|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
339-598 |
3.30e-26 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 108.17 E-value: 3.30e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 339 EIHSDTAIAYNNVGCLYDDMGKYTDALKYHFRAQEIreevlgkaDLQTATSYNNIGLIYNQMVDYPKAMEYFRKALDIye 418
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL-- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 419 rilgaeNDYTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDekilginhPETAKLYNNIGIVYHDMGDYQKALDYYNKAI 498
Cdd:COG0457 72 ------DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERAL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 499 NVDkealginhPETAKVYNNIGCLYDDIGEYQKGLDnhllALKIREKVLGKDHPHTAQSYHNIGVPYDLMGDHQKALHYY 578
Cdd:COG0457 138 ELD--------PDDADALYNLGIALEKLGRYEEALE----LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
|
250 260
....*....|....*....|
gi 1124395687 579 LKALEIQERTLGKEHLETAK 598
Cdd:COG0457 206 ALRKKLAILTLAALAELLLL 225
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
304-639 |
9.93e-25 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 110.39 E-value: 9.93e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 304 QILLDYGDFLKKYARYSQAEDIYKRLIVLSEEIYGEIHSDTAIAYNNVGCLYDDMGKYTDALkyhfraqEIREEVL---- 379
Cdd:NF040586 393 RLLLDQVRYLYLRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAR-------ELDEDTLerqr 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 380 -----GKADLQTATSYNNIGLIYNQMVDYPKAMEYFRKALDIYERILGAENDYTSTAYNNIGCLLEDMGEYSKALEYHLK 454
Cdd:NF040586 466 rvlglGEDHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDRE 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 455 ALVVDEKILGINHPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKEALGI-NHPETAKVYNNIGCLYDDIGEYQKGL 533
Cdd:NF040586 546 VLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVLGGpDHPDTLRAAKSLAVALRRAGRLEEAL 625
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 534 DNHLLALKIREKVLGKDHPHT---AQSYHNIgvpYDLMGDHQKALHYYLKALEIQERTLGKEHLET--AKTNYCIggIYD 608
Cdd:NF040586 626 ELAEDTYERYRRRFGPDHPDTlaaALSLAND---LRALGDADEARELAREVLDRYRRVLGEDHPFTlaCRNNLAV--LLR 700
|
330 340 350
....*....|....*....|....*....|.
gi 1124395687 609 SQGDYHKALEHYKKALDIQEKVLGKDHPDVL 639
Cdd:NF040586 701 ALGDPEEARELAEAALEGLRERLGPDHPYTL 731
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
359-659 |
2.95e-22 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 102.69 E-value: 2.95e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 359 GKYTDALKYHFRAQEIREEVLGKADLQTATSYNNIGLIYNQMVDYPKAMEYFRKALDIYERILGAEND--YTSTAYNNIG 436
Cdd:NF040586 406 GDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGLGEDhpHTLMTAGGLG 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 437 CLLEDMGEYSKALEYHLKALVVDEKILGINHPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKEALGINHPETAKVY 516