKELAQIMA----VLPQKTDQA 86
Cdd:PRK13649   19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLItSTSKNKDIKQIRKkvglVFQFPESQL 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  87 FTFTVEETVAFGRYPFQTglfrqQTEKDEAIVQEAMEQTGVAD--FAQKPIrELSGGEQQRVYLAQALAQQPRILFLDEP 164
Cdd:PRK13649   99 FEETVLKDVAFGPQNFGV-----SQEEAEALAREKLALVGISEslFEKNPF-ELSGGQMRRVAIAGILAMEPKILVLDEP 172

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1119636415 165 TNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK13649  173 TAGLDPKGRKELMTLFKKL-HQSGMTIVLVTHLMDDVANYADFVYVLEKG 221
PRK10895 PRK10895
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
 1-235 5.57e-20

lipopolysaccharide ABC transporter ATP-binding protein; Provisional


Pssm-ID: 182817 [Multi-domain]  Cd Length: 241  Bit Score: 88.80  E-value: 5.57e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI-MAVL 79
Cdd:PRK10895    4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRgIGYL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 PQKTDQAFTFTVEETVaFGRYPFQTGLFRQQtEKDEAivQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRIL 159
Cdd:PRK10895   84 PQEASIFRRLSVYDNL-MAVLQIRDDLSAEQ-REDRA--NELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFI 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1119636415 160 FLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPEYAVTEQSIKAVY 235
Cdd:PRK10895  160 LLDEPFAGVDPISVIDIKRIIEHL-RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVY 234
PRK13537 PRK13537
nodulation factor ABC transporter ATP-binding protein NodI;
4-248 7.98e-20

nodulation factor ABC transporter ATP-binding protein NodI;


Pssm-ID: 237420 [Multi-domain]  Cd Length: 306  Bit Score: 89.48  E-value: 7.98e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQImAVLPQKT 83
Cdd:PRK13537   11 RNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV-GVVPQFD 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  84 DQAFTFTVEETV-AFGRYpfqTGLFRQQTekdEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLD 162
Cdd:PRK13537   90 NLDPDFTVRENLlVFGRY---FGLSAAAA---RALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 163 EPTNFLDLAYQKDLLDLIKRLTrESGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPEYAVTEQ---SIKAVYDTDV 239
Cdd:PRK13537  164 EPTTGLDPQARHLMWERLRSLL-ARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEigcDVIEIYGPDP 242


                  ....*....
gi 1119636415 240 TALVHQSSP 248
Cdd:PRK13537  243 VALRDELAP 251
LPS_export_lptB TIGR04406
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ...
 1-235 1.00e-19

LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]


Pssm-ID: 275199 [Multi-domain]  Cd Length: 239  Bit Score: 87.71  E-value: 1.00e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI-MAVL 79
Cdd:TIGR04406   2 LVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLgIGYL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 PQKTDQAFTFTVEETVAfGRYPFQTGLFR-QQTEKDEAIvqeaMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRI 158
Cdd:TIGR04406  82 PQEASIFRKLTVEENIM-AVLEIRKDLDRaEREERLEAL----LEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKF 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 159 LFLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPEYAVTEQSIKAVY 235
Cdd:TIGR04406 157 ILLDEPFAGVDPIAVGDIKKIIKHL-KERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVANEKVRRVY 232
TauB COG4525
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
2-218 1.09e-19

ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 443596 [Multi-domain]  Cd Length: 262  Bit Score: 88.38  E-value: 1.09e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLS---GGYGDSRLI-NNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKlladykpkelaqimA 77
Cdd:COG4525     5 TVRHVSvryPGGGQPQPAlQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGV--------------P 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  78 VLPQKTDQAFTF---------TVEETVAFGrypFQ-TGLFRQQTEkdeAIVQEAMEQTGVADFAQKPIRELSGGEQQRVY 147
Cdd:COG4525    71 VTGPGADRGVVFqkdallpwlNVLDNVAFG---LRlRGVPKAERR---ARAEELLALVGLADFARRRIWQLSGGMRQRVG 144

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119636415 148 LAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMkngTAGP 218
Cdd:COG4525   145 IARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSVEEALFLATRLVVM---SPGP 212
ABC_FtsE cd03292
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ...
 16-181 1.87e-19

Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages


Pssm-ID: 213259 [Multi-domain]  Cd Length: 214  Bit Score: 86.31  E-value: 1.87e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELA---QIMAVLPQKTDQAFTFTVE 92
Cdd:cd03292    17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPylrRKIGVVFQDFRLLPDRNVY 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  93 ETVAFgryPFQ-TGLFRQQTEKDeaiVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLA 171
Cdd:cd03292    97 ENVAF---ALEvTGVPPREIRKR---VPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPD 170

                         170
                  ....*....|
gi 1119636415 172 YQKDLLDLIK 181
Cdd:cd03292   171 TTWEIMNLLK 180
ABCC_cytochrome_bd cd03247
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ...
 6-214 2.29e-19

ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.


Pssm-ID: 213214 [Multi-domain]  Cd Length: 178  Bit Score: 85.06  E-value: 2.29e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   6 LSGGYGDSR--LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKpKELAQIMAVLPQKT 83
Cdd:cd03247     6 VSFSYPEQEqqVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE-KALSSLISVLNQRP 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  84 dqaftftveetvafgrYPFQTGLfrqqtekdeaivqeaMEQTGvadfaqkpiRELSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:cd03247    85 ----------------YLFDTTL---------------RNNLG---------RRFSGGERQRLALARILLQDAPIVLLDE 124

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1119636415 164 PTNFLDLAYQKDLLDLIKRLTRESGLAAVSvfHDLnTASLYCDELMFMKNG 214
Cdd:cd03247   125 PTVGLDPITERQLLSLIFEVLKDKTLIWIT--HHL-TGIEHMDKILFLENG 172
Uup COG0488
ATPase components of ABC transporters with duplicated ATPase domains [General function ...
 3-171 2.48e-19

ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];


Pssm-ID: 440254 [Multi-domain]  Cd Length: 520  Bit Score: 90.12  E-value: 2.48e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTllhlltgtlpakegrvyLAgKLLADykpkELAQimavlpqk 82
Cdd:COG0488   318 LEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKST-----------------LL-KLLAG----ELEP-------- 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 tdQAFTFTVEETVAFGrYpfqtglFRQQTE--KDEAIVQEAMEQTG-----------VADF------AQKPIRELSGGEQ 143
Cdd:COG0488   368 --DSGTVKLGETVKIG-Y------FDQHQEelDPDKTVLDELRDGApggteqevrgyLGRFlfsgddAFKPVGVLSGGEK 438

                         170       180
                  ....*....|....*....|....*...
gi 1119636415 144 QRVYLAQALAQQPRILFLDEPTNFLDLA 171
Cdd:COG0488   439 ARLALAKLLLSPPNVLLLDEPTNHLDIE 466
ArpD COG4618
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ...
 3-220 3.02e-19

ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443660 [Multi-domain]  Cd Length: 563  Bit Score: 90.19  E-value: 3.02e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSR--LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLP 80
Cdd:COG4618   333 VENLTVVPPGSKrpILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELGRHIGYLP 412

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTdQAFTFTVEETVAfgrypfqtglfRQQTEKDEAIVqEAMEQTGVADFAQK-------PIRE----LSGGEQQRVYLA 149
Cdd:COG4618   413 QDV-ELFDGTIAENIA-----------RFGDADPEKVV-AAAKLAGVHEMILRlpdgydtRIGEggarLSGGQRQRIGLA 479

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 150 QALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLyCDELMFMKNGTA---GPKQ 220
Cdd:COG4618   480 RALYGDPRLVVLDEPNSNLDDEGEAALAAAIRAL-KARGATVVVITHRPSLLAA-VDKLLVLRDGRVqafGPRD 551
ssuB PRK11247
aliphatic sulfonates transport ATP-binding subunit; Provisional
 4-217 3.38e-19

aliphatic sulfonates transport ATP-binding subunit; Provisional


Pssm-ID: 183055 [Multi-domain]  Cd Length: 257  Bit Score: 86.66  E-value: 3.38e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKegrvylAGKLLADYKP----KELAQIM--- 76
Cdd:PRK11247   16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS------AGELLAGTAPlaeaREDTRLMfqd 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  77 -AVLPQKTdqaftftVEETVAFGRypfqTGLFRQQTEkdeaivqEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQ 155
Cdd:PRK11247   90 aRLLPWKK-------VIDNVGLGL----KGQWRDAAL-------QALAAVGLADRANEWPAALSGGQKQRVALARALIHR 151

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 156 PRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTAG 217
Cdd:PRK11247  152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIG 213
ABC_Carb_Monos_I cd03216
First domain of the ATP-binding cassette component of monosaccharide transport system; This ...
 2-215 4.11e-19

First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.


Pssm-ID: 213183 [Multi-domain]  Cd Length: 163  Bit Score: 84.02  E-value: 4.11e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKElaqimavlpq 81
Cdd:cd03216     2 ELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRD---------- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 ktdqaftftveetvafgrypfqtglfrqqtekdeaivqeaMEQTGVADFAQkpireLSGGEQQRVYLAQALAQQPRILFL 161
Cdd:cd03216    72 ----------------------------------------ARRAGIAMVYQ-----LSVGERQMVEIARALARNARLLIL 106

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:cd03216   107 DEPTAALTPAEVERLFKVIRRL-RAQGVAVIFISHRLDEVFEIADRVTVLRDGR 159
PRK15134 PRK15134
microcin C ABC transporter ATP-binding protein YejF; Provisional
 11-214 4.76e-19

microcin C ABC transporter ATP-binding protein YejF; Provisional


Pssm-ID: 237917 [Multi-domain]  Cd Length: 529  Bit Score: 89.38  E-value: 4.76e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAkEGRVYLAGKLLADYKPKELAQI---MAVLPQKTDQAF 87
Cdd:PRK15134  297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS-QGEIWFDGQPLHNLNRRQLLPVrhrIQVVFQDPNSSL 375

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  88 T--FTVEETVAFGRYPFQTGLFRQQTEkdeAIVQEAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEP 164
Cdd:PRK15134  376 NprLNVLQIIEEGLRVHQPTLSAAQRE---QQVIAVMEEVGLdPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEP 452

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1119636415 165 TNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK15134  453 TSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502
AbcC COG1135
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
17-214 6.72e-19

ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 440750 [Multi-domain]  Cd Length: 339  Bit Score: 87.44  E-value: 6.72e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  17 NNVSLTVEKGEFLGILGPNGSGKttllhlltgtlpakEGRVYLAGKLLADYKPKELAQI-----M-----AVLPQKTdqa 86
Cdd:COG1135    22 DDVSLTIEKGEIFGIIGYSGAGKstlircinllerptSGSVLVDGVDLTALSERELRAArrkigMifqhfNLLSSRT--- 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  87 ftftVEETVAFgryPFQ-TGLFRQQTEKdeaIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPT 165
Cdd:COG1135    99 ----VAENVAL---PLEiAGVPKAEIRK---RVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPKVLLCDEAT 168

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1119636415 166 NFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:COG1135   169 SALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENG 217
ABCC_ATM1_transporter cd03253
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ...
 9-214 9.00e-19

ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213220 [Multi-domain]  Cd Length: 236  Bit Score: 84.97  E-value: 9.00e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   9 GYGDSR-LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTdQAF 87
Cdd:cd03253     9 AYDPGRpVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDT-VLF 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  88 TFTVEETVAFGRyPFQTglfrqqtekDEAIVqEAMEQTGVADFAQK-P------IRE----LSGGEQQRVYLAQALAQQP 156
Cdd:cd03253    88 NDTIGYNIRYGR-PDAT---------DEEVI-EAAKAAQIHDKIMRfPdgydtiVGErglkLSGGEKQRVAIARAILKNP 156

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLTResGLAAVSVFHDLNTASlYCDELMFMKNG 214
Cdd:cd03253   157 PILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIV-NADKIIVLKDG 211
ABCF_EF-3 cd03221
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ...
 2-215 1.31e-18

ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.


Pssm-ID: 213188 [Multi-domain]  Cd Length: 144  Bit Score: 82.11  E-value: 1.31e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTllhlltgtlpakegrvylagklladykpkeLAQIMAvlpq 81
Cdd:cd03221     2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKST------------------------------LLKLIA---- 47

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 ktdqaftftveetvafgrypfqtglfrQQTEKDEAIVqEAMEQTGVADFAQkpireLSGGEQQRVYLAQALAQQPRILFL 161
Cdd:cd03221    48 ---------------------------GELEPDEGIV-TWGSTVKIGYFEQ-----LSGGEKMRLALAKLLLENPNLLLL 94

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLtrESGLAAVSvfHD---LNTAslyCDELMFMKNGT 215
Cdd:cd03221    95 DEPTNHLDLESIEALEEALKEY--PGTVILVS--HDryfLDQV---ATKIIELEDGK 144
cbiO PRK13645
energy-coupling factor transporter ATPase;
14-222 1.46e-18

energy-coupling factor transporter ATPase;


Pssm-ID: 184204 [Multi-domain]  Cd Length: 289  Bit Score: 85.44  E-value: 1.46e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  14 RLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVylagkLLADYK-PKELAQIMAVLPQKTD-------- 84
Cdd:PRK13645   25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT-----IVGDYAiPANLKKIKEVKRLRKEiglvfqfp 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  85 --QAFTFTVEETVAFGryPFQTGLFRQQTEKDeaiVQEAMEQTGVA-DFAQKPIRELSGGEQQRVYLAQALAQQPRILFL 161
Cdd:PRK13645  100 eyQLFQETIEKDIAFG--PVNLGENKQEAYKK---VPELLKLVQLPeDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVL 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKP 222
Cdd:PRK13645  175 DEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
ArtP COG4161
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
10-214 6.03e-18

ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443326 [Multi-domain]  Cd Length: 242  Bit Score: 82.75  E-value: 6.03e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLaDYKPKELAQIMAVLPQKTDQAFT- 88
Cdd:COG4161    12 YGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQF-DFSQKPSEKAIRLLRQKVGMVFQq 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  89 ------FTVEETVAfgRYPFQT-GLFRQQTeKDEAivQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFL 161
Cdd:COG4161    91 ynlwphLTVMENLI--EAPCKVlGLSKEQA-REKA--MKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLF 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLTrESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:COG4161   166 DEPTAALDPEITAQVVEIIRELS-QTGITQVIVTHEVEFARKVASQVVYMEKG 217
fbpC PRK11432
ferric ABC transporter ATP-binding protein;
10-215 6.31e-18

ferric ABC transporter ATP-binding protein;


Pssm-ID: 183133 [Multi-domain]  Cd Length: 351  Bit Score: 84.77  E-value: 6.31e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE-----LAQIMAVLPQktd 84
Cdd:PRK11432   16 FGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQrdicmVFQSYALFPH--- 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  85 qaftFTVEETVAFGrypfqtgLFRQQTEKDE--AIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLD 162
Cdd:PRK11432   93 ----MSLGENVGYG-------LKMLGVPKEErkQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFD 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1119636415 163 EPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:PRK11432  162 EPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGK 214
LptB COG1137
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ...
 2-164 8.52e-18

ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440752 [Multi-domain]  Cd Length: 240  Bit Score: 82.38  E-value: 8.52e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI-MAVLP 80
Cdd:COG1137     5 EAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLgIGYLP 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QktdQAFTF---TVEETVAfgrypfqtgLFRQQTEKD----EAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALA 153
Cdd:COG1137    85 Q---EASIFrklTVEDNIL---------AVLELRKLSkkerEERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALA 152

                         170
                  ....*....|.
gi 1119636415 154 QQPRILFLDEP 164
Cdd:COG1137   153 TNPKFILLDEP 163
ABCC_MsbA cd03251
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ...
 16-214 8.56e-18

ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213218 [Multi-domain]  Cd Length: 234  Bit Score: 82.28  E-value: 8.56e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTdqaFTF--TVEE 93
Cdd:cd03251    18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDV---FLFndTVAE 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  94 TVAFGRypfqtglfrqqTEKDEAIVQEAMEQTGVADFAQK-------PIRE----LSGGEQQRVYLAQALAQQPRILFLD 162
Cdd:cd03251    95 NIAYGR-----------PGATREEVEEAARAANAHEFIMElpegydtVIGErgvkLSGGQRQRIAIARALLKDPPILILD 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 163 EPTNFLDLAYQKDLLDLIKRLTResGLAAVSVFHDLNTASlYCDELMFMKNG 214
Cdd:cd03251   164 EATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIE-NADRIVVLEDG 212
ABCC_TAP cd03248
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ...
 12-170 9.73e-18

ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.


Pssm-ID: 213215 [Multi-domain]  Cd Length: 226  Bit Score: 81.75  E-value: 9.73e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  12 DSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTdQAFTFTV 91
Cdd:cd03248    26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEP-VLFARSL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  92 EETVAFgrypfqtGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRE-------LSGGEQQRVYLAQALAQQPRILFLDEP 164
Cdd:cd03248   105 QDNIAY-------GLQSCSFECVKEAAQKAHAHSFISELASGYDTEvgekgsqLSGGQKQRVAIARALIRNPQVLILDEA 177


                  ....*.
gi 1119636415 165 TNFLDL 170
Cdd:cd03248   178 TSALDA 183
artP PRK11124
arginine transporter ATP-binding subunit; Provisional
 10-214 1.11e-17

arginine transporter ATP-binding subunit; Provisional


Pssm-ID: 182980 [Multi-domain]  Cd Length: 242  Bit Score: 81.98  E-value: 1.11e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGK---LLADYKPKELAQimavLPQKTDQA 86
Cdd:PRK11124   12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfdFSKTPSDKAIRE----LRRNVGMV 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  87 FT-------FTVEETVAfgRYPFQT-GLfrqqtEKDEAIvQEAME---QTGVADFAQKPIRELSGGEQQRVYLAQALAQQ 155
Cdd:PRK11124   88 FQqynlwphLTVQQNLI--EAPCRVlGL-----SKDQAL-ARAEKlleRLRLKPYADRFPLHLSGGQQQRVAIARALMME 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1119636415 156 PRILFLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK11124  160 PQVLLFDEPTAALDPEITAQIVSIIREL-AETGITQVIVTHEVEVARKTASRVVYMENG 217
PRK09700 PRK09700
D-allose ABC transporter ATP-binding protein AlsA;
12-231 1.21e-17

D-allose ABC transporter ATP-binding protein AlsA;


Pssm-ID: 182036 [Multi-domain]  Cd Length: 510  Bit Score: 84.84  E-value: 1.21e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  12 DSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE-LAQIMA-VLPQKTDQAF-- 87
Cdd:PRK09700  275 DRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDaVKKGMAyITESRRDNGFfp 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  88 TFTVEETVAF------GRYPFQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKpIRELSGGEQQRVYLAQALAQQPRILFL 161
Cdd:PRK09700  355 NFSIAQNMAIsrslkdGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN-ITELSGGNQQKVLISKWLCCCPEVIIF 433

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLTrESGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPEYAVTEQSI 231
Cdd:PRK09700  434 DEPTRGIDVGAKAEIYKVMRQLA-DDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEEEI 502
COG4586 COG4586
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...
 16-259 1.29e-17

ABC-type uncharacterized transport system, ATPase component [General function prediction only];


Pssm-ID: 443643 [Multi-domain]  Cd Length: 323  Bit Score: 83.21  E-value: 1.29e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLhlltgtlpaK---------EGRVYLAGklladYKP----KELA-QIMAVLPQ 81
Cdd:COG4586    38 VDDISFTIEPGEIVGFIGPNGAGKSTTI---------KmltgilvptSGEVRVLG-----YVPfkrrKEFArRIGVVFGQ 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KTDQAFTFTVEETvafgrypFQtgLFRQQTEKDEAIVQEAM----EQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPR 157
Cdd:COG4586   104 RSQLWWDLPAIDS-------FR--LLKAIYRIPDAEYKKRLdelvELLDLGELLDTPVRQLSLGQRMRCELAAALLHRPK 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 158 ILFLDEPTNFLDLAYQKDLLDLIKRLTRESGlaaVSVF---HDLN-TASLyCDELMFMKNGtagpkqkpeyavteqsiKA 233
Cdd:COG4586   175 ILFLDEPTIGLDVVSKEAIREFLKEYNRERG---TTILltsHDMDdIEAL-CDRVIVIDHG-----------------RI 233

                         250       260
                  ....*....|....*....|....*.
gi 1119636415 234 VYDTDVTALVHQSSPKPMIVIQPEKD 259
Cdd:COG4586   234 IYDGSLEELKERFGPYKTIVLELAEP 259
cbiO PRK13641
energy-coupling factor transporter ATPase;
16-214 1.33e-17

energy-coupling factor transporter ATPase;


Pssm-ID: 237456 [Multi-domain]  Cd Length: 287  Bit Score: 82.57  E-value: 1.33e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGK-LLADYKPKELAQIMA----VLPQKTDQAFTFT 90
Cdd:PRK13641   23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYhITPETGNKNLKKLRKkvslVFQFPEAQLFENT 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  91 VEETVAFGryPFQTGlFRQQTEKDEAIvqEAMEQTGVA-DFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLD 169
Cdd:PRK13641  103 VLKDVEFG--PKNFG-FSEDEAKEKAL--KWLKKVGLSeDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLD 177

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1119636415 170 LAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK13641  178 PEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHG 221
xylG TIGR02633
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ...
 1-214 1.78e-17

D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 131681 [Multi-domain]  Cd Length: 500  Bit Score: 84.49  E-value: 1.78e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLP--AKEGRVYLAGKLL--ADYKPKELAQIm 76
Cdd:TIGR02633   2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPhgTWDGEIYWSGSPLkaSNIRDTERAGI- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  77 AVLPQKTDQAFTFTVEETVAFGRYPFQTGlfrQQTEKDEAIV--QEAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQALA 153
Cdd:TIGR02633  81 VIIHQELTLVPELSVAENIFLGNEITLPG---GRMAYNAMYLraKNLLRELQLdADNVTRPVGDYGGGQQQLVEIAKALN 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119636415 154 QQPRILFLDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDG 217
PRK13409 PRK13409
ribosome biogenesis/translation initiation ATPase RLI;
17-209 1.88e-17

ribosome biogenesis/translation initiation ATPase RLI;


Pssm-ID: 184037 [Multi-domain]  Cd Length: 590  Bit Score: 84.47  E-value: 1.88e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  17 NNVSLTVE-----KGEFLGILGPNGSGKTTLlhlltgtlpAKegrvYLAGKLLADYKPKELAQIMAVLPQKTDQAFTFTV 91
Cdd:PRK13409  351 GDFSLEVEggeiyEGEVIGIVGPNGIGKTTF---------AK----LLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTV 417

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  92 EEtvafgrypfqtgLFRQQTEK--DEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLD 169
Cdd:PRK13409  418 ED------------LLRSITDDlgSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1119636415 170 LAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELM 209
Cdd:PRK13409  486 VEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLM 525
lolD PRK11629
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
15-202 1.91e-17

lipoprotein-releasing ABC transporter ATP-binding protein LolD;


Pssm-ID: 183244 [Multi-domain]  Cd Length: 233  Bit Score: 81.02  E-value: 1.91e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  15 LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLL--------ADYKPKELA---QIMAVLPQkt 83
Cdd:PRK11629   24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMsklssaakAELRNQKLGfiyQFHHLLPD-- 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  84 dqaftFTVEETVAFgryPFQTGLFRQQTEKDEAivQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:PRK11629  102 -----FTALENVAM---PLLIGKKKPAEINSRA--LEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADE 171

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1119636415 164 PTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTAS 202
Cdd:PRK11629  172 PTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAK 210
PRK13549 PRK13549
xylose transporter ATP-binding subunit; Provisional
 10-214 2.41e-17

xylose transporter ATP-binding subunit; Provisional


Pssm-ID: 184134 [Multi-domain]  Cd Length: 506  Bit Score: 84.21  E-value: 2.41e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLP--AKEGRVYLAGKLLADYKPKE--------LAQIMAVL 79
Cdd:PRK13549   15 FGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPhgTYEGEIIFEGEELQASNIRDteragiaiIHQELALV 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 PQktdqaftFTVEETVAFGRYPFQTGLFrqqteKDEAIVQEA---MEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQP 156
Cdd:PRK13549   95 KE-------LSVLENIFLGNEITPGGIM-----DYDAMYLRAqklLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK13549  163 RLLILDEPTASLTESETAVLLDIIRDL-KAHGIACIYISHKLNEVKAISDTICVIRDG 219
cbiO PRK13643
energy-coupling factor transporter ATPase;
13-214 2.62e-17

energy-coupling factor transporter ATPase;


Pssm-ID: 184203 [Multi-domain]  Cd Length: 288  Bit Score: 82.09  E-value: 2.62e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  13 SRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLL-ADYKPKELA----QIMAVLPQKTDQAF 87
Cdd:PRK13643   19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVsSTSKQKEIKpvrkKVGVVFQFPESQLF 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  88 TFTVEETVAFGryPFQTGLFRQQTEKdeaIVQEAMEQTGVA-DFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:PRK13643   99 EETVLKDVAFG--PQNFGIPKEKAEK---IAAEKLEMVGLAdEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTA 173

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1119636415 167 FLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK13643  174 GLDPKARIEMMQLFESI-HQSGQTVVLVTHLMDDVADYADYVYLLEKG 220
thiQ PRK10771
thiamine ABC transporter ATP-binding protein ThiQ;
20-201 2.88e-17

thiamine ABC transporter ATP-binding protein ThiQ;


Pssm-ID: 182716 [Multi-domain]  Cd Length: 232  Bit Score: 80.78  E-value: 2.88e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  20 SLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKllaDYKPKELAQ-IMAVLPQKTDQAFTFTVEETVAFG 98
Cdd:PRK10771   19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQ---DHTTTPPSRrPVSMLFQENNLFSHLTVAQNIGLG 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  99 RYPfqtGL--FRQQTEKDEAIVQeameQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDL 176
Cdd:PRK10771   96 LNP---GLklNAAQREKLHAIAR----QMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEM 168

                         170       180
                  ....*....|....*....|....*
gi 1119636415 177 LDLIKRLTRESGLAAVSVFHDLNTA 201
Cdd:PRK10771  169 LTLVSQVCQERQLTLLMVSHSLEDA 193
PRK10584 PRK10584
putative ABC transporter ATP-binding protein YbbA; Provisional
 9-215 3.00e-17

putative ABC transporter ATP-binding protein YbbA; Provisional


Pssm-ID: 182569 [Multi-domain]  Cd Length: 228  Bit Score: 80.59  E-value: 3.00e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   9 GYGDSRL--INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQA 86
Cdd:PRK10584   17 GQGEHELsiLTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQS 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  87 F----TFTVEETVAFgrypfqTGLFRQQTEKD-EAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFL 161
Cdd:PRK10584   97 FmlipTLNALENVEL------PALLRGESSRQsRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFA 170

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASlYCDELMFMKNGT 215
Cdd:PRK10584  171 DEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQ 223
MglA COG1129
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
1-190 3.15e-17

ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];


Pssm-ID: 440745 [Multi-domain]  Cd Length: 497  Bit Score: 83.53  E-value: 3.15e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGygdsRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE-LAQIMAVL 79
Cdd:COG1129   257 LEVEGLSVG----GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSPRDaIRAGIAYV 332

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 PQ--KTDQAF-TFTVEETVAFGRYPFQT--GLFRQQTEKdeAIVQEAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQALA 153
Cdd:COG1129   333 PEdrKGEGLVlDLSIRENITLASLDRLSrgGLLDRRRER--ALAEEYIKRLRIkTPSPEQPVGNLSGGNQQKVVLAKWLA 410

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1119636415 154 QQPRILFLDEPTNFLDLAYQKDLLDLIKRLTREsGLA 190
Cdd:COG1129   411 TDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKA 446
PRK15439 PRK15439
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
 18-214 3.93e-17

autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional


Pssm-ID: 185336 [Multi-domain]  Cd Length: 510  Bit Score: 83.56  E-value: 3.93e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  18 NVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE-LAQIMAVLPQKT-------DQAFTF 89
Cdd:PRK15439  281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQrLARGLVYLPEDRqssglylDAPLAW 360

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  90 TVEeTVAFGRYPFQtglfrQQTEKDEAIVQEAMEQTGVA-DFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFL 168
Cdd:PRK15439  361 NVC-ALTHNRRGFW-----IKPARENAVLERYRRALNIKfNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGV 434

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1119636415 169 DLAYQKDLLDLIKRLTrESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK15439  435 DVSARNDIYQLIRSIA-AQNVAVLFISSDLEEIEQMADRVLVMHQG 479
Rli1 COG1245
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ...
 20-209 4.34e-17

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440858 [Multi-domain]  Cd Length: 592  Bit Score: 83.68  E-value: 4.34e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  20 SLTVE-----KGEFLGILGPNGSGKTTLlhlltgtlpAKegrvYLAGKLLADYKPKELAQIMAVLPQKTDQAFTFTVEE- 93
Cdd:COG1245   355 SLEVEggeirEGEVLGIVGPNGIGKTTF---------AK----ILAGVLKPDEGEVDEDLKISYKPQYISPDYDGTVEEf 421

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  94 -----TVAFGRYPFQTglfrqqtekdeaivqEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFL 168
Cdd:COG1245   422 lrsanTDDFGSSYYKT---------------EIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHL 486

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1119636415 169 DLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELM 209
Cdd:COG1245   487 DVEQRLAVAKAIRRFAENRGKTAMVVDHDIYLIDYISDRLM 527
PRK14258 PRK14258
phosphate ABC transporter ATP-binding protein; Provisional
 1-237 5.35e-17

phosphate ABC transporter ATP-binding protein; Provisional


Pssm-ID: 184593 [Multi-domain]  Cd Length: 261  Bit Score: 80.47  E-value: 5.35e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAK-----EGRVYLAGKLLADYK---PKEL 72
Cdd:PRK14258    8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELEsevrvEGRVEFFNQNIYERRvnlNRLR 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  73 AQIMAVLPQKtdQAFTFTVEETVAFGrypFQTGLFRQQTEKDEaIVQEAMEQTGVADFAQKPIR----ELSGGEQQRVYL 148
Cdd:PRK14258   88 RQVSMVHPKP--NLFPMSVYDNVAYG---VKIVGWRPKLEIDD-IVESALKDADLWDEIKHKIHksalDLSGGQQQRLCI 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 149 AQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPEYAVTE 228
Cdd:PRK14258  162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTK 241


                  ....*....
gi 1119636415 229 QSIKAVYDT 237
Cdd:PRK14258  242 KIFNSPHDS 250
ABC_CcmA_heme_exporter cd03231
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ...
 1-208 5.40e-17

Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.


Pssm-ID: 213198 [Multi-domain]  Cd Length: 201  Bit Score: 79.07  E-value: 5.40e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPkELAQIMAVLP 80
Cdd:cd03231     1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRD-SIARGLLYLG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTFTVEETVAFGRypfqtglfrqqTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILF 160
Cdd:cd03231    80 HAPGIKTTLSVLENLRFWH-----------ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWI 148

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1119636415 161 LDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDEL 208
Cdd:cd03231   149 LDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAREL 196
PRK15134 PRK15134
microcin C ABC transporter ATP-binding protein YejF; Provisional
 14-248 7.53e-17

microcin C ABC transporter ATP-binding protein YejF; Provisional


Pssm-ID: 237917 [Multi-domain]  Cd Length: 529  Bit Score: 82.83  E-value: 7.53e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  14 RLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAK-----EGRVYLAGKLLADYKPKELAQI----MAVLPQKTD 84
Cdd:PRK15134   23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPpvvypSGDIRFHGESLLHASEQTLRGVrgnkIAMIFQEPM 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  85 QAFT--FTVE----ETVAFGRypfqtGLfRQQTEKDEAIvqEAMEQTGVADFAQK----PiRELSGGEQQRVYLAQALAQ 154
Cdd:PRK15134  103 VSLNplHTLEkqlyEVLSLHR-----GM-RREAARGEIL--NCLDRVGIRQAAKRltdyP-HQLSGGERQRVMIAMALLT 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 155 QPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQK-------PEYAVT 227
Cdd:PRK15134  174 RPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRaatlfsaPTHPYT 253

                         250       260
                  ....*....|....*....|.
gi 1119636415 228 EQSIKAVYDTDVTALVHQSSP 248
Cdd:PRK15134  254 QKLLNSEPSGDPVPLPEPASP 274
livF PRK11614
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
6-214 1.10e-16

high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;


Pssm-ID: 183231 [Multi-domain]  Cd Length: 237  Bit Score: 79.15  E-value: 1.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   6 LSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYkpkELAQIM----AVLPQ 81
Cdd:PRK11614   11 VSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDW---QTAKIMreavAIVPE 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KTDQAFTFTVEETVAFGRYPFQTGLFRQQTEKDEAIVQEAMEQTgvadfAQKPiRELSGGEQQRVYLAQALAQQPRILFL 161
Cdd:PRK11614   88 GRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERR-----IQRA-GTMSGGEQQMLAIGRALMSQPRLLLL 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK11614  162 DEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENG 213
PRK11160 PRK11160
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
 4-180 1.44e-16

cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed


Pssm-ID: 236865 [Multi-domain]  Cd Length: 574  Bit Score: 81.79  E-value: 1.44e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRL--INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQ 81
Cdd:PRK11160  342 NNVSFTYPDQPQpvLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQ 421

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KTDqAFTFTVEETVAFGrypfqtglfrQQTEKDEAIVqEAMEQTGVADFAQ--KPI--------RELSGGEQQRVYLAQA 151
Cdd:PRK11160  422 RVH-LFSATLRDNLLLA----------APNASDEALI-EVLQQVGLEKLLEddKGLnawlgeggRQLSGGEQRRLGIARA 489

                         170       180
                  ....*....|....*....|....*....
gi 1119636415 152 LAQQPRILFLDEPTNFLDLAYQKDLLDLI 180
Cdd:PRK11160  490 LLHDAPLLLLDEPTEGLDAETERQILELL 518
livG PRK11300
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
 1-223 2.14e-16

leucine/isoleucine/valine transporter ATP-binding subunit; Provisional


Pssm-ID: 183080 [Multi-domain]  Cd Length: 255  Bit Score: 78.49  E-value: 2.14e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVlp 80
Cdd:PRK11300    6 LSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV-- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 qKTDQAF----TFTVEET--VAFGRYpFQTGLFR--------QQTEKdEAIVQEA--MEQTGVADFAQKPIRELSGGEQQ 144
Cdd:PRK11300   84 -RTFQHVrlfrEMTVIENllVAQHQQ-LKTGLFSgllktpafRRAES-EALDRAAtwLERVGLLEHANRQAGNLAYGQQR 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1119636415 145 RVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPE 223
Cdd:PRK11300  161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239
ABC_Carb_Monos_II cd03215
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ...
 1-214 3.01e-16

Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.


Pssm-ID: 213182 [Multi-domain]  Cd Length: 182  Bit Score: 76.32  E-value: 3.01e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGygdsRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI-MAVL 79
Cdd:cd03215     5 LEVRGLSVK----GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAgIAYV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 PqktdqaftftvEEtvafgryPFQTGLFRQQTEKDEAIVQeameqtgvadfaqkpiRELSGGEQQRVYLAQALAQQPRIL 159
Cdd:cd03215    81 P-----------ED-------RKREGLVLDLSVAENIALS----------------SLLSGGNQQKVVLARWLARDPRVL 126

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 160 FLDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03215   127 ILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEG 180
3a01208 TIGR00958
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
 18-214 3.12e-16

Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]


Pssm-ID: 273363 [Multi-domain]  Cd Length: 711  Bit Score: 80.92  E-value: 3.12e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  18 NVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTdQAFTFTVEETVAF 97
Cdd:TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEP-VLFSGSVRENIAY 577

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  98 GRypfqtglfrQQTEKDEaiVQEAMEQTGVADFAQK-------PIRE----LSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:TIGR00958 578 GL---------TDTPDEE--IMAAAKAANAHDFIMEfpngydtEVGEkgsqLSGGQKQRIAIARALVRKPRVLILDEATS 646

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1119636415 167 FLDLAYQKDLLDLIKRltreSGLAAVSVFHDLNTASlYCDELMFMKNG 214
Cdd:TIGR00958 647 ALDAECEQLLQESRSR----ASRTVLLIAHRLSTVE-RADQILVLKKG 689
xylG TIGR02633
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ...
 16-214 3.68e-16

D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 131681 [Multi-domain]  Cd Length: 500  Bit Score: 80.25  E-value: 3.68e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAK-EGRVYLAGKLLADYKP-KELAQIMAVLPQKTDQ---AFTFT 90
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKPVDIRNPaQAIRAGIAMVPEDRKRhgiVPILG 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  91 VEETVAFGRYPFQTGLFRQQTEKDEAIVQEAMEQTGVADFAQK-PIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLD 169
Cdd:TIGR02633 356 VGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFlPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1119636415 170 LAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:TIGR02633 436 VGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEG 479
PhnL COG4778
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ...
 16-215 3.84e-16

Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];


Pssm-ID: 443809 [Multi-domain]  Cd Length: 229  Bit Score: 77.09  E-value: 3.84e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLA---GKL-LADYKPKEL-----------AQIMAVLP 80
Cdd:COG4778    27 LDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRhdgGWVdLAQASPREIlalrrrtigyvSQFLRVIP 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTdqaftftVEETVAfgrypfqTGLFRQQTEKDEAI--VQEAMEQTGV---------ADFaqkpirelSGGEQQRVYLA 149
Cdd:COG4778   107 RVS-------ALDVVA-------EPLLERGVDREEARarARELLARLNLperlwdlppATF--------SGGEQQRVNIA 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1119636415 150 QALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:COG4778   165 RGFIADPPLLLLDEPTASLDAANRAVVVELIEEA-KARGTAIIGIFHDEEVREAVADRVVDVTPFS 229
dppF PRK11308
dipeptide transporter ATP-binding subunit; Provisional
 5-219 3.88e-16

dipeptide transporter ATP-binding subunit; Provisional


Pssm-ID: 236898 [Multi-domain]  Cd Length: 327  Bit Score: 78.85  E-value: 3.88e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   5 GLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQ----IMAVL- 79
Cdd:PRK11308   20 GLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLlrqkIQIVFq 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 -------PQKTDQAftfTVEETVAFgrypfQTGLFRQQ-TEKdeaiVQEAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQ 150
Cdd:PRK11308  100 npygslnPRKKVGQ---ILEEPLLI-----NTSLSAAErREK----ALAMMAKVGLrPEHYDRYPHMFSGGQRQRIAIAR 167

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 151 ALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTA---GPK 219
Cdd:PRK11308  168 ALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCvekGTK 239
ModC COG4148
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ...
 6-214 4.01e-16

ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443319 [Multi-domain]  Cd Length: 358  Bit Score: 79.37  E-value: 4.01e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   6 LSGGYGDSRLinNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYkpkelAQIMAVLPQKTDQ 85
Cdd:COG4148     7 FRLRRGGFTL--DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDS-----ARGIFLPPHRRRI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  86 AFTF---------TVEETVAFGRypFQTGLFRQQTEKDEAIvqeamEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQP 156
Cdd:COG4148    80 GYVFqearlfphlSVRGNLLYGR--KRAPRAERRISFDEVV-----ELLGIGHLLDRRPATLSGGERQRVAIGRALLSSP 152

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:COG4148   153 RLLLMDEPLAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQG 210
NupO COG3845
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ...
 17-214 4.41e-16

ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];


Pssm-ID: 443055 [Multi-domain]  Cd Length: 504  Bit Score: 80.07  E-value: 4.41e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  17 NNVSLTVEKGEFLGILGPNGSGKttllhlltgtlPAKEGRVYLAGKLLADYKPKE--------------LAQimavlpqk 82
Cdd:COG3845    22 DDVSLTVRPGEIHALLGENGAGKstlmkilyglyQPDSGEILIDGKPVRIRSPRDaialgigmvhqhfmLVP-------- 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 tdqafTFTVEETVAFGRYPfqTGLFRQQTEKDEAIVQEAMEQTGVA-DfAQKPIRELSGGEQQRVYLAQALAQQPRILFL 161
Cdd:COG3845    94 -----NLTVAENIVLGLEP--TKGGRLDRKAARARIRELSERYGLDvD-PDAKVEDLSVGEQQRVEILKALYRGARILIL 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1119636415 162 DEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:COG3845   166 DEPTAVLTPQEADELFEILRRLAAE-GKSIIFITHKLREVMAIADRVTVLRRG 217
OpuBA COG1125
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ...
 4-214 5.88e-16

ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 440742 [Multi-domain]  Cd Length: 306  Bit Score: 78.21  E-value: 5.88e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRL-INNVSLTVEKGEFLGILGPNGSGKTTLLhlltgtlpaK---------EGRVYLAGKLLADYKPKEL- 72
Cdd:COG1125     5 ENVTKRYPDGTVaVDDLSLTIPAGEFTVLVGPSGCGKTTTL---------RminrlieptSGRILIDGEDIRDLDPVELr 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  73 -------AQImAVLPqktdqafTFTVEETVAfgrypfqT--GLFRQQTEKDEAIVQEAMEQTG--VADFAQKPIRELSGG 141
Cdd:COG1125    76 rrigyviQQI-GLFP-------HMTVAENIA-------TvpRLLGWDKERIRARVDELLELVGldPEEYRDRYPHELSGG 140

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 142 EQQRVYLAQALAQQPRILFLDEPtnF--LDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:COG1125   141 QQQRVGVARALAADPPILLMDEP--FgaLDPITREQLQDELLRLQRELGKTIVFVTHDIDEALKLGDRIAVMREG 213
ABCC_Hemolysin cd03252
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ...
 11-200 6.07e-16

ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.


Pssm-ID: 213219 [Multi-domain]  Cd Length: 237  Bit Score: 76.76  E-value: 6.07e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSRLI-NNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKEL-AQIMAVLPQKTdqAFT 88
Cdd:cd03252    12 PDGPVIlDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLrRQVGVVLQENV--LFN 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  89 FTVEETVAFGRypfqTGLFRQQtekdeaiVQEAMEQTGVADFAQKpIRE------------LSGGEQQRVYLAQALAQQP 156
Cdd:cd03252    90 RSIRDNIALAD----PGMSMER-------VIEAAKLAGAHDFISE-LPEgydtivgeqgagLSGGQRQRIAIARALIHNP 157

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLTreSGLAAVSVFHDLNT 200
Cdd:cd03252   158 RILIFDEATSALDYESEHAIMRNMHDIC--AGRTVIIIAHRLST 199
cbiO PRK13638
energy-coupling factor ABC transporter ATP-binding protein;
10-228 7.00e-16

energy-coupling factor ABC transporter ATP-binding protein;


Pssm-ID: 184198 [Multi-domain]  Cd Length: 271  Bit Score: 77.35  E-value: 7.00e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLaDYKPK---ELAQIMAVLPQKTDQA 86
Cdd:PRK13638   11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL-DYSKRgllALRQQVATVFQDPEQQ 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  87 FTFT-VEETVAFGrypfqtglFRQQTEKDEAI---VQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLD 162
Cdd:PRK13638   90 IFYTdIDSDIAFS--------LRNLGVPEAEItrrVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLD 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 163 EPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVfHDLNTASLYCDELMFMKNGTAGPKQKPE--YAVTE 228
Cdd:PRK13638  162 EPTAGLDPAGRTQMIAIIRRIVAQGNHVIISS-HDIDLIYEISDAVYVLRQGQILTHGAPGevFACTE 228
PRK15079 PRK15079
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
 16-216 7.43e-16

oligopeptide ABC transporter ATP-binding protein OppF; Provisional


Pssm-ID: 185037 [Multi-domain]  Cd Length: 331  Bit Score: 78.21  E-value: 7.43e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQImavlpqKTDQAFTF------ 89
Cdd:PRK15079   37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAV------RSDIQMIFqdplas 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  90 -----TVEETVAFGRYPFQTGLFRQQTeKDEaiVQEAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:PRK15079  111 lnprmTIGEIIAEPLRTYHPKLSRQEV-KDR--VKAMMLKVGLlPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDE 187

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1119636415 164 PTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTA 216
Cdd:PRK15079  188 PVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240
COG4674 COG4674
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...
 4-165 7.85e-16

ABC-type uncharacterized transport system, ATPase component [General function prediction only];


Pssm-ID: 443710 [Multi-domain]  Cd Length: 250  Bit Score: 76.69  E-value: 7.85e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELA--------QI 75
Cdd:COG4674    14 EDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIArlgigrkfQK 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  76 MAVLPQktdqaftFTVEE----TVAFGRYPFQTgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQA 151
Cdd:COG4674    94 PTVFEE-------LTVFEnlelALKGDRGVFAS-LFARLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEIGML 165

                         170
                  ....*....|....
gi 1119636415 152 LAQQPRILFLDEPT 165
Cdd:COG4674   166 LAQDPKLLLLDEPV 179
ccmA TIGR01189
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ...
 3-201 8.10e-16

heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]


Pssm-ID: 273491 [Multi-domain]  Cd Length: 198  Bit Score: 75.47  E-value: 8.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPkELAQIMAVLPQK 82
Cdd:TIGR01189   3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRD-EPHENILYLGHL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 TDQAFTFTVEETVAFGRYPFQTglfrqqtekDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLD 162
Cdd:TIGR01189  82 PGLKPELSALENLHFWAAIHGG---------AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILD 152

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1119636415 163 EPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTA 201
Cdd:TIGR01189 153 EPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191
PstB COG1117
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ...
 1-169 1.61e-15

ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 440734 [Multi-domain]  Cd Length: 258  Bit Score: 76.23  E-value: 1.61e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGK---------------TtllhlltgtlpAK-EGRVYLAGK-- 62
Cdd:COG1117    12 IEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKstllrclnrmndlipG-----------ARvEGEILLDGEdi 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  63 LLADYKPKEL-AQIMAVLPQKTdqAFTFTVEETVAFG-RYpfqTGLfRQQTEKDEaIVQEAMEQTG----VADFAQKPIR 136
Cdd:COG1117    81 YDPDVDVVELrRRVGMVFQKPN--PFPKSIYDNVAYGlRL---HGI-KSKSELDE-IVEESLRKAAlwdeVKDRLKKSAL 153

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1119636415 137 ELSGGEQQRVYLAQALAQQPRILFLDEPTNFLD 169
Cdd:COG1117   154 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 186
ABCC_Glucan_exporter_like cd03254
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ...
 16-215 1.96e-15

ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213221 [Multi-domain]  Cd Length: 229  Bit Score: 75.34  E-value: 1.96e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTdqaFTF--TVEE 93
Cdd:cd03254    19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDT---FLFsgTIME 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  94 TVAFGRypfqtglfrqqTEKDEAIVQEAMEQTGVADFAQK-------PIRE----LSGGEQQRVYLAQALAQQPRILFLD 162
Cdd:cd03254    96 NIRLGR-----------PNATDEEVIEAAKEAGAHDFIMKlpngydtVLGEnggnLSQGERQLLAIARAMLRDPKILILD 164

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 163 EPTNFLD----LAYQKDLLDLIKRLTresglaAVSVFHDLNTAsLYCDELMFMKNGT 215
Cdd:cd03254   165 EATSNIDteteKLIQEALEKLMKGRT------SIIIAHRLSTI-KNADKILVLDDGK 214
YddA COG4178
ABC-type uncharacterized transport system, permease and ATPase components [General function ...
 12-196 2.15e-15

ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];


Pssm-ID: 443337 [Multi-domain]  Cd Length: 571  Bit Score: 78.31  E-value: 2.15e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  12 DSRLINNVSLTVEKGEFLGILGPNGSGKttllhlltgtlPAKEGRVYLagklladykPkELAQIMaVLPQKT-------D 84
Cdd:COG4178   375 GRPLLEDLSLSLKPGERLLITGPSGSGKstllraiaglwPYGSGRIAR---------P-AGARVL-FLPQRPylplgtlR 443

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  85 QAFTftveetvafgrYPFQTGLFrqqtekDEAIVQEAMEQTGVADFAQKP------IRELSGGEQQRVYLAQALAQQPRI 158
Cdd:COG4178   444 EALL-----------YPATAEAF------SDAELREALEAVGLGHLAERLdeeadwDQVLSLGEQQRLAFARLLLHKPDW 506

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1119636415 159 LFLDEPTNFLDLAYQKDLLDLIKRLTRESGLaaVSVFH 196
Cdd:COG4178   507 LFLDEATSALDEENEAALYQLLREELPGTTV--ISVGH 542
PRK10070 PRK10070
proline/glycine betaine ABC transporter ATP-binding protein ProV;
11-214 2.26e-15

proline/glycine betaine ABC transporter ATP-binding protein ProV;


Pssm-ID: 182221 [Multi-domain]  Cd Length: 400  Bit Score: 77.38  E-value: 2.26e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAFTF- 89
Cdd:PRK10070   39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALm 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  90 ---TVEETVAFGrypFQTGLFRQQTEKDEAIvqEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:PRK10070  119 phmTVLDNTAFG---MELAGINAEERREKAL--DALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFS 193

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1119636415 167 FLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK10070  194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241
PRK14247 PRK14247
phosphate ABC transporter ATP-binding protein; Provisional
 1-231 2.52e-15

phosphate ABC transporter ATP-binding protein; Provisional


Pssm-ID: 172735 [Multi-domain]  Cd Length: 250  Bit Score: 75.33  E-value: 2.52e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHL-----LTGTLPAKEGRVYLAGKLLADYKPKELAQI 75
Cdd:PRK14247    4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVfnrliELYPEARVSGEVYLDGQDIFKMDVIELRRR 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  76 MAVLPQKTDQAFTFTVEETVAFGryPFQTGLFRQQTEKDEAiVQEAMEQTG----VADFAQKPIRELSGGEQQRVYLAQA 151
Cdd:PRK14247   84 VQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSKKELQER-VRWALEKAQlwdeVKDRLDAPAGKLSGGQQQRLCIARA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 152 LAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTREsgLAAVSVFHDLNTASLYCDELMFMKNGT---AGPKQ----KPEY 224
Cdd:PRK14247  161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQiveWGPTRevftNPRH 238


                  ....*..
gi 1119636415 225 AVTEQSI 231
Cdd:PRK14247  239 ELTEKYV 245
met_CoM_red_A2 TIGR03269
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ...
 14-228 2.58e-15

methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]


Pssm-ID: 132313 [Multi-domain]  Cd Length: 520  Bit Score: 77.92  E-value: 2.58e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  14 RLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVY-LAGKLLADY-KPKEL-----AQIMAVLPQKtdqa 86
Cdd:TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNvRVGDEWVDMtKPGPDgrgraKRYIGILHQE---- 373

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  87 ftftveetvaFGRYPFQTGLfRQQTEK------DEAIVQEAMEQTGVADFAQKPIR--------ELSGGEQQRVYLAQAL 152
Cdd:TIGR03269 374 ----------YDLYPHRTVL-DNLTEAiglelpDELARMKAVITLKMVGFDEEKAEeildkypdELSEGERHRVALAQVL 442

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1119636415 153 AQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPEYAVTE 228
Cdd:TIGR03269 443 IKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
ABC_MTABC3_MDL1_MDL2 cd03249
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ...
 12-214 3.47e-15

ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.


Pssm-ID: 213216 [Multi-domain]  Cd Length: 238  Bit Score: 74.88  E-value: 3.47e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  12 DSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTdQAFTFTV 91
Cdd:cd03249    15 DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEP-VLFDGTI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  92 EETVAFGRYPfqtglfRQQTEkdeaiVQEAMEQTGVADFAQK-PIR----------ELSGGEQQRVYLAQALAQQPRILF 160
Cdd:cd03249    94 AENIRYGKPD------ATDEE-----VEEAAKKANIHDFIMSlPDGydtlvgergsQLSGGQKQRIAIARALLRNPKILL 162

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 161 LDEPTNFLDLAYQKDLLDLIKRLTResGLAAVSVFHDLNTASlYCDELMFMKNG 214
Cdd:cd03249   163 LDEATSALDAESEKLVQEALDRAMK--GRTTIVIAHRLSTIR-NADLIAVLQNG 213
ABC_KpsT_Wzt cd03220
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ...
 8-214 3.53e-15

ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.


Pssm-ID: 213187 [Multi-domain]  Cd Length: 224  Bit Score: 74.49  E-value: 3.53e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   8 GGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLAdykPKELAqiMAVLPQktdqaf 87
Cdd:cd03220    30 GEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS---LLGLG--GGFNPE------ 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  88 tFTVEETVAF-GRypfqtgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:cd03220    99 -LTGRENIYLnGR------LLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLA 171

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1119636415 167 FLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:cd03220   172 VGDAAFQEKCQRRLREL-LKQGKTVILVSHDPSSIKRLCDRALVLEKG 218
metN PRK11153
DL-methionine transporter ATP-binding subunit; Provisional
 17-214 3.61e-15

DL-methionine transporter ATP-binding subunit; Provisional


Pssm-ID: 236863 [Multi-domain]  Cd Length: 343  Bit Score: 76.38  E-value: 3.61e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  17 NNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELA----QIMAVLpqktdQAFTF--- 89
Cdd:PRK11153   22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRkarrQIGMIF-----QHFNLlss 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  90 -TVEETVAFgryPfqtgLFRQQTEKDE--AIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:PRK11153   97 rTVFDNVAL---P----LELAGTPKAEikARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATS 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1119636415 167 FLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK11153  170 ALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAG 217
3a01204 TIGR00955
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ...
 13-214 8.11e-15

The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]


Pssm-ID: 273361 [Multi-domain]  Cd Length: 617  Bit Score: 76.62  E-value: 8.11e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  13 SRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPA---KEGRVYLAGKLLadyKPKELAQIMAVLPQktDQAF-- 87
Cdd:TIGR00955  38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKgvkGSGSVLLNGMPI---DAKEMRAISAYVQQ--DDLFip 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  88 TFTVEETVAFgrypfqTGLFR--QQTEKDE--AIVQEAMEQTGVADFAQKPI------RELSGGEQQRVYLAQALAQQPR 157
Cdd:TIGR00955 113 TLTVREHLMF------QAHLRmpRRVTKKEkrERVDEVLQALGLRKCANTRIgvpgrvKGLSGGERKRLAFASELLTDPP 186

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119636415 158 ILFLDEPTNFLD--LAYQkdLLDLIKRLTrESGLAAVSVFHDlNTASLYC--DELMFMKNG 214
Cdd:TIGR00955 187 LLFCDEPTSGLDsfMAYS--VVQVLKGLA-QKGKTIICTIHQ-PSSELFElfDKIILMAEG 243
cbiO PRK13646
energy-coupling factor transporter ATPase;
16-215 9.10e-15

energy-coupling factor transporter ATPase;


Pssm-ID: 184205 [Multi-domain]  Cd Length: 286  Bit Score: 74.43  E-value: 9.10e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAG-KLLADYKPKELAQIMA----VLPQKTDQAFTFT 90
Cdd:PRK13646   23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDiTITHKTKDKYIRPVRKrigmVFQFPESQLFEDT 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  91 VEETVAFGRYPFQTGLfrqQTEKDEAIvQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDL 170
Cdd:PRK13646  103 VEREIIFGPKNFKMNL---DEVKNYAH-RLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1119636415 171 AYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:PRK13646  179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGS 223
PRK10619 PRK10619
histidine ABC transporter ATP-binding protein HisP;
10-223 1.06e-14

histidine ABC transporter ATP-binding protein HisP;


Pssm-ID: 182592 [Multi-domain]  Cd Length: 257  Bit Score: 73.85  E-value: 1.06e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGK---LLADYK------PKELAQIMAVLP 80
Cdd:PRK10619   15 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQtinLVRDKDgqlkvaDKNQLRLLRTRL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTF----TVEETVAfgRYPFQTGLFRQQTEKDEAIvqEAMEQTGVADFAQ-KPIRELSGGEQQRVYLAQALAQQ 155
Cdd:PRK10619   95 TMVFQHFNLwshmTVLENVM--EAPIQVLGLSKQEARERAV--KYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAME 170

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 156 PRILFLDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPE 223
Cdd:PRK10619  171 PEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPE 237
PRK14239 PRK14239
phosphate transporter ATP-binding protein; Provisional
 1-214 1.08e-14

phosphate transporter ATP-binding protein; Provisional


Pssm-ID: 184585 [Multi-domain]  Cd Length: 252  Bit Score: 73.66  E-value: 1.08e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEgRVYLAGKLLAD----YKPK----EL 72
Cdd:PRK14239    6 LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNP-EVTITGSIVYNghniYSPRtdtvDL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  73 AQIMAVLPQKTDqAFTFTVEETVAFGrypfqtglFRQQTEKDEAIVQEAMEQT--------GVADFAQKPIRELSGGEQQ 144
Cdd:PRK14239   85 RKEIGMVFQQPN-PFPMSIYENVVYG--------LRLKGIKDKQVLDEAVEKSlkgasiwdEVKDRLHDSALGLSGGQQQ 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 145 RVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSvfHDLNTASLYCDELMFMKNG 214
Cdd:PRK14239  156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT--RSMQQASRISDRTGFFLDG 223
PRK14267 PRK14267
phosphate ABC transporter ATP-binding protein; Provisional
 10-229 1.09e-14

phosphate ABC transporter ATP-binding protein; Provisional


Pssm-ID: 184596 [Multi-domain]  Cd Length: 253  Bit Score: 73.72  E-value: 1.09e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHL----LTGTLPAK-EGRVYLAGKLL--ADYKPKELAQIMAVLPQK 82
Cdd:PRK14267   14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTfnrlLELNEEARvEGEVRLFGRNIysPDVDPIEVRREVGMVFQY 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 TDQAFTFTVEETVAFG-RYpfqTGLFRQQTEKDEaIVQEAMEQTGVADFAQKPIRE----LSGGEQQRVYLAQALAQQPR 157
Cdd:PRK14267   94 PNPFPHLTIYDNVAIGvKL---NGLVKSKKELDE-RVEWALKKAALWDEVKDRLNDypsnLSGGQRQRLVIARALAMKPK 169

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1119636415 158 ILFLDEPTNFLDLAYQKDLLDLIKRLTREsgLAAVSVFHDLNTASLYCDELMFMKNGT---AGPKQK----PEYAVTEQ 229
Cdd:PRK14267  170 ILLMDEPTANIDPVGTAKIEELLFELKKE--YTIVLVTHSPAQAARVSDYVAFLYLGKlieVGPTRKvfenPEHELTEK 246
PRK11264 PRK11264
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
 4-214 1.12e-14

putative amino-acid ABC transporter ATP-binding protein YecC; Provisional


Pssm-ID: 183063 [Multi-domain]  Cd Length: 250  Bit Score: 73.63  E-value: 1.12e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLaGKLLADyKPKELAQIMAVLPQKT 83
Cdd:PRK11264    7 KNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV-GDITID-TARSLSQQKGLIRQLR 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  84 DQA-FTFTveetvAFGRYPFQTGL--------FRQQTEKDEAIV--QEAMEQTGVADFAQKPIRELSGGEQQRVYLAQAL 152
Cdd:PRK11264   85 QHVgFVFQ-----NFNLFPHRTVLeniiegpvIVKGEPKEEATAraRELLAKVGLAGKETSYPRRLSGGQQQRVAIARAL 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 153 AQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESgLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK11264  160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK-RTMVIVTHEMSFARDVADRAIFMDQG 220
PRK13538 PRK13538
cytochrome c biogenesis heme-transporting ATPase CcmA;
11-202 1.55e-14

cytochrome c biogenesis heme-transporting ATPase CcmA;


Pssm-ID: 184125 [Multi-domain]  Cd Length: 204  Bit Score: 72.14  E-value: 1.55e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPkELAQIMAVLPQ----KTDqa 86
Cdd:PRK13538   12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRD-EYHQDLLYLGHqpgiKTE-- 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  87 ftFTVEETVAFgrypfqtgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:PRK13538   89 --LTALENLRF--------YQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFT 158

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1119636415 167 FLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTAS 202
Cdd:PRK13538  159 AIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194
dppD PRK11022
dipeptide transporter ATP-binding subunit; Provisional
 1-198 1.58e-14

dipeptide transporter ATP-binding subunit; Provisional


Pssm-ID: 182906 [Multi-domain]  Cd Length: 326  Bit Score: 74.39  E-value: 1.58e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDS----RLINNVSLTVEKGEFLGILGPNGSGKTTLLHlltgtlpAKEGRVYLAGKLLAD---------- 66
Cdd:PRK11022    4 LNVDKLSVHFGDEsapfRAVDRISYSVKQGEVVGIVGESGSGKSVSSL-------AIMGLIDYPGRVMAEklefngqdlq 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  67 -YKPKELAQI----MAVLPQK--TDQAFTFTVEETVAFGRYPFQTGlfRQQTEKDEAIvqEAMEQTGVADFAQK----Pi 135
Cdd:PRK11022   77 rISEKERRNLvgaeVAMIFQDpmTSLNPCYTVGFQIMEAIKVHQGG--NKKTRRQRAI--DLLNQVGIPDPASRldvyP- 151

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119636415 136 RELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDL 198
Cdd:PRK11022  152 HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL 214
PRK14243 PRK14243
phosphate transporter ATP-binding protein; Provisional
 1-210 2.07e-14

phosphate transporter ATP-binding protein; Provisional


Pssm-ID: 184588 [Multi-domain]  Cd Length: 264  Bit Score: 72.89  E-value: 2.07e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTL-----LHLLTGTLPAKEGRVYLAGKLL--ADYKPKELA 73
Cdd:PRK14243   11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTIlrcfnRLNDLIPGFRVEGKVTFHGKNLyaPDVDPVEVR 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  74 QIMAVLPQKTDqAFTFTVEETVAFGryPFQTGLfrqQTEKDEaIVQEAMEQTGVADFAQKPIRE----LSGGEQQRVYLA 149
Cdd:PRK14243   91 RRIGMVFQKPN-PFPKSIYDNIAYG--ARINGY---KGDMDE-LVERSLRQAALWDEVKDKLKQsglsLSGGQQQRLCIA 163

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119636415 150 QALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLaaVSVFHDLNTASLYCDELMF 210
Cdd:PRK14243  164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTI--IIVTHNMQQAARVSDMTAF 222
PRK13539 PRK13539
cytochrome c biogenesis protein CcmA; Provisional
 3-202 2.12e-14

cytochrome c biogenesis protein CcmA; Provisional


Pssm-ID: 237421 [Multi-domain]  Cd Length: 207  Bit Score: 71.83  E-value: 2.12e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIM----AV 78
Cdd:PRK13539    5 GEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLghrnAM 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 LPqktdqafTFTVEETVAFGRypfqtGLFRQqtekDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRI 158
Cdd:PRK13539   85 KP-------ALTVAENLEFWA-----AFLGG----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI 148

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1119636415 159 LFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTAS 202
Cdd:PRK13539  149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192
PRK15064 PRK15064
ABC transporter ATP-binding protein; Provisional
 3-170 2.35e-14

ABC transporter ATP-binding protein; Provisional


Pssm-ID: 237894 [Multi-domain]  Cd Length: 530  Bit Score: 74.93  E-value: 2.35e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVylagklladyKPKELAQImAVLPQk 82
Cdd:PRK15064  322 VENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV----------KWSENANI-GYYAQ- 389

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 tDQAFTFTVEETVafgrypFQ-TGLFRQQTEKDEAIvqeameqTGV-------ADFAQKPIRELSGGEQQRVYLAQALAQ 154
Cdd:PRK15064  390 -DHAYDFENDLTL------FDwMSQWRQEGDDEQAV-------RGTlgrllfsQDDIKKSVKVLSGGEKGRMLFGKLMMQ 455

                         170
                  ....*....|....*.
gi 1119636415 155 QPRILFLDEPTNFLDL 170
Cdd:PRK15064  456 KPNVLVMDEPTNHMDM 471
CbiZ COG1865
Adenosylcobinamide amidohydrolase [Coenzyme transport and metabolism];
276-440 2.68e-14

Adenosylcobinamide amidohydrolase [Coenzyme transport and metabolism];


Pssm-ID: 441470  Cd Length: 224  Bit Score: 71.83  E-value: 2.68e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 276 RDDILLQTEIPLRTLSSTPIGAGFSWSRTLIHKRLP---DQPDPIEGLTACLSESGFQLQETCAMASSERLDHFVYRTYE 352
Cdd:COG1865    11 DGVLVVRFPGPRRVLSTAVLNGGLREARAVFNHQVPedyDRTDPEEYLAEVLARLGLPPGDTVGLLTAADMENAAIAEES 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 353 DGELSVFICVQTGFS------------------------IWILINGYAADQFFIKALM-AAEAeRTKVLGD--------- 398
Cdd:COG1865    91 FGGLSVTAVVTAGVSnavragadpasyyeprppppgtinIIVLINAPLSDGALVNAVItATEA-KTAALQElgigsrysg 169

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 399 GRGTG---D-ILIAATqtqQSENIEQ------RLNQLIKKGTAECVKEAAEL 440
Cdd:COG1865   170 GLATGtgtDaIAVAAP---PDGEPLTyagkhtKLGELIGRAVYEAVREALRR 218
PRK10762 PRK10762
D-ribose transporter ATP binding protein; Provisional
 1-194 4.25e-14

D-ribose transporter ATP binding protein; Provisional


Pssm-ID: 236755 [Multi-domain]  Cd Length: 501  Bit Score: 73.88  E-value: 4.25e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSG-GygdsrlINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE-LAQIMAV 78
Cdd:PRK10762  258 LKVDNLSGpG------VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDgLANGIVY 331

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 LPQ--KTDQ-AFTFTVEETVAFgrypfqTGLfrQQTEKDEAIVQEAMEQTGVADFAQ----------KPIRELSGGEQQR 145
Cdd:PRK10762  332 ISEdrKRDGlVLGMSVKENMSL------TAL--RYFSRAGGSLKHADEQQAVSDFIRlfniktpsmeQAIGLLSGGNQQK 403

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1119636415 146 VYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSV 194
Cdd:PRK10762  404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILV 451
ABC_RNaseL_inhibitor_domain2 cd03237
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ...
 20-220 4.69e-14

The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.


Pssm-ID: 213204 [Multi-domain]  Cd Length: 246  Bit Score: 71.67  E-value: 4.69e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  20 SLTVEKGEF-----LGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLAdYKPKelaQIMAVLPQKTDQaftFTVEET 94
Cdd:cd03237    14 TLEVEGGSIsesevIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-YKPQ---YIKADYEGTVRD---LLSSIT 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  95 VAFGRYP-FQTglfrqqtekdeaivqEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQ 173
Cdd:cd03237    87 KDFYTHPyFKT---------------EIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQR 151

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 174 KDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFM-----KNGTAGPKQ 220
Cdd:cd03237   152 LMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFegepsVNGVANPPQ 203
PRK10261 PRK10261
glutathione transporter ATP-binding protein; Provisional
 16-289 6.82e-14

glutathione transporter ATP-binding protein; Provisional


Pssm-ID: 182342 [Multi-domain]  Cd Length: 623  Bit Score: 73.74  E-value: 6.82e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLL----------ADYKPKELAQI----MAVLPQ 81
Cdd:PRK10261   32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLrrrsrqvielSEQSAAQMRHVrgadMAMIFQ 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 K--TDQAFTFTVEETVAfgrypfQTGLFRQQTEKDEAIVQ--EAMEQTGVAD----FAQKPiRELSGGEQQRVYLAQALA 153
Cdd:PRK10261  112 EpmTSLNPVFTVGEQIA------ESIRLHQGASREEAMVEakRMLDQVRIPEaqtiLSRYP-HQLSGGMRQRVMIAMALS 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 154 QQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTA---GPKQK----PEYAV 226
Cdd:PRK10261  185 CRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAvetGSVEQifhaPQHPY 264

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1119636415 227 TEQSIKAVydTDVTALVHQSSPK--PMIVI-QPEKDSVKQQS---IPFEALLQAgRDdilLQTEIPLRT 289
Cdd:PRK10261  265 TRALLAAV--PQLGAMKGLDYPRrfPLISLeHPAKQEPPIEQdtvVDGEPILQV-RN---LVTRFPLRS 327
PhnK COG1101
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...
 14-214 7.13e-14

ABC-type uncharacterized transport system, ATPase component [General function prediction only];


Pssm-ID: 440718 [Multi-domain]  Cd Length: 264  Bit Score: 71.27  E-value: 7.13e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  14 RLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKL---LADYKpkeLAQIMAVLPQ--KTDQAFT 88
Cdd:COG1101    20 RALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDvtkLPEYK---RAKYIGRVFQdpMMGTAPS 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  89 FTVEE--TVAFGRyPFQTGLFRQQTEKDEAIVQEAMEQT--GVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEP 164
Cdd:COG1101    97 MTIEEnlALAYRR-GKRRGLRRGLTKKRRELFRELLATLglGLENRLDTKVGLLSGGQRQALSLLMATLTKPKLLLLDEH 175

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1119636415 165 TNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:COG1101   176 TAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEG 225
ATM1 COG5265
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ...
 4-185 1.31e-13

ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444078 [Multi-domain]  Cd Length: 605  Bit Score: 72.93  E-value: 1.31e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLI-NNVSLTVEKGEFLGILGPNGSGKTTLlhlltgtlpAK---------EGRVYLAGKLLADYKPKELA 73
Cdd:COG5265   361 ENVSFGYDPERPIlKGVSFEVPAGKTVAIVGPSGAGKSTL---------ARllfrfydvtSGRILIDGQDIRDVTQASLR 431

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  74 QIMAVLPQKTdQAFTFTVEETVAFGRypfqtglfrqqTEKDEAIVQEAMEQTGVADFaqkpIRE---------------L 138
Cdd:COG5265   432 AAIGIVPQDT-VLFNDTIAYNIAYGR-----------PDASEEEVEAAARAAQIHDF----IESlpdgydtrvgerglkL 495

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1119636415 139 SGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTR 185
Cdd:COG5265   496 SGGEKQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVAR 542
ABC_FeS_Assembly cd03217
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ...
 11-196 1.32e-13

ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.


Pssm-ID: 213184 [Multi-domain]  Cd Length: 200  Bit Score: 69.09  E-value: 1.32e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAK--EGRVYLAGKLLADYKPKELAQiMAVlpqktdqaft 88
Cdd:cd03217    11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEvtEGEILFKGEDITDLPPEERAR-LGI---------- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  89 ftveeTVAFgrypfqtglfrqqtekdeaivQEAMEQTGV--ADFaqkpIREL----SGGEQQRVYLAQALAQQPRILFLD 162
Cdd:cd03217    80 -----FLAF---------------------QYPPEIPGVknADF----LRYVnegfSGGEKKRNEILQLLLLEPDLAILD 129

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1119636415 163 EPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFH 196
Cdd:cd03217   130 EPDSGLDIDALRLVAEVINKL-REEGKSVLIITH 162
HisP COG4598
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
10-214 2.50e-13

ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443652 [Multi-domain]  Cd Length: 259  Bit Score: 69.83  E-value: 2.50e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLL------------ADykPKELAQIMA 77
Cdd:COG4598    18 FGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIrlkpdrdgelvpAD--RRQLQRIRT 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  78 VLpqktdqAFTF---------TVEETVAFGryPFQTglfrQQTEKDEAIVQ-EAM-EQTGVADFAQKPIRELSGGEQQRV 146
Cdd:COG4598    96 RL------GMVFqsfnlwshmTVLENVIEA--PVHV----LGRPKAEAIERaEALlAKVGLADKRDAYPAHLSGGQQQRA 163

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 147 YLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:COG4598   164 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEE-GRTMLVVTHEMGFARDVSSHVVFLHQG 230
PRK13549 PRK13549
xylose transporter ATP-binding subunit; Provisional
 14-194 5.42e-13

xylose transporter ATP-binding subunit; Provisional


Pssm-ID: 184134 [Multi-domain]  Cd Length: 506  Bit Score: 70.73  E-value: 5.42e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  14 RLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLP-AKEGRVYLAGKLLADYKPKE-LAQIMAVLPQ--KTD----- 84
Cdd:PRK13549  276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGKPVKIRNPQQaIAQGIAMVPEdrKRDgivpv 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  85 ----QAFTFTVEETVAFGRypfqtglfRQQTEKDEAIVQEAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQALAQQPRIL 159
Cdd:PRK13549  356 mgvgKNITLAALDRFTGGS--------RIDDAAELKTILESIQRLKVkTASPELAIARLSGGNQQKAVLAKCLLLNPKIL 427

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1119636415 160 FLDEPTNFLDLAYQKDLLDLIKRLTREsGLAAVSV 194
Cdd:PRK13549  428 ILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVI 461
ABC_ABC_ChvD TIGR03719
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ...
 1-169 5.57e-13

ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.


Pssm-ID: 274744 [Multi-domain]  Cd Length: 552  Bit Score: 70.73  E-value: 5.57e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTllhlltgtlpakegrvylagklladykpkeLAQIMAvlP 80
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKST------------------------------LFRMIT--G 370

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTFTVEETVAFGrYPFQTglfRQQTEKDEAIVQEAME-----QTG---------VADFA------QKPIRELSG 140
Cdd:TIGR03719 371 QEQPDSGTIEIGETVKLA-YVDQS---RDALDPNKTVWEEISGgldiiKLGkreipsrayVGRFNfkgsdqQKKVGQLSG 446

                         170       180
                  ....*....|....*....|....*....
gi 1119636415 141 GEQQRVYLAQALAQQPRILFLDEPTNFLD 169
Cdd:TIGR03719 447 GERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
ABCC_MRP_domain2 cd03244
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ...
 16-215 5.66e-13

ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.


Pssm-ID: 213211 [Multi-domain]  Cd Length: 221  Bit Score: 67.90  E-value: 5.66e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTdQAFTFTVEETV 95
Cdd:cd03244    20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDP-VLFSGTIRSNL 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  96 A-FGRYPfqtglfrqqtekDEAIvQEAMEQTGVADFAQK-------PIRE----LSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:cd03244    99 DpFGEYS------------DEEL-WQALERVGLKEFVESlpggldtVVEEggenLSVGQRQLLCLARALLRKSKILVLDE 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1119636415 164 PTNFLDlaYQKDllDLIKRLTRESgLAAVSVF---HDLNTAsLYCDELMFMKNGT 215
Cdd:cd03244   166 ATASVD--PETD--ALIQKTIREA-FKDCTVLtiaHRLDTI-IDSDRILVLDKGR 214
ABCC_NFT1 cd03369
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ...
 1-214 9.03e-13

ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.


Pssm-ID: 213269 [Multi-domain]  Cd Length: 207  Bit Score: 67.05  E-value: 9.03e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGD--SRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAV 78
Cdd:cd03369     7 IEVENLSVRYAPdlPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 LPQKTdQAFTFTVEETV-AFGRYpfqtglfrqqtekDEAIVQEAMEQTGVADfaqkpirELSGGEQQRVYLAQALAQQPR 157
Cdd:cd03369    87 IPQDP-TLFSGTIRSNLdPFDEY-------------SDEEIYGALRVSEGGL-------NLSQGQRQLLCLARALLKRPR 145

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1119636415 158 ILFLDEPTNFLDlaYQKDLldLIKRLTRE--SGLAAVSVFHDLNTAsLYCDELMFMKNG 214
Cdd:cd03369   146 VLVLDEATASID--YATDA--LIQKTIREefTNSTILTIAHRLRTI-IDYDKILVMDAG 199
PRK11000 PRK11000
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
10-197 1.22e-12

maltose/maltodextrin ABC transporter ATP-binding protein MalK;


Pssm-ID: 182893 [Multi-domain]  Cd Length: 369  Bit Score: 68.90  E-value: 1.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE-----LAQIMAVLPQktd 84
Cdd:PRK11000   13 YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAErgvgmVFQSYALYPH--- 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  85 qaftFTVEETVAFgrypfqtGLFRQQTEKDEaiVQEAMEQtgVADFAQ-------KPiRELSGGEQQRVYLAQALAQQPR 157
Cdd:PRK11000   90 ----LSVAENMSF-------GLKLAGAKKEE--INQRVNQ--VAEVLQlahlldrKP-KALSGGQRQRVAIGRTLVAEPS 153

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1119636415 158 ILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHD 197
Cdd:PRK11000  154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
oppD PRK09473
oligopeptide transporter ATP-binding component; Provisional
 11-214 1.24e-12

oligopeptide transporter ATP-binding component; Provisional


Pssm-ID: 181888 [Multi-domain]  Cd Length: 330  Bit Score: 68.60  E-value: 1.24e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLpAKEGRV----YLAGKLLADYKPKELAQIMAvlpqktdqa 86
Cdd:PRK09473   27 GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL-AANGRIggsaTFNGREILNLPEKELNKLRA--------- 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  87 ftftveETVAFgryPFQ---TGL------FRQQTE---------KDEAiVQEAMEQTGVADF--AQKPIR----ELSGGE 142
Cdd:PRK09473   97 ------EQISM---IFQdpmTSLnpymrvGEQLMEvlmlhkgmsKAEA-FEESVRMLDAVKMpeARKRMKmyphEFSGGM 166

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 143 QQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK09473  167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAG 238
SapD COG4170
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
14-296 1.28e-12

ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];


Pssm-ID: 443330 [Multi-domain]  Cd Length: 331  Bit Score: 68.39  E-value: 1.28e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  14 RLINNVSLTVEKGEFLGILGPNGSGKTTLlhlltgtlpAK-------------EGRVYLAGKLLADYKPKELAQIM---- 76
Cdd:COG4170    21 KAVDRVSLTLNEGEIRGLVGESGSGKSLI---------AKaicgitkdnwhvtADRFRWNGIDLLKLSPRERRKIIgrei 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  77 AVL---------PQKT--DQaftftVEETVAFGRYpfqTGLF--RQQTEKDEAIvqEAMEQTGVADfaQKPIR-----EL 138
Cdd:COG4170    92 AMIfqepsscldPSAKigDQ-----LIEAIPSWTF---KGKWwqRFKWRKKRAI--ELLHRVGIKD--HKDIMnsyphEL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 139 SGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGtagp 218
Cdd:COG4170   160 TEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCG---- 235

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 219 kQKPEYAVTEQSIKAVYDTDVTALVHqSSPKpmiviqpekdsvKQQSIPFEALLQAgrddilLQTEIPlrTLSSTPIG 296
Cdd:COG4170   236 -QTVESGPTEQILKSPHHPYTKALLR-SMPD------------FRQPLPHKSRLNT------LPGSIP--PLQHLPIG 291
met_CoM_red_A2 TIGR03269
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ...
 1-196 1.84e-12

methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]


Pssm-ID: 132313 [Multi-domain]  Cd Length: 520  Bit Score: 69.06  E-value: 1.84e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLL--TGTLPAKEGRV-----------YL-------- 59
Cdd:TIGR03269   1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLrgMDQYEPTSGRIiyhvalcekcgYVerpskvge 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  60 -----AGKL---------LADYKPKELAQIMAVLPQKTdqaFTFTVEETVAFGrypFQTGLFRQQTEKDEAIVQ--EAME 123
Cdd:TIGR03269  81 pcpvcGGTLepeevdfwnLSDKLRRRIRKRIAIMLQRT---FALYGDDTVLDN---VLEALEEIGYEGKEAVGRavDLIE 154

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119636415 124 QTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFH 196
Cdd:TIGR03269 155 MVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227
NupO COG3845
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ...
 2-209 2.15e-12

ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];


Pssm-ID: 443055 [Multi-domain]  Cd Length: 504  Bit Score: 68.90  E-value: 2.15e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   2 KAEGLS--GGYGDSRLiNNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI-MAV 78
Cdd:COG3845   259 EVENLSvrDDRGVPAL-KDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLgVAY 337

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 LP---QKTDQAFTFTVEETVAFGRY---PFQTGLF-RQQTEKDEAivQEAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQ 150
Cdd:COG3845   338 IPedrLGRGLVPDMSVAENLILGRYrrpPFSRGGFlDRKAIRAFA--EELIEEFDVrTPGPDTPARSLSGGNQQKVILAR 415

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 151 ALAQQPRILFLDEPTNFLDLA-----YQKdLLDLikrltRESGLAAVSVFHDLntaslycDELM 209
Cdd:COG3845   416 ELSRDPKLLIAAQPTRGLDVGaiefiHQR-LLEL-----RDAGAAVLLISEDL-------DEIL 466
ABC_RNaseL_inhibitor_domain1 cd03236
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ...
 22-198 3.05e-12

The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.


Pssm-ID: 213203 [Multi-domain]  Cd Length: 255  Bit Score: 66.24  E-value: 3.05e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  22 TVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRV-----------YLAGKLLADYKPKELAQIM--AVLPQKTDQ--- 85
Cdd:cd03236    22 VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFddppdwdeildEFRGSELQNYFTKLLEGDVkvIVKPQYVDLipk 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  86 AFTFTVEEtvafgrypfqtgLFRQQTEKDEaiVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPT 165
Cdd:cd03236   102 AVKGKVGE------------LLKKKDERGK--LDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPS 167

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1119636415 166 NFLDLAYQKDLLDLIKRLTREsGLAAVSVFHDL 198
Cdd:cd03236   168 SYLDIKQRLNAARLIRELAED-DNYVLVVEHDL 199
MsbA_lipidA TIGR02203
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ...
 11-214 3.19e-12

lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]


Pssm-ID: 131258 [Multi-domain]  Cd Length: 571  Bit Score: 68.20  E-value: 3.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSR-LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKpkeLAQIMAVLPQKTDQAFTF 89
Cdd:TIGR02203 342 GRDRpALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT---LASLRRQVALVSQDVVLF 418

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  90 --TVEETVAFGRypfqtglfrqQTEKDEAIVQEAMEQTGVADFA-------QKPIRE----LSGGEQQRVYLAQALAQQP 156
Cdd:TIGR02203 419 ndTIANNIAYGR----------TEQADRAEIERALAAAYAQDFVdklplglDTPIGEngvlLSGGQRQRLAIARALLKDA 488

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLTResGLAAVSVFHDLNTASlYCDELMFMKNG 214
Cdd:TIGR02203 489 PILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIE-KADRIVVMDDG 543
cbiO PRK13631
cobalt transporter ATP-binding subunit; Provisional
 16-214 3.25e-12

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 237451 [Multi-domain]  Cd Length: 320  Bit Score: 67.18  E-value: 3.25e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRV-----YLAGKLLADYKP-----------KELAQIMAVL 79
Cdd:PRK13631   42 LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdiYIGDKKNNHELItnpyskkiknfKELRRRVSMV 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 PQKTD-QAFTFTVEETVAFGryPFQTGLFRQQTEKDEAIVQEAMeqtGV-ADFAQKPIRELSGGEQQRVYLAQALAQQPR 157
Cdd:PRK13631  122 FQFPEyQLFKDTIEKDIMFG--PVALGVKKSEAKKLAKFYLNKM---GLdDSYLERSPFGLSGGQKRRVAIAGILAIQPE 196

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 158 ILFLDEPTNFLDLAYQKDLLDLIKRlTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK13631  197 ILIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITHTMEHVLEVADEVIVMDKG 252
PRK15093 PRK15093
peptide ABC transporter ATP-binding protein SapD;
137-246 4.90e-12

peptide ABC transporter ATP-binding protein SapD;


Pssm-ID: 185049 [Multi-domain]  Cd Length: 330  Bit Score: 66.75  E-value: 4.90e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 137 ELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG-- 214
Cdd:PRK15093  158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGqt 237

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1119636415 215 --TAGPKQ---KPEYAVTEQSIKAVYDTDvTALVHQS 246
Cdd:PRK15093  238 veTAPSKElvtTPHHPYTQALIRAIPDFG-SAMPHKS 273
PRK11831 PRK11831
phospholipid ABC transporter ATP-binding protein MlaF;
5-198 8.13e-12

phospholipid ABC transporter ATP-binding protein MlaF;


Pssm-ID: 236997 [Multi-domain]  Cd Length: 269  Bit Score: 65.17  E-value: 8.13e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   5 GLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI---MAVLPQ 81
Cdd:PRK11831   12 GVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVrkrMSMLFQ 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 kTDQAFT-FTVEETVAfgrYPfqtglFRQQTEKDEAIVQEA----MEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQP 156
Cdd:PRK11831   92 -SGALFTdMNVFDNVA---YP-----LREHTQLPAPLLHSTvmmkLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDL 198
Cdd:PRK11831  163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV 204
araG PRK11288
L-arabinose ABC transporter ATP-binding protein AraG;
1-231 1.21e-11

L-arabinose ABC transporter ATP-binding protein AraG;


Pssm-ID: 183077 [Multi-domain]  Cd Length: 501  Bit Score: 66.47  E-value: 1.21e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGygdsRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE-LAQIMAVL 79
Cdd:PRK11288  258 LRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDaIRAGIMLC 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 PQ--KTDQAF-TFTVEETVAFG--RYPFQTGLF-RQQTEKDEA---IVQEAMEQTGvadfAQKPIRELSGGEQQRVYLAQ 150
Cdd:PRK11288  334 PEdrKAEGIIpVHSVADNINISarRHHLRAGCLiNNRWEAENAdrfIRSLNIKTPS----REQLIMNLSGGNQQKAILGR 409

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 151 ALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTrESGLAAVSVFHDLNTASLYCDELMFMKNG-TAGPKQKPEyaVTEQ 229
Cdd:PRK11288  410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA-AQGVAVLFVSSDLPEVLGVADRIVVMREGrIAGELAREQ--ATER 486


                  ..
gi 1119636415 230 SI 231
Cdd:PRK11288  487 QA 488
PRK10535 PRK10535
macrolide ABC transporter ATP-binding protein/permease MacB;
9-197 1.55e-11

macrolide ABC transporter ATP-binding protein/permease MacB;


Pssm-ID: 182528 [Multi-domain]  Cd Length: 648  Bit Score: 66.29  E-value: 1.55e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   9 GYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQImavlpqkTDQAFT 88
Cdd:PRK10535   17 GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL-------RREHFG 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  89 FTveetvaFGRYPFQTGLFRQQ------------TEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQP 156
Cdd:PRK10535   90 FI------FQRYHLLSHLTAAQnvevpavyagleRKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG 163

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHD 197
Cdd:PRK10535  164 QVILADEPTGALDSHSGEEVMAILHQL-RDRGHTVIIVTHD 203
PRK13409 PRK13409
ribosome biogenesis/translation initiation ATPase RLI;
22-198 1.98e-11

ribosome biogenesis/translation initiation ATPase RLI;


Pssm-ID: 184037 [Multi-domain]  Cd Length: 590  Bit Score: 65.99  E-value: 1.98e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  22 TVEKGEFLGILGPNGSGKTTLLHL----------LTGTLPAKEgRV--YLAGKLLADYKpKELA--QIMAVL-PQKTDQ- 85
Cdd:PRK13409   95 IPKEGKVTGILGPNGIGKTTAVKIlsgelipnlgDYEEEPSWD-EVlkRFRGTELQNYF-KKLYngEIKVVHkPQYVDLi 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  86 --AFTFTVEEtvafgrypfqtgLFRQQTEKDeaIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:PRK13409  173 pkVFKGKVRE------------LLKKVDERG--KLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDE 238

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1119636415 164 PTNFLDLaYQK-DLLDLIKRLTRESglAAVSVFHDL 198
Cdd:PRK13409  239 PTSYLDI-RQRlNVARLIRELAEGK--YVLVVEHDL 271
PRK09700 PRK09700
D-allose ABC transporter ATP-binding protein AlsA;
1-215 2.21e-11

D-allose ABC transporter ATP-binding protein AlsA;


Pssm-ID: 182036 [Multi-domain]  Cd Length: 510  Bit Score: 65.58  E-value: 2.21e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI-MAVL 79
Cdd:PRK09700    6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLgIGII 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 PQKTDQAFTFTVEETVAFGRYPFQT--GLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPR 157
Cdd:PRK09700   86 YQELSVIDELTVLENLYIGRHLTKKvcGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAK 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 158 ILFLDEPTNFLDLAyQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:PRK09700  166 VIIMDEPTSSLTNK-EVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGS 222
bacteriocin_ABC TIGR01193
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ...
 9-202 2.44e-11

ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]


Pssm-ID: 130261 [Multi-domain]  Cd Length: 708  Bit Score: 65.92  E-value: 2.44e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   9 GYGdSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTdQAFT 88
Cdd:TIGR01193 484 GYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP-YIFS 561

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  89 FTVEETVAFGRYPfqtGLFRQQTEKDEAIVQ-----EAMEQTGVADFAQKPiRELSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:TIGR01193 562 GSILENLLLGAKE---NVSQDEIWAACEIAEikddiENMPLGYQTELSEEG-SSISGGQKQRIALARALLTDSKVLILDE 637

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1119636415 164 PTNFLDLAYQKDLLDLIKRLTRESglaAVSVFHDLNTAS 202
Cdd:TIGR01193 638 STSNLDTITEKKIVNNLLNLQDKT---IIFVAHRLSVAK 673
ABCD_peroxisomal_ALDP cd03223
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ...
 15-196 3.55e-11

ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).


Pssm-ID: 213190 [Multi-domain]  Cd Length: 166  Bit Score: 61.40  E-value: 3.55e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  15 LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYlagklladyKPkELAQIMaVLPQKTdqaftftveet 94
Cdd:cd03223    16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG---------MP-EGEDLL-FLPQRP----------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  95 vafgrYpFQTGLFRQQtekdeaIVqeameqtgvadfaqKP-IRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQ 173
Cdd:cd03223    74 -----Y-LPLGTLREQ------LI--------------YPwDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESE 127

                         170       180
                  ....*....|....*....|...
gi 1119636415 174 KDLLDLIKrltrESGLAAVSVFH 196
Cdd:cd03223   128 DRLYQLLK----ELGITVISVGH 146
araG PRK11288
L-arabinose ABC transporter ATP-binding protein AraG;
5-214 4.16e-11

L-arabinose ABC transporter ATP-binding protein AraG;


Pssm-ID: 183077 [Multi-domain]  Cd Length: 501  Bit Score: 64.55  E-value: 4.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   5 GLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE-LAQIMAVLPQKT 83
Cdd:PRK11288    9 GIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAaLAAGVAIIYQEL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  84 DQAFTFTVEETVAFGRYPFQTGLFRQQTEKDEAivQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:PRK11288   89 HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEA--REQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDE 166

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1119636415 164 PTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK11288  167 PTSSLSAREIEQLFRVIREL-RAEGRVILYVSHRMEEIFALCDAITVFKDG 216
ABC2_perm_RbbA NF033858
ribosome-associated ATPase/putative transporter RbbA;
3-211 5.16e-11

ribosome-associated ATPase/putative transporter RbbA;


Pssm-ID: 468210 [Multi-domain]  Cd Length: 907  Bit Score: 64.76  E-value: 5.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLAdykPKELAQ-----IMA 77
Cdd:NF033858  269 ARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVD---AGDIATrrrvgYMS 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  78 vlpqktdQAFTFTVEETV-------AfgRypfqtgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQ 150
Cdd:NF033858  346 -------QAFSLYGELTVrqnlelhA--R------LFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAV 410

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 151 ALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGlaaVSVF---HDLNTAsLYCDELMFM 211
Cdd:NF033858  411 AVIHKPELLILDEPTSGVDPVARDMFWRLLIELSREDG---VTIFistHFMNEA-ERCDRISLM 470
Rli1 COG1245
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ...
 22-198 5.31e-11

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440858 [Multi-domain]  Cd Length: 592  Bit Score: 64.42  E-value: 5.31e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  22 TVEKGEFLGILGPNGSGKTTLLHL----------LTGTLPAKEgRV--YLAGKLLADYKpKELA--QIMAVL-PQKTDQ- 85
Cdd:COG1245    95 VPKKGKVTGILGPNGIGKSTALKIlsgelkpnlgDYDEEPSWD-EVlkRFRGTELQDYF-KKLAngEIKVAHkPQYVDLi 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  86 --AFTFTVEEtvafgrypfqtgLFRQQTEKDeaIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:COG1245   173 pkVFKGTVRE------------LLEKVDERG--KLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDE 238

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1119636415 164 PTNFLDLaYQK-DLLDLIKRLTREsGLAAVSVFHDL 198
Cdd:COG1245   239 PSSYLDI-YQRlNVARLIRELAEE-GKYVLVVEHDL 272
PRK11147 PRK11147
ABC transporter ATPase component; Reviewed
 6-169 9.92e-11

ABC transporter ATPase component; Reviewed


Pssm-ID: 236861 [Multi-domain]  Cd Length: 635  Bit Score: 63.82  E-value: 9.92e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   6 LSGGY---GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLladykpkelaqIMAVLPQK 82
Cdd:PRK11147    6 IHGAWlsfSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVARLQQD 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 TDQAFTFTVEETVAFG---------RY----------PFQTGLFRQQTEKD----------EAIVQEAMEQTGVAdfAQK 133
Cdd:PRK11147   75 PPRNVEGTVYDFVAEGieeqaeylkRYhdishlvetdPSEKNLNELAKLQEqldhhnlwqlENRINEVLAQLGLD--PDA 152

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1119636415 134 PIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLD 169
Cdd:PRK11147  153 ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
ABCC_SUR1_N cd03290
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ...
 16-215 1.53e-10

ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.


Pssm-ID: 213257 [Multi-domain]  Cd Length: 218  Bit Score: 60.81  E-value: 1.53e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI----MAVLPQKTdQAFTFTV 91
Cdd:cd03290    17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRnrysVAYAAQKP-WLLNATV 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  92 EETVAFGRyPFQTGLFRQQTekDEAIVQEAMEQTGVADfaQKPIRE----LSGGEQQRVYLAQALAQQPRILFLDEPTNF 167
Cdd:cd03290    96 EENITFGS-PFNKQRYKAVT--DACSLQPDIDLLPFGD--QTEIGErginLSGGQRQRICVARALYQNTNIVFLDDPFSA 170

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1119636415 168 LDLAYQKDLLDL-IKRLTRESGLAAVSVFHDLNTASlYCDELMFMKNGT 215
Cdd:cd03290   171 LDIHLSDHLMQEgILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218
TagH COG1134
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ...
 17-215 1.60e-10

ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];


Pssm-ID: 440749 [Multi-domain]  Cd Length: 245  Bit Score: 61.25  E-value: 1.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  17 NNVSLTVEKGEFLGILGPNGSGKttllhlltgtlPAKEGRVYLAGK---LLadykpkELAqiMAVLPQktdqaftFTVEE 93
Cdd:COG1134    43 KDVSFEVERGESVGIIGRNGAGKstllkliagilEPTSGRVEVNGRvsaLL------ELG--AGFHPE-------LTGRE 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  94 TVAF-GRYpfqTGLFRQQTekdEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAY 172
Cdd:COG1134   108 NIYLnGRL---LGLSRKEI---DEKFDEIVEFAELGDFIDQPVKTYSSGMRARLAFAVATAVDPDILLVDEVLAVGDAAF 181

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1119636415 173 QKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:COG1134   182 QKKCLARIREL-RESGRTVIFVSHSMGAVRRLCDRAIWLEKGR 223
rim_protein TIGR01257
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ...
 16-214 1.73e-10

retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]


Pssm-ID: 130324 [Multi-domain]  Cd Length: 2272  Bit Score: 63.49  E-value: 1.73e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLaDYKPKELAQIMAVLPQKTDQAFTFTVEETV 95
Cdd:TIGR01257  946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGMCPQHNILFHHLTVAEHI 1024

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   96 AFgrypfqTGLFRQQTEKDEAIVQEAM-EQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQK 174
Cdd:TIGR01257 1025 LF------YAQLKGRSWEEAQLEMEAMlEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRR 1098

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 1119636415  175 DLLDLIkrLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:TIGR01257 1099 SIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQG 1136
PRK14271 PRK14271
phosphate ABC transporter ATP-binding protein; Provisional
 1-234 2.05e-10

phosphate ABC transporter ATP-binding protein; Provisional


Pssm-ID: 172759 [Multi-domain]  Cd Length: 276  Bit Score: 61.27  E-value: 2.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVY-----LAGKLLADYKPK-ELAQ 74
Cdd:PRK14271   22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYsgdvlLGGRSIFNYRDVlEFRR 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  75 IMAVLPQKTDqAFTFTVEETVAFGRYPFQTgLFRQQTEkdeAIVQEAMEQTGVAD-----FAQKPIReLSGGEQQRVYLA 149
Cdd:PRK14271  102 RVGMLFQRPN-PFPMSIMDNVLAGVRAHKL-VPRKEFR---GVAQARLTEVGLWDavkdrLSDSPFR-LSGGQQQLLCLA 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 150 QALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTREsgLAAVSVFHDLNTASLYCDELMFMKNG---TAGPKQK----P 222
Cdd:PRK14271  176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGrlvEEGPTEQlfssP 253

                         250
                  ....*....|..
gi 1119636415 223 EYAVTEQSIKAV 234
Cdd:PRK14271  254 KHAETARYVAGL 265
PRK10636 PRK10636
putative ABC transporter ATP-binding protein; Provisional
 1-218 2.95e-10

putative ABC transporter ATP-binding protein; Provisional


Pssm-ID: 236729 [Multi-domain]  Cd Length: 638  Bit Score: 62.11  E-value: 2.95e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGK-------------LLADY 67
Cdd:PRK10636  313 LKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGiklgyfaqhqlefLRADE 392

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  68 KPkeLAQIMAVLPQKTDQAFTFTVeetvafGRYPFQtglfrqqtekdeaivqeameqtgvADFAQKPIRELSGGEQQRVY 147
Cdd:PRK10636  393 SP--LQHLARLAPQELEQKLRDYL------GGFGFQ------------------------GDKVTEETRRFSGGEKARLV 440

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119636415 148 LAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIkrLTRESGLAAVSvfHDLNTASLYCDELMFMKNGTAGP 218
Cdd:PRK10636  441 LALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFEGALVVVS--HDRHLLRSTTDDLYLVHDGKVEP 507
PRK11819 PRK11819
putative ABC transporter ATP-binding protein; Reviewed
 3-169 3.92e-10

putative ABC transporter ATP-binding protein; Reviewed


Pssm-ID: 236992 [Multi-domain]  Cd Length: 556  Bit Score: 61.67  E-value: 3.92e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLhlltgtlpakegrvylagKLLADykpkelaqimavlpQK 82
Cdd:PRK11819  327 AENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLF------------------KMITG--------------QE 374

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 TDQAFTFTVEETVAFGrYPFQtglFRQQTEKDEAIVQEAME-----QTG---------VADFA------QKPIRELSGGE 142
Cdd:PRK11819  375 QPDSGTIKIGETVKLA-YVDQ---SRDALDPNKTVWEEISGgldiiKVGnreipsrayVGRFNfkggdqQKKVGVLSGGE 450

                         170       180
                  ....*....|....*....|....*..
gi 1119636415 143 QQRVYLAQALAQQPRILFLDEPTNFLD 169
Cdd:PRK11819  451 RNRLHLAKTLKQGGNVLLLDEPTNDLD 477
PRK11147 PRK11147
ABC transporter ATPase component; Reviewed
 3-169 4.37e-10

ABC transporter ATPase component; Reviewed


Pssm-ID: 236861 [Multi-domain]  Cd Length: 635  Bit Score: 61.89  E-value: 4.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   3 AEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYkpkeLAQIMAVL-PQ 81
Cdd:PRK11147  322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAY----FDQHRAELdPE 397

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KtdqaftfTVEETVAFGRypfqtglfrqqtekdeaivQEAMeQTGVA--------DF------AQKPIRELSGGEQQRVY 147
Cdd:PRK11147  398 K-------TVMDNLAEGK-------------------QEVM-VNGRPrhvlgylqDFlfhpkrAMTPVKALSGGERNRLL 450

                         170       180
                  ....*....|....*....|..
gi 1119636415 148 LAQALAQQPRILFLDEPTNFLD 169
Cdd:PRK11147  451 LARLFLKPSNLLILDEPTNDLD 472
PRK10908 PRK10908
cell division ATP-binding protein FtsE;
1-198 5.64e-10

cell division ATP-binding protein FtsE;


Pssm-ID: 182829 [Multi-domain]  Cd Length: 222  Bit Score: 59.12  E-value: 5.64e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGY-GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE---LAQIM 76
Cdd:PRK10908    2 IRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREvpfLRRQI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  77 AVLPQKTDQAFTFTVEETVAFgryPFQTGlfRQQTEKDEAIVQEAMEQTGVADFAQK-PIrELSGGEQQRVYLAQALAQQ 155
Cdd:PRK10908   82 GMIFQDHHLLMDRTVYDNVAI---PLIIA--GASGDDIRRRVSAALDKVGLLDKAKNfPI-QLSGGEQQRVGIARAVVNK 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1119636415 156 PRILFLDEPTNFLDLAYQKDLLDLIKRLTReSGLAAVSVFHDL 198
Cdd:PRK10908  156 PAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDI 197
ugpC PRK11650
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
11-216 6.20e-10

sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;


Pssm-ID: 236947 [Multi-domain]  Cd Length: 356  Bit Score: 60.63  E-value: 6.20e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKElaqimavlpqkTDQAFTF- 89
Cdd:PRK11650   15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAD-----------RDIAMVFq 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  90 --------TVEETVAFGrypfqtgLFRQQTEKDE--AIVQEAMEQTGVADFAQ-KPiRELSGGEQQRVYLAQALAQQPRI 158
Cdd:PRK11650   84 nyalyphmSVRENMAYG-------LKIRGMPKAEieERVAEAARILELEPLLDrKP-RELSGGQRQRVAMGRAIVREPAV 155

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 159 LFLDEPTNFLD--LAYQKDLldLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNGTA 216
Cdd:PRK11650  156 FLFDEPLSNLDakLRVQMRL--EIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVA 213
PRK10938 PRK10938
putative molybdenum transport ATP-binding protein ModF; Provisional
 12-198 7.00e-10

putative molybdenum transport ATP-binding protein ModF; Provisional


Pssm-ID: 182852 [Multi-domain]  Cd Length: 490  Bit Score: 60.80  E-value: 7.00e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  12 DSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAFTFTV 91
Cdd:PRK10938   15 DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPG 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  92 EETvaFGRYPFQTglfRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLA 171
Cdd:PRK10938   95 EDD--TGRTTAEI---IQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVA 169

                         170       180       190
                  ....*....|....*....|....*....|
gi 1119636415 172 YQKDLLDLIKRLTREsGLAAVSV---FHDL 198
Cdd:PRK10938  170 SRQQLAELLASLHQS-GITLVLVlnrFDEI 198
rim_protein TIGR01257
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ...
 13-291 8.42e-10

retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]


Pssm-ID: 130324 [Multi-domain]  Cd Length: 2272  Bit Score: 61.18  E-value: 8.42e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   13 SRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADyKPKELAQIMAVLPQktdqaftFTVE 92
Cdd:TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQ-------FDAI 2023

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   93 ETVAFGR-----YPFQTGLFRQQTEKdeaIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNF 167
Cdd:TIGR01257 2024 DDLLTGRehlylYARLRGVPAEEIEK---VANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTG 2100

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  168 LDLAYQKDLLDLIKRLTREsGLAAVSVFHDLNTASLYCDELMFMKNGTAgpkqkpEYAVTEQSIKAVYDTDVTALVHQSS 247
Cdd:TIGR01257 2101 MDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAF------QCLGTIQHLKSKFGDGYIVTMKIKS 2173

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*.
gi 1119636415  248 PKPMIViqPEKDSVKQ--QSiPFEALLQAGRDDILLQTEIPLRTLS 291
Cdd:TIGR01257 2174 PKDDLL--PDLNPVEQffQG-NFPGSVQRERHYNMLQFQVSSSSLA 2216
PRK11176 PRK11176
lipid A ABC transporter ATP-binding protein/permease MsbA;
16-184 1.08e-09

lipid A ABC transporter ATP-binding protein/permease MsbA;


Pssm-ID: 183016 [Multi-domain]  Cd Length: 582  Bit Score: 60.42  E-value: 1.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTdQAFTFTVEETV 95
Cdd:PRK11176  359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNV-HLFNDTIANNI 437

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  96 AFGRYPFQTglfRQQTEKdEAIVQEAMeqtgvaDFAQK-------PIRE----LSGGEQQRVYLAQALAQQPRILFLDEP 164
Cdd:PRK11176  438 AYARTEQYS---REQIEE-AARMAYAM------DFINKmdngldtVIGEngvlLSGGQRQRIAIARALLRDSPILILDEA 507

                         170       180
                  ....*....|....*....|....
gi 1119636415 165 TNFLD----LAYQKDLLDLIKRLT 184
Cdd:PRK11176  508 TSALDteseRAIQAALDELQKNRT 531
PLN03232 PLN03232
ABC transporter C family member; Provisional
 15-248 1.48e-09

ABC transporter C family member; Provisional


Pssm-ID: 215640 [Multi-domain]  Cd Length: 1495  Bit Score: 60.37  E-value: 1.48e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   15 LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKtdqafTFTVEET 94
Cdd:PLN03232  1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQS-----PVLFSGT 1325

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   95 VAFGRYPFqtglfrqqTEKDEAIVQEAMEQTGVAD-FAQKPI----------RELSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:PLN03232  1326 VRFNIDPF--------SEHNDADLWEALERAHIKDvIDRNPFgldaevseggENFSVGQRQLLSLARALLRRSKILVLDE 1397

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  164 PTNFLDLAYQKdlldLIKRLTRES--GLAAVSVFHDLNTAsLYCDELMFMKNGTAGPKQKPEYAVTEQSikavydTDVTA 241
Cdd:PLN03232  1398 ATASVDVRTDS----LIQRTIREEfkSCTMLVIAHRLNTI-IDCDKILVLSSGQVLEYDSPQELLSRDT------SAFFR 1466


                   ....*..
gi 1119636415  242 LVHQSSP 248
Cdd:PLN03232  1467 MVHSTGP 1473
SufC COG0396
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ...
 11-164 1.49e-09

Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440165 [Multi-domain]  Cd Length: 245  Bit Score: 58.15  E-value: 1.49e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLlhlltgtlpAK-----------EGRVYLAGKLLADYKPKELAQ--IMa 77
Cdd:COG0396    11 EGKEILKGVNLTIKPGEVHAIMGPNGSGKSTL---------AKvlmghpkyevtSGSILLDGEDILELSPDERARagIF- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  78 vlpqktdqaftftveetVAFgRYP-----------FQTGLFRQQTEKDEAI-----VQEAMEQTGV-ADFAQKPIRE-LS 139
Cdd:COG0396    81 -----------------LAF-QYPveipgvsvsnfLRTALNARRGEELSAReflklLKEKMKELGLdEDFLDRYVNEgFS 142

                         170       180
                  ....*....|....*....|....*
gi 1119636415 140 GGEQQRVYLAQALAQQPRILFLDEP 164
Cdd:COG0396   143 GGEKKRNEILQMLLLEPKLAILDET 167
PRK11174 PRK11174
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
 12-169 1.59e-09

cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed


Pssm-ID: 236870 [Multi-domain]  Cd Length: 588  Bit Score: 59.86  E-value: 1.59e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  12 DSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAkEGRVYLAGKLLADYKPKELAQIMAVLPQKTdQAFTFTV 91
Cdd:PRK11174  362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGIELRELDPESWRKHLSWVGQNP-QLPHGTL 439

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  92 EETVAFGRypfqtglfrqqTEKDEAIVQEAMEQTGVADFAQK-------PIRE----LSGGEQQRVYLAQALAQQPRILF 160
Cdd:PRK11174  440 RDNVLLGN-----------PDASDEQLQQALENAWVSEFLPLlpqgldtPIGDqaagLSVGQAQRLALARALLQPCQLLL 508


                  ....*....
gi 1119636415 161 LDEPTNFLD 169
Cdd:PRK11174  509 LDEPTASLD 517
ABCC_MRP_domain1 cd03250
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ...
 7-164 2.28e-09

ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.


Pssm-ID: 213217 [Multi-domain]  Cd Length: 204  Bit Score: 57.09  E-value: 2.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   7 SGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKlladykpkelaqiMAVLPQktdQA 86
Cdd:cd03250    12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS-------------IAYVSQ---EP 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  87 FTF--TVEETVAFGrYPFqtglfrqqtekDEAIVQEAMEQTG-VADFAQKP------IRE----LSGGEQQRVYLAQALA 153
Cdd:cd03250    76 WIQngTIRENILFG-KPF-----------DEERYEKVIKACAlEPDLEILPdgdlteIGEkginLSGGQKQRISLARAVY 143

                         170
                  ....*....|.
gi 1119636415 154 QQPRILFLDEP 164
Cdd:cd03250   144 SDADIYLLDDP 154
40850658_otr NF000106
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
1-186 2.46e-09

oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;


Pssm-ID: 411078 [Multi-domain]  Cd Length: 351  Bit Score: 58.59  E-value: 2.46e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKElAQIMAVLP 80
Cdd:NF000106   14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*GPDAGRRPWRF*TWCANRRALR-RTIG*HRP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTFTVEETVafgrypFQTGLFRQQTEKD-EAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRIL 159
Cdd:NF000106   93 VR*GRRESFSGRENL------YMIGR*LDLSRKDaRARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVL 166

                         170       180
                  ....*....|....*....|....*..
gi 1119636415 160 FLDEPTNFLDLAYQKDLLDLIKRLTRE 186
Cdd:NF000106  167 YLDEPTTGLDPRTRNEVWDEVRSMVRD 193
PLN03211 PLN03211
ABC transporter G-25; Provisional
 15-169 3.09e-09

ABC transporter G-25; Provisional


Pssm-ID: 215634 [Multi-domain]  Cd Length: 659  Bit Score: 59.12  E-value: 3.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  15 LINNVSLTVEKGEFLGILGPNGSGKTTLLHlltgtlpAKEGRVY---LAGKLLA-DYKP-KELAQIMAVLPQKTDQAFTF 89
Cdd:PLN03211   83 ILNGVTGMASPGEILAVLGPSGSGKSTLLN-------ALAGRIQgnnFTGTILAnNRKPtKQILKRTGFVTQDDILYPHL 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  90 TVEETVAFG---RYPfqTGLFRQ-QTEKDEAIVQE-AMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEP 164
Cdd:PLN03211  156 TVRETLVFCsllRLP--KSLTKQeKILVAESVISElGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233


                  ....*
gi 1119636415 165 TNFLD 169
Cdd:PLN03211  234 TSGLD 238
ABCG_PDR_domain2 cd03232
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ...
 11-214 3.39e-09

Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213199 [Multi-domain]  Cd Length: 192  Bit Score: 56.10  E-value: 3.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTlpaKEGRVyLAGKLLADYKPKelaqimavlpqktdqaftft 90
Cdd:cd03232    18 GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR---KTAGV-ITGEILINGRPL-------------------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  91 veeTVAFGRYpfqTGLFRQQ-TEKDEAIVQEAMEqtgvadFAQKpIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLD 169
Cdd:cd03232    74 ---DKNFQRS---TGYVEQQdVHSPNLTVREALR------FSAL-LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLD 140

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1119636415 170 LAYQKDLLDLIKRLTrESGLAAVSVFHDLNTASL-YCDELMFMKNG 214
Cdd:cd03232   141 SQAAYNIVRFLKKLA-DSGQAILCTIHQPSASIFeKFDRLLLLKRG 185
PRK10790 PRK10790
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
4-169 3.99e-09

SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;


Pssm-ID: 182733 [Multi-domain]  Cd Length: 592  Bit Score: 58.58  E-value: 3.99e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLI-NNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLpQK 82
Cdd:PRK10790  344 DNVSFAYRDDNLVlQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV-QQ 422

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  83 TDQAFTFTVEETVAFGRypfqtglfrqqtEKDEAIVQEAMEQTGVADFAQK-------PIRE----LSGGEQQRVYLAQA 151
Cdd:PRK10790  423 DPVVLADTFLANVTLGR------------DISEEQVWQALETVQLAELARSlpdglytPLGEqgnnLSVGQKQLLALARV 490

                         170
                  ....*....|....*...
gi 1119636415 152 LAQQPRILFLDEPTNFLD 169
Cdd:PRK10790  491 LVQTPQILILDEATANID 508
ABC_RNaseL_inhibitor cd03222
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ...
 1-220 8.63e-09

ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.


Pssm-ID: 213189 [Multi-domain]  Cd Length: 177  Bit Score: 54.89  E-value: 8.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLinNVSL-TVEKGEFLGILGPNGSGKTTLLHLltgtlpakegrvyLAGKLLADYKPKELAQI-MAV 78
Cdd:cd03222     1 QLYPDCVKRYGVFFL--LVELgVVKEGEVIGIVGPNGTGKTTAVKI-------------LAGQLIPNGDNDEWDGItPVY 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 LPQKTDqaftftveetvafgrypfqtglfrqqtekdeaivqeameqtgvadfaqkpireLSGGEQQRVYLAQALAQQPRI 158
Cdd:cd03222    66 KPQYID-----------------------------------------------------LSGGELQRVAIAAALLRNATF 92

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 159 LFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFM-----KNGTAGPKQ 220
Cdd:cd03222    93 YLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFegepgVYGIASQPK 159
PRK10261 PRK10261
glutathione transporter ATP-binding protein; Provisional
 16-198 8.73e-09

glutathione transporter ATP-binding protein; Provisional


Pssm-ID: 182342 [Multi-domain]  Cd Length: 623  Bit Score: 57.56  E-value: 8.73e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGK---LLADYKPKELAQIMAVLPQktDQAFTFTVE 92
Cdd:PRK10261  340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQridTLSPGKLQALRRDIQFIFQ--DPYASLDPR 417

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  93 ETVAFG-RYPFQT-GLFrqQTEKDEAIVQEAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLD 169
Cdd:PRK10261  418 QTVGDSiMEPLRVhGLL--PGKAAAARVAWLLERVGLlPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495

                         170       180
                  ....*....|....*....|....*....
gi 1119636415 170 LAYQKDLLDLIKRLTRESGLAAVSVFHDL 198
Cdd:PRK10261  496 VSIRGQIINLLLDLQRDFGIAYLFISHDM 524
PRK10982 PRK10982
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
 16-214 9.52e-09

galactose/methyl galaxtoside transporter ATP-binding protein; Provisional


Pssm-ID: 182880 [Multi-domain]  Cd Length: 491  Bit Score: 57.43  E-value: 9.52e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQimavlpqktdQAFTFTVEETV 95
Cdd:PRK10982  264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAIN----------HGFALVTEERR 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  96 AFGRYPF-----------------QTGLFR-QQTEKDEAIVQEAMEqtgVADFAQK-PIRELSGGEQQRVYLAQALAQQP 156
Cdd:PRK10982  334 STGIYAYldigfnslisnirnyknKVGLLDnSRMKSDTQWVIDSMR---VKTPGHRtQIGSLSGGNQQKVIIGRWLLTQP 410

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLTRES-GLAAVSvfHDLNTASLYCDELMFMKNG 214
Cdd:PRK10982  411 EILMLDEPTRGIDVGAKFEIYQLIAELAKKDkGIIIIS--SEMPELLGITDRILVMSNG 467
ABC_ABC_ChvD TIGR03719
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ...
 5-169 1.04e-08

ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.


Pssm-ID: 274744 [Multi-domain]  Cd Length: 552  Bit Score: 57.25  E-value: 1.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   5 GLSGGYGDSRLI-NNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE------------ 71
Cdd:TIGR03719   9 RVSKVVPPKKEIlKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQPGIKVGYLPQEpqldptktvren 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  72 ----LAQIMAVLpQKTDQAFTFTVEETVAFgrypfqTGLFRQQTEkdeaiVQEAMEQTGVADFAQK-------------- 133
Cdd:TIGR03719  89 veegVAEIKDAL-DRFNEISAKYAEPDADF------DKLAAEQAE-----LQEIIDAADAWDLDSQleiamdalrcppwd 156

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1119636415 134 -PIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLD 169
Cdd:TIGR03719 157 aDVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD 193
PRK15112 PRK15112
peptide ABC transporter ATP-binding protein SapF;
16-241 1.31e-08

peptide ABC transporter ATP-binding protein SapF;


Pssm-ID: 185067 [Multi-domain]  Cd Length: 267  Bit Score: 55.57  E-value: 1.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLA----DYKPKELAQIM-----AVLP-QKTDQ 85
Cdd:PRK15112   29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfgdySYRSQRIRMIFqdpstSLNPrQRISQ 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  86 AFTFtveetvafgryPFQTGLFRQQTEKDEAIVQeAMEQTGV-ADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEP 164
Cdd:PRK15112  109 ILDF-----------PLRLNTDLEPEQREKQIIE-TLRQVGLlPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEA 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 165 TNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG-------TAGPKQKPEYAVTEQSIKAVYDT 237
Cdd:PRK15112  177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGevvergsTADVLASPLHELTKRLIAGHFGE 256


                  ....
gi 1119636415 238 DVTA 241
Cdd:PRK15112  257 ALTA 260
CFTR_protein TIGR01271
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ...
 15-214 1.44e-08

cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]


Pssm-ID: 273530 [Multi-domain]  Cd Length: 1490  Bit Score: 57.23  E-value: 1.44e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   15 LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLlaDYKPkelaQIMAVLPQktdqaftfTVEET 94
Cdd:TIGR01271  441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRI--SFSP----QTSWIMPG--------TIKDN 506

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   95 VAFG----RYPFQTGLFRQQTEKDEAIVQE----AMEQTGVAdfaqkpireLSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:TIGR01271  507 IIFGlsydEYRYTSVIKACQLEEDIALFPEkdktVLGEGGIT---------LSGGQRARISLARAVYKDADLYLLDSPFT 577

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1119636415  167 FLDLAYQKDLLD--LIKRLTRESGLAAVSVFHDLNTAslycDELMFMKNG 214
Cdd:TIGR01271  578 HLDVVTEKEIFEscLCKLMSNKTRILVTSKLEHLKKA----DKILLLHEG 623
PTZ00265 PTZ00265
multidrug resistance protein (mdr1); Provisional
 55-174 3.44e-08

multidrug resistance protein (mdr1); Provisional


Pssm-ID: 240339 [Multi-domain]  Cd Length: 1466  Bit Score: 56.19  E-value: 3.44e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   55 GRVYLAGKLLADYKPKELAQIMAVLPQKTdQAFTFTVEETVAFGRypfqtglfRQQTEKDE------AIVQEAMEQ---- 124
Cdd:PTZ00265  1277 GKILLDGVDICDYNLKDLRNLFSIVSQEP-MLFNMSIYENIKFGK--------EDATREDVkrackfAAIDEFIESlpnk 1347

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1119636415  125 --TGVADFAqkpiRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQK 174
Cdd:PTZ00265  1348 ydTNVGPYG----KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEK 1395
3a01203 TIGR00954
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ...
 15-196 3.49e-08

Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273360 [Multi-domain]  Cd Length: 659  Bit Score: 55.91  E-value: 3.49e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  15 LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVylagklladYKPKElaQIMAVLPQKTdqAFTF-TVEE 93
Cdd:TIGR00954 467 LIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRL---------TKPAK--GKLFYVPQRP--YMTLgTLRD 533

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  94 TVAfgrYP------FQTGLFRQQTEKD------EAIVQEAMEQTGVADFAQkpirELSGGEQQRVYLAQALAQQPRILFL 161
Cdd:TIGR00954 534 QII---YPdssedmKRRGLSDKDLEQIldnvqlTHILEREGGWSAVQDWMD----VLSGGEKQRIAMARLFYHKPQFAIL 606

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1119636415 162 DEPTNfldlAYQKDLLDLIKRLTRESGLAAVSVFH 196
Cdd:TIGR00954 607 DECTS----AVSVDVEGYMYRLCREFGITLFSVSH 637
modC PRK11144
molybdenum ABC transporter ATP-binding protein ModC;
138-214 4.20e-08

molybdenum ABC transporter ATP-binding protein ModC;


Pssm-ID: 182993 [Multi-domain]  Cd Length: 352  Bit Score: 54.88  E-value: 4.20e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 138 LSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK11144  129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQG 205
GguA NF040905
sugar ABC transporter ATP-binding protein;
17-199 5.62e-08

sugar ABC transporter ATP-binding protein;


Pssm-ID: 468840 [Multi-domain]  Cd Length: 500  Bit Score: 54.80  E-value: 5.62e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  17 NNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAK--EGRVYLAGKLLA--DYKPKELAQI------MAVLPQktdqa 86
Cdd:NF040905   18 DDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGsyEGEILFDGEVCRfkDIRDSEALGIviihqeLALIPY----- 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  87 ftFTVEETVAFGRYPFQTGLF-RQQTEKDEAivqEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPT 165
Cdd:NF040905   93 --LSIAENIFLGNERAKRGVIdWNETNRRAR---ELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKDVKLLILDEPT 167

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1119636415 166 NFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLN 199
Cdd:NF040905  168 AALNEEDSAALLDLLLEL-KAQGITSIIISHKLN 200
PRK13657 PRK13657
glucan ABC transporter ATP-binding protein/ permease;
11-171 6.39e-08

glucan ABC transporter ATP-binding protein/ permease;


Pssm-ID: 184214 [Multi-domain]  Cd Length: 588  Bit Score: 54.97  E-value: 6.39e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  11 GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQktdQAFTF- 89
Cdd:PRK13657  346 NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQ---DAGLFn 422

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  90 -TVEETVAFGRypfqtglfrqqTEKDEAIVQEAMEQTGVADF-AQKPI----------RELSGGEQQRVYLAQALAQQPR 157
Cdd:PRK13657  423 rSIEDNIRVGR-----------PDATDEEMRAAAERAQAHDFiERKPDgydtvvgergRQLSGGERQRLAIARALLKDPP 491

                         170
                  ....*....|....
gi 1119636415 158 ILFLDEPTNFLDLA 171
Cdd:PRK13657  492 ILILDEATSALDVE 505
ABC2_perm_RbbA NF033858
ribosome-associated ATPase/putative transporter RbbA;
4-165 7.55e-08

ribosome-associated ATPase/putative transporter RbbA;


Pssm-ID: 468210 [Multi-domain]  Cd Length: 907  Bit Score: 54.75  E-value: 7.55e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   4 EGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKElaqimAVLPQKt 83
Cdd:NF033858    5 EGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMADARHRR-----AVCPRI- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  84 dqAF-----------TFTVEETVAF-GRypfqtgLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQA 151
Cdd:NF033858   79 --AYmpqglgknlypTLSVFENLDFfGR------LFGQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCA 150

                         170
                  ....*....|....
gi 1119636415 152 LAQQPRILFLDEPT 165
Cdd:NF033858  151 LIHDPDLLILDEPT 164
MRP_assoc_pro TIGR00957
multi drug resistance-associated protein (MRP); This model describes multi drug ...
 15-200 8.05e-08

multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]


Pssm-ID: 188098 [Multi-domain]  Cd Length: 1522  Bit Score: 54.95  E-value: 8.05e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   15 LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQktdqaftftveET 94
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ-----------DP 1369

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   95 VAF-GRYPFQTGLFRQQTEKDeaiVQEAMEQTGVADF-AQKPIR----------ELSGGEQQRVYLAQALAQQPRILFLD 162
Cdd:TIGR00957 1370 VLFsGSLRMNLDPFSQYSDEE---VWWALELAHLKTFvSALPDKldhecaeggeNLSVGQRQLVCLARALLRKTKILVLD 1446

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 1119636415  163 EPTNFLDLayQKDllDLIKRLTRES--GLAAVSVFHDLNT 200
Cdd:TIGR00957 1447 EATAAVDL--ETD--NLIQSTIRTQfeDCTVLTIAHRLNT 1482
ABCC_CFTR1 cd03291
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ...
 15-178 8.55e-08

ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.


Pssm-ID: 213258 [Multi-domain]  Cd Length: 282  Bit Score: 53.32  E-value: 8.55e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  15 LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLlaDYKPkelaQIMAVLPQktdqaftfTVEET 94
Cdd:cd03291    52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRI--SFSS----QFSWIMPG--------TIKEN 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  95 VAFG----RYPFQTGLFRQQTEKDeaivqeameqtgVADFAQK---PIRE----LSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:cd03291   118 IIFGvsydEYRYKSVVKACQLEED------------ITKFPEKdntVLGEggitLSGGQRARISLARAVYKDADLYLLDS 185

                         170
                  ....*....|....*
gi 1119636415 164 PTNFLDLAYQKDLLD 178
Cdd:cd03291   186 PFGYLDVFTEKEIFE 200
PRK10982 PRK10982
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
 16-266 9.51e-08

galactose/methyl galaxtoside transporter ATP-binding protein; Provisional


Pssm-ID: 182880 [Multi-domain]  Cd Length: 491  Bit Score: 53.97  E-value: 9.51e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE-LAQIMAVLPQKTDQAFTFTVEET 94
Cdd:PRK10982   14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEaLENGISMVHQELNLVLQRSVMDN 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  95 VAFGRYPFQtGLFrqqtekdeaIVQEAMEQTGVADFAQKPIR--------ELSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:PRK10982   94 MWLGRYPTK-GMF---------VDQDKMYRDTKAIFDELDIDidprakvaTLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 167 FLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNGTAGPKQKPEYAVTEQSIKAVYDTDVTALV--H 244
Cdd:PRK10982  164 SLTEKEVNHLFTIIRKL-KERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMMVGRSLTQRFpdK 242

                         250       260
                  ....*....|....*....|..
gi 1119636415 245 QSSPKPMIVIQPEKDSVKQQSI 266
Cdd:PRK10982  243 ENKPGEVILEVRNLTSLRQPSI 264
PRK11819 PRK11819
putative ABC transporter ATP-binding protein; Reviewed
 134-169 1.19e-07

putative ABC transporter ATP-binding protein; Reviewed


Pssm-ID: 236992 [Multi-domain]  Cd Length: 556  Bit Score: 53.97  E-value: 1.19e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1119636415 134 PIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLD 169
Cdd:PRK11819  160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
MK0520 COG2401
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ...
 1-196 1.27e-07

ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];


Pssm-ID: 441957 [Multi-domain]  Cd Length: 222  Bit Score: 52.27  E-value: 1.27e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLlhlltgtlpakegrvylaGKLLADYKPKELAQIMAVLP 80
Cdd:COG2401    31 LEAFGVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTL------------------LRLLAGALKGTPVAGCVDVP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKtdqafTFTVEETV--AFGRypfqtglfrqQTEKDEAIvqEAMEQTGVAD--FAQKPIRELSGGEQQRVYLAQALAQQP 156
Cdd:COG2401    93 DN-----QFGREASLidAIGR----------KGDFKDAV--ELLNAVGLSDavLWLRRFKELSTGQKFRFRLALLLAERP 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1119636415 157 RILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFH 196
Cdd:COG2401   156 KLLVIDEFCSHLDRQTAKRVARNLQKLARRAGITLVVATH 195
ABCG_PDR_domain1 cd03233
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ...
 15-192 2.92e-07

First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213200 [Multi-domain]  Cd Length: 202  Bit Score: 50.72  E-value: 2.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  15 LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAK---EGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAfTFTV 91
Cdd:cd03233    22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFP-TLTV 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  92 EETVafgrypfqtglfrqqtekdeaivqeameqtgvaDFAQKP-----IRELSGGEQQRVYLAQALAQQPRILFLDEPTN 166
Cdd:cd03233   101 RETL---------------------------------DFALRCkgnefVRGISGGERKRVSIAEALVSRASVLCWDNSTR 147

                         170       180
                  ....*....|....*....|....*.
gi 1119636415 167 FLDLAYQKDLLDLIKRLTRESGLAAV 192
Cdd:cd03233   148 GLDSSTALEILKCIRTMADVLKTTTF 173
ABC_UvrA cd03238
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ...
 138-220 4.82e-07

ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.


Pssm-ID: 213205 [Multi-domain]  Cd Length: 176  Bit Score: 49.63  E-value: 4.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 138 LSGGEQQRVYLAQALAQQP-RILF-LDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASlYCDELMFMkngt 215
Cdd:cd03238    88 LSGGELQRVKLASELFSEPpGTLFiLDEPSTGLHQQDINQLLEVIKGL-IDLGNTVILIEHNLDVLS-SADWIIDF---- 161


                  ....*
gi 1119636415 216 aGPKQ 220
Cdd:cd03238   162 -GPGS 165
tagH PRK13545
teichoic acids export protein ATP-binding subunit; Provisional
 16-214 6.13e-07

teichoic acids export protein ATP-binding subunit; Provisional


Pssm-ID: 184130 [Multi-domain]  Cd Length: 549  Bit Score: 51.81  E-value: 6.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKlladykpkelAQIMAVLPQKTDQaftFTVEETV 95
Cdd:PRK13545   40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS----------AALIAISSGLNGQ---LTGIENI 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  96 AFgrypfqTGLFRQQT-EKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQK 174
Cdd:PRK13545  107 EL------KGLMMGLTkEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTK 180

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1119636415 175 DLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK13545  181 KCLDKMNEF-KEQGKTIFFISHSLSQVKSFCTKALWLHYG 219
PRK10938 PRK10938
putative molybdenum transport ATP-binding protein ModF; Provisional
 10-169 6.53e-07

putative molybdenum transport ATP-binding protein ModF; Provisional


Pssm-ID: 182852 [Multi-domain]  Cd Length: 490  Bit Score: 51.55  E-value: 6.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKE-------GRVYLAGKLLADYKPKelaqIMAVLPQ- 81
Cdd:PRK10938  270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYsndltlfGRRRGSGETIWDIKKH----IGYVSSSl 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  82 KTDQAFTFTVEETVAFGrYPFQTGLFRQQTEKDEAIVQEAMEQTGVAD-FAQKPIRELSGGEQQRVYLAQALAQQPRILF 160
Cdd:PRK10938  346 HLDYRVSTSVRNVILSG-FFDSIGIYQAVSDRQQKLAQQWLDILGIDKrTADAPFHSLSWGQQRLALIVRALVKHPTLLI 424


                  ....*....
gi 1119636415 161 LDEPTNFLD 169
Cdd:PRK10938  425 LDEPLQGLD 433
MRP_assoc_pro TIGR00957
multi drug resistance-associated protein (MRP); This model describes multi drug ...
 11-178 1.04e-06

multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]


Pssm-ID: 188098 [Multi-domain]  Cd Length: 1522  Bit Score: 51.48  E-value: 1.04e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   11 GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLladykpkelaqimAVLPQktdQAF--T 88
Cdd:TIGR00957  649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSV-------------AYVPQ---QAWiqN 712

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   89 FTVEETVAFGRyPFQTGLFRQQTEKDEAIVQEAMEQTG-VADFAQKPIrELSGGEQQRVYLAQALAQQPRILFLDEPTNF 167
Cdd:TIGR00957  713 DSLRENILFGK-ALNEKYYQQVLEACALLPDLEILPSGdRTEIGEKGV-NLSGGQKQRVSLARAVYSNADIYLFDDPLSA 790

                          170
                   ....*....|.
gi 1119636415  168 LDLAYQKDLLD 178
Cdd:TIGR00957  791 VDAHVGKHIFE 801
sufC PRK09580
cysteine desulfurase ATPase component; Reviewed
 12-170 1.08e-06

cysteine desulfurase ATPase component; Reviewed


Pssm-ID: 181965 [Multi-domain]  Cd Length: 248  Bit Score: 49.79  E-value: 1.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  12 DSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAK--EGRVYLAGKLLADYKPKELAQIMAVLpqktdqAFTF 89
Cdd:PRK09580   13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEvtGGTVEFKGKDLLELSPEDRAGEGIFM------AFQY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  90 TVEETVAFGRYPFQTGL-----FRQQTEKD----EAIVQEAMEQTGV-ADFAQKPIRE-LSGGEQQRVYLAQALAQQPRI 158
Cdd:PRK09580   87 PVEIPGVSNQFFLQTALnavrsYRGQEPLDrfdfQDLMEEKIALLKMpEDLLTRSVNVgFSGGEKKRNDILQMAVLEPEL 166

                         170
                  ....*....|..
gi 1119636415 159 LFLDEPTNFLDL 170
Cdd:PRK09580  167 CILDESDSGLDI 178
PRK10762 PRK10762
D-ribose transporter ATP binding protein; Provisional
 16-214 1.69e-06

D-ribose transporter ATP binding protein; Provisional


Pssm-ID: 236755 [Multi-domain]  Cd Length: 501  Bit Score: 50.00  E-value: 1.69e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE--------LAQIMAVLPQktdqaf 87
Cdd:PRK10762   20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSsqeagigiIHQELNLIPQ------ 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  88 tFTVEETVAFGRyPFQTGLFRQQTEKdeaIVQEA---MEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEP 164
Cdd:PRK10762   94 -LTIAENIFLGR-EFVNRFGRIDWKK---MYAEAdklLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEP 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1119636415 165 TNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK10762  169 TDALTDTETESLFRVIREL-KSQGRGIVYISHRLKEIFEICDDVTVFRDG 217
PRK10789 PRK10789
SmdA family multidrug ABC transporter permease/ATP-binding protein;
16-163 2.03e-06

SmdA family multidrug ABC transporter permease/ATP-binding protein;


Pssm-ID: 182732 [Multi-domain]  Cd Length: 569  Bit Score: 50.10  E-value: 2.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQkTDQAFTFTVEETV 95
Cdd:PRK10789  331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQ-TPFLFSDTVANNI 409

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  96 AFGRyPFQTglfrqqtekdeaivQEAMEQtgVADFA-------------QKPIRE----LSGGEQQRVYLAQALAQQPRI 158
Cdd:PRK10789  410 ALGR-PDAT--------------QQEIEH--VARLAsvhddilrlpqgyDTEVGErgvmLSGGQKQRISIARALLLNAEI 472


                  ....*
gi 1119636415 159 LFLDE 163
Cdd:PRK10789  473 LILDD 477
PLN03073 PLN03073
ABC transporter F family; Provisional
 7-218 2.03e-06

ABC transporter F family; Provisional


Pssm-ID: 215558 [Multi-domain]  Cd Length: 718  Bit Score: 50.24  E-value: 2.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   7 SGGY-GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLadykpkelaqiMAVLPQKTDQ 85
Cdd:PLN03073  515 SFGYpGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVR-----------MAVFSQHHVD 583

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  86 AFTFTVEETVAFGR-YPfqtGLFRQQtekdeaiVQEAMEQTGVA-DFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:PLN03073  584 GLDLSSNPLLYMMRcFP---GVPEQK-------LRAHLGSFGVTgNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415 164 PTNFLDLayqkDLLD-LIKRLTR-ESGLAAVSvfHDLNTASLYCDELMFMKNGTAGP 218
Cdd:PLN03073  654 PSNHLDL----DAVEaLIQGLVLfQGGVLMVS--HDEHLISGSVDELWVVSEGKVTP 704
PRK15439 PRK15439
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
 1-215 2.49e-06

autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional


Pssm-ID: 185336 [Multi-domain]  Cd Length: 510  Bit Score: 49.66  E-value: 2.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQI-MAVL 79
Cdd:PRK15439   12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLgIYLV 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  80 PQKTDQAFTFTVEETVAFGrypfqtglfRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRIL 159
Cdd:PRK15439   92 PQEPLLFPNLSVKENILFG---------LPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRIL 162

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1119636415 160 FLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNGT 215
Cdd:PRK15439  163 ILDEPTASLTPAETERLFSRIREL-LAQGVGIVFISHKLPEIRQLADRISVMRDGT 217
PRK10522 PRK10522
multidrug transporter membrane component/ATP-binding component; Provisional
 10-215 3.42e-06

multidrug transporter membrane component/ATP-binding component; Provisional


Pssm-ID: 236707 [Multi-domain]  Cd Length: 547  Bit Score: 49.20  E-value: 3.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRL-INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKE-LAQIMAVLpqkTDqaF 87
Cdd:PRK10522  332 YQDNGFsVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDyRKLFSAVF---TD--F 406

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  88 tftveetvafgrYPFQTGLFRQQTEKDEAIVQEAMEQTGVAD---FAQKPIR--ELSGGEQQRVYLAQALAQQPRILFLD 162
Cdd:PRK10522  407 ------------HLFDQLLGPEGKPANPALVEKWLERLKMAHkleLEDGRISnlKLSKGQKKRLALLLALAEERDILLLD 474

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1119636415 163 E------PTnFLDLAYQKdLLDLIkrltRESGLAAVSVFHDlNTASLYCDELMFMKNGT 215
Cdd:PRK10522  475 EwaadqdPH-FRREFYQV-LLPLL----QEMGKTIFAISHD-DHYFIHADRLLEMRNGQ 526
CFTR_protein TIGR01271
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ...
 1-173 4.37e-06

cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]


Pssm-ID: 273530 [Multi-domain]  Cd Length: 1490  Bit Score: 49.14  E-value: 4.37e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415    1 MKAEGLSGGY--GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLpAKEGRVYLAGKLLADYKPKELAQIMAV 78
Cdd:TIGR01271 1218 MDVQGLTAKYteAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL-STEGEIQIDGVSWNSVTLQTWRKAFGV 1296

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   79 LPQKTdqaFTFTveetvafgrypfqtGLFRQQTE-----KDEAIVQEAMEQTGVADFAQKPIR----------ELSGGEQ 143
Cdd:TIGR01271 1297 IPQKV---FIFS--------------GTFRKNLDpyeqwSDEEIWKVAEEVGLKSVIEQFPDKldfvlvdggyVLSNGHK 1359

                          170       180       190
                   ....*....|....*....|....*....|.
gi 1119636415  144 QRVYLAQALAQQPRILFLDEPTNFLD-LAYQ 173
Cdd:TIGR01271 1360 QLMCLARSILSKAKILLLDEPSAHLDpVTLQ 1390
ycf16 CHL00131
sulfate ABC transporter protein; Validated
 1-170 5.21e-06

sulfate ABC transporter protein; Validated


Pssm-ID: 214372 [Multi-domain]  Cd Length: 252  Bit Score: 47.71  E-value: 5.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKtTLLHLLTGTLPA---KEGRVYLAGKLLADYKPKELAQIMA 77
Cdd:CHL00131    8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGK-STLSKVIAGHPAykiLEGDILFKGESILDLEPEERAHLGI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  78 VLpqktdqAFTFTVE----ETVAFGRYPFQTGL-FRQQTEKD-----EAIVQE----AMEQTgvadFAQKPIRE-LSGGE 142
Cdd:CHL00131   87 FL------AFQYPIEipgvSNADFLRLAYNSKRkFQGLPELDpleflEIINEKlklvGMDPS----FLSRNVNEgFSGGE 156

                         170       180
                  ....*....|....*....|....*...
gi 1119636415 143 QQRVYLAQALAQQPRILFLDEPTNFLDL 170
Cdd:CHL00131  157 KKRNEILQMALLDSELAILDETDSGLDI 184
PRK13543 PRK13543
heme ABC exporter ATP-binding protein CcmA;
1-170 1.33e-05

heme ABC exporter ATP-binding protein CcmA;


Pssm-ID: 184129 [Multi-domain]  Cd Length: 214  Bit Score: 46.00  E-value: 1.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKllaDYKPKELAQIMAVLP 80
Cdd:PRK13543   12 LAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK---TATRGDRSRFMAYLG 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  81 QKTDQAFTFTVEETVAF-----GRYPFQTGlfrqqtekdeaivQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQ 155
Cdd:PRK13543   89 HLPGLKADLSTLENLHFlcglhGRRAKQMP-------------GSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSP 155

                         170
                  ....*....|....*
gi 1119636415 156 PRILFLDEPTNFLDL 170
Cdd:PRK13543  156 APLWLLDEPYANLDL 170
PRK10636 PRK10636
putative ABC transporter ATP-binding protein; Provisional
 132-170 1.74e-05

putative ABC transporter ATP-binding protein; Provisional


Pssm-ID: 236729 [Multi-domain]  Cd Length: 638  Bit Score: 47.09  E-value: 1.74e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1119636415 132 QKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDL 170
Cdd:PRK10636  144 ERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDL 182
PLN03073 PLN03073
ABC transporter F family; Provisional
 128-170 2.17e-05

ABC transporter F family; Provisional


Pssm-ID: 215558 [Multi-domain]  Cd Length: 718  Bit Score: 46.78  E-value: 2.17e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1119636415 128 ADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDL 170
Cdd:PLN03073  335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDL 377
PRK15064 PRK15064
ABC transporter ATP-binding protein; Provisional
 129-169 2.47e-05

ABC transporter ATP-binding protein; Provisional


Pssm-ID: 237894 [Multi-domain]  Cd Length: 530  Bit Score: 46.42  E-value: 2.47e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1119636415 129 DFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLD 169
Cdd:PRK15064  147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD 187
PTZ00243 PTZ00243
ABC transporter; Provisional
 15-169 3.62e-05

ABC transporter; Provisional


Pssm-ID: 240327 [Multi-domain]  Cd Length: 1560  Bit Score: 46.31  E-value: 3.62e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   15 LINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYlAGKLLAdYKPKElAQIMAVlpqktdqaftfTVEET 94
Cdd:PTZ00243   675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW-AERSIA-YVPQQ-AWIMNA-----------TVRGN 740

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   95 VAFgrypFqtglfrqqTEKDEAIVQEAMEQTGV-ADFAQKP------IRE----LSGGEQQRVYLAQALAQQPRILFLDE 163
Cdd:PTZ00243   741 ILF----F--------DEEDAARLADAVRVSQLeADLAQLGggleteIGEkgvnLSGGQKARVSLARAVYANRDVYLLDD 808


                   ....*.
gi 1119636415  164 PTNFLD 169
Cdd:PTZ00243   809 PLSALD 814
ABC_UvrA_II cd03271
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ...
 134-198 6.07e-05

ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.


Pssm-ID: 213238 [Multi-domain]  Cd Length: 261  Bit Score: 44.53  E-value: 6.07e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 134 PIRELSGGEQQRVYLAQALAQQPR---ILFLDEPTNFLDLAYQKDLLDLIKRLTrESGLAAVSVFHDL 198
Cdd:cd03271   166 PATTLSGGEAQRIKLAKELSKRSTgktLYILDEPTTGLHFHDVKKLLEVLQRLV-DKGNTVVVIEHNL 232
PTZ00265 PTZ00265
multidrug resistance protein (mdr1); Provisional
 137-213 1.66e-04

multidrug resistance protein (mdr1); Provisional


Pssm-ID: 240339 [Multi-domain]  Cd Length: 1466  Bit Score: 44.25  E-value: 1.66e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119636415  137 ELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASlYCDELMFMKN 213
Cdd:PTZ00265   579 KLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIR-YANTIFVLSN 654
PRK01156 PRK01156
chromosome segregation protein; Provisional
 135-188 1.75e-04

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 44.12  E-value: 1.75e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 135 IRELSGGEQQ------RVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESG 188
Cdd:PRK01156  799 IDSLSGGEKTavafalRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSS 858
uvra TIGR00630
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ...
 138-198 2.02e-04

excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273184 [Multi-domain]  Cd Length: 925  Bit Score: 43.85  E-value: 2.02e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119636415 138 LSGGEQQRVYLAQALAQQ---PRILFLDEPTNFLDLAYQKDLLDLIKRLtRESGLAAVSVFHDL 198
Cdd:TIGR00630 830 LSGGEAQRIKLAKELSKRstgRTLYILDEPTTGLHFDDIKKLLEVLQRL-VDKGNTVVVIEHNL 892
SbcC_Walker_B pfam13558
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from ...
 124-182 4.42e-04

SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homolog SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is separated of the Walker A domain by a long coiled-coil domain and forms the nucleotide-binding domain (NBD) when the coiled coils fold back on themselves and bring together Walker A and B domains. Two RAD50-NBDs forms heterotetramers with a Mre11 nuclease dimer that assemble as catalytic head module that binds and cleaves DNA in an ATP-dependent reaction. Through secondary structural analysis, it has been suggested that there is a wide structural conservation in the Rad50/SMC protein family as seen in structural similarities between RAD50's hook and ABC-ATPase MukB's elbow region.


Pssm-ID: 463921 [Multi-domain]  Cd Length: 90  Bit Score: 39.14  E-value: 4.42e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1119636415 124 QTGVADFAQKPIRELSGGEQQR-VY--LAQALAQQ----------PRILFLDEPTNFLDLAYQKDLLDLIKR 182
Cdd:pfam13558  19 EDGSEVETYRRSGGLSGGEKQLlAYlpLAAALAAQygsaegrppaPRLVFLDEAFAKLDEENIRTALELLRA 90
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 136-180 4.87e-04

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 40.43  E-value: 4.87e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 1119636415  136 RELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLI 180
Cdd:smart00382  59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLE 103
GguA NF040905
sugar ABC transporter ATP-binding protein;
138-165 5.63e-04

sugar ABC transporter ATP-binding protein;


Pssm-ID: 468840 [Multi-domain]  Cd Length: 500  Bit Score: 42.08  E-value: 5.63e-04
                          10        20
                  ....*....|....*....|....*...
gi 1119636415 138 LSGGEQQRVYLAQALAQQPRILFLDEPT 165
Cdd:NF040905  405 LSGGNQQKVVLSKWLFTDPDVLILDEPT 432
3a01205 TIGR00956
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
 14-171 5.97e-04

Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]


Pssm-ID: 273362 [Multi-domain]  Cd Length: 1394  Bit Score: 42.40  E-value: 5.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   14 RLINNVSLTVEKGEFLGILGPNGSGK----TTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQImaVLPQKTDQAF-T 88
Cdd:TIGR00956   75 DILKPMDGLIKPGELTVVLGRPGSGCstllKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDV--VYNAETDVHFpH 152

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   89 FTVEETVAFG---RYPfQT---GLFRQQTEKDEAIVQEAM------EQTGVA-DFaqkpIRELSGGEQQRVYLAQALAQQ 155
Cdd:TIGR00956  153 LTVGETLDFAarcKTP-QNrpdGVSREEYAKHIADVYMATyglshtRNTKVGnDF----VRGVSGGERKRVSIAEASLGG 227

                          170
                   ....*....|....*.
gi 1119636415  156 PRILFLDEPTNFLDLA 171
Cdd:TIGR00956  228 AKIQCWDNATRGLDSA 243
PLN03130 PLN03130
ABC transporter C family member; Provisional
 19-214 8.19e-04

ABC transporter C family member; Provisional


Pssm-ID: 215595 [Multi-domain]  Cd Length: 1622  Bit Score: 42.03  E-value: 8.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   19 VSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLLADYKPKELAQIMAVLPQkTDQAFTFTVEetvaFG 98
Cdd:PLN03130  1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQ-APVLFSGTVR----FN 1332

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   99 RYPFqtglfrqqTEKDEAIVQEAMEQTGVADFAQKPIREL-----------SGGEQQRVYLAQALAQQPRILFLDEPTNF 167
Cdd:PLN03130  1333 LDPF--------NEHNDADLWESLERAHLKDVIRRNSLGLdaevseagenfSVGQRQLLSLARALLRRSKILVLDEATAA 1404

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1119636415  168 LDLAYQKdlldLIKRLTRES--GLAAVSVFHDLNTAsLYCDELMFMKNG 214
Cdd:PLN03130  1405 VDVRTDA----LIQKTIREEfkSCTMLIIAHRLNTI-IDCDRILVLDAG 1448
ABCC_CFTR2 cd03289
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ...
 1-252 9.25e-04

ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.


Pssm-ID: 213256 [Multi-domain]  Cd Length: 275  Bit Score: 40.99  E-value: 9.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   1 MKAEGLSGGY--GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLpAKEGRVYLAGKLLADYKPKELAQIMAV 78
Cdd:cd03289     3 MTVKDLTAKYteGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGDIQIDGVSWNSVPLQKWRKAFGV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  79 LPQKTdqaFTFtveetvafgrypfqTGLFRQQTE-----KDEAIVQEAMEQTGVADFAQKPIR----------ELSGGEQ 143
Cdd:cd03289    82 IPQKV---FIF--------------SGTFRKNLDpygkwSDEEIWKVAEEVGLKSVIEQFPGQldfvlvdggcVLSHGHK 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415 144 QRVYLAQALAQQPRILFLDEPTNFLD-LAYQkdlldLIKRLTRESgLAAVSVF---HDLNtASLYCDELMFMKNGTAGPK 219
Cdd:cd03289   145 QLMCLARSVLSKAKILLLDEPSAHLDpITYQ-----VIRKTLKQA-FADCTVIlseHRIE-AMLECQRFLVIEENKVRQY 217

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1119636415 220 QKPEYAVTEQSI--KAVYDTDVTALV-------HQSSPKPMI 252
Cdd:cd03289   218 DSIQKLLNEKSHfkQAISPSDRLKLFprrnsskSKRKPRPQI 259
PRK13546 PRK13546
teichoic acids export ABC transporter ATP-binding subunit TagH;
16-214 1.00e-03

teichoic acids export ABC transporter ATP-binding subunit TagH;


Pssm-ID: 184131 [Multi-domain]  Cd Length: 264  Bit Score: 40.57  E-value: 1.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  16 INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAGKLladykpkelaQIMAVLPQKTDQaftFTVEETV 95
Cdd:PRK13546   40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV----------SVIAISAGLSGQ---LTGIENI 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  96 AFGRypFQTGLFRQQTEKdeaIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKD 175
Cdd:PRK13546  107 EFKM--LCMGFKRKEIKA---MTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQK 181

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1119636415 176 LLDLIKRLtRESGLAAVSVFHDLNTASLYCDELMFMKNG 214
Cdd:PRK13546  182 CLDKIYEF-KEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219
UvrA COG0178
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
138-165 1.12e-03

Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];


Pssm-ID: 439948 [Multi-domain]  Cd Length: 941  Bit Score: 41.55  E-value: 1.12e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1119636415 138 LSGGEQQRVYLAQALA--QQPRILF-LDEPT 165
Cdd:COG0178   827 LSGGEAQRVKLASELSkrSTGKTLYiLDEPT 857
PLN03140 PLN03140
ABC transporter G family member; Provisional
 1-234 1.53e-03

ABC transporter G family member; Provisional


Pssm-ID: 215599 [Multi-domain]  Cd Length: 1470  Bit Score: 40.98  E-value: 1.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415    1 MKAEGLSGGYGDSRL--INNVSLTVEKGEFLGILGPNGSGKTTLLHLLTgtlpakeGRV---YLAGKLLADYKPKE---L 72
Cdd:PLN03140   879 MPAEMKEQGVTEDRLqlLREVTGAFRPGVLTALMGVSGAGKTTLMDVLA-------GRKtggYIEGDIRISGFPKKqetF 951

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   73 AQIMAVLPQKTDQAFTFTVEETV---AFGRYPFQTGLFRQQTEKDEaiVQEAMEQTGVAD--FAQKPIRELSGGEQQRVY 147
Cdd:PLN03140   952 ARISGYCEQNDIHSPQVTVRESLiysAFLRLPKEVSKEEKMMFVDE--VMELVELDNLKDaiVGLPGVTGLSTEQRKRLT 1029

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  148 LAQALAQQPRILFLDEPTNFLDlAYQKDLLDLIKRLTRESGLAAVSVFH----DLNTASlycDELMFMKNGT----AGPK 219
Cdd:PLN03140  1030 IAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTVDTGRTVVCTIHqpsiDIFEAF---DELLLMKRGGqviySGPL 1105

                          250
                   ....*....|....*..
gi 1119636415  220 QKPEYAVTE--QSIKAV 234
Cdd:PLN03140  1106 GRNSHKIIEyfEAIPGV 1122
ABC_UvrA_I cd03270
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ...
 138-200 3.40e-03

ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.


Pssm-ID: 213237 [Multi-domain]  Cd Length: 226  Bit Score: 38.78  E-value: 3.40e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415 138 LSGGEQQRVYLAQAL-AQQPRILF-LDEPTNFLdlaYQKD---LLDLIKRLtRESGLAAVSVFHDLNT 200
Cdd:cd03270   138 LSGGEAQRIRLATQIgSGLTGVLYvLDEPSIGL---HPRDndrLIETLKRL-RDLGNTVLVVEHDEDT 201
PRK13540 PRK13540
cytochrome c biogenesis protein CcmA; Provisional
 10-196 4.36e-03

cytochrome c biogenesis protein CcmA; Provisional


Pssm-ID: 184127 [Multi-domain]  Cd Length: 200  Bit Score: 38.39  E-value: 4.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  10 YGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKEGRVYLAG----KLLADYKpkelaQIMAVLPQKTDQ 85
Cdd:PRK13540   11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERqsikKDLCTYQ-----KQLCFVGHRSGI 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415  86 AFTFTVEETVAFGRYPFQTGLfrqqtEKDEAIVQEAMEQtgVADFaqkPIRELSGGEQQRVYLAQALAQQPRILFLDEPT 165
Cdd:PRK13540   86 NPYLTLRENCLYDIHFSPGAV-----GITELCRLFSLEH--LIDY---PCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL 155

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1119636415 166 NFLDlayQKDLLDLIKRLT--RESGLAAVSVFH 196
Cdd:PRK13540  156 VALD---ELSLLTIITKIQehRAKGGAVLLTSH 185
3a01205 TIGR00956
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
 11-214 8.28e-03

Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]


Pssm-ID: 273362 [Multi-domain]  Cd Length: 1394  Bit Score: 38.55  E-value: 8.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   11 GDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTlpaKEGRVYLAGKLLADYKPKE--LAQIMAVLPQKTDQAFT 88
Cdd:TIGR00956  774 EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAER---VTTGVITGGDRLVNGRPLDssFQRSIGYVQQQDLHLPT 850

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   89 FTVEETVAFGRYpfqtglFRQ-----QTEKDEaIVQEAMEQTGVADFAQKPIRELSGG---EQ-QRVYLAQALAQQPR-I 158
Cdd:TIGR00956  851 STVRESLRFSAY------LRQpksvsKSEKME-YVEEVIKLLEMESYADAVVGVPGEGlnvEQrKRLTIGVELVAKPKlL 923

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1119636415  159 LFLDEPTNFLDLAYQKDLLDLIKRLTrESGLAAVSVFHDlNTASLYC--DELMFMKNG 214
Cdd:TIGR00956  924 LFLDEPTSGLDSQTAWSICKLMRKLA-DHGQAILCTIHQ-PSAILFEefDRLLLLQKG 979
PLN03232 PLN03232
ABC transporter C family member; Provisional
 16-169 8.67e-03

ABC transporter C family member; Provisional


Pssm-ID: 215640 [Multi-domain]  Cd Length: 1495  Bit Score: 38.80  E-value: 8.67e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   16 INNVSLTVEKGEFLGILGPNGSGKTTllhlltgtlpakegrvyLAGKLLADYKPKELAQI-----MAVLPQkTDQAFTFT 90
Cdd:PLN03232   633 LSDINLEIPVGSLVAIVGGTGEGKTS-----------------LISAMLGELSHAETSSVvirgsVAYVPQ-VSWIFNAT 694

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119636415   91 VEETVAFGRyPFQTGlfRQQTEKDEAIVQEAMEQTGVADFAQKPIR--ELSGGEQQRVYLAQALAQQPRILFLDEPTNFL 168
Cdd:PLN03232   695 VRENILFGS-DFESE--RYWRAIDVTALQHDLDLLPGRDLTEIGERgvNISGGQKQRVSMARAVYSNSDIYIFDDPLSAL 771


                   .
gi 1119636415  169 D 169
Cdd:PLN03232   772 D 772
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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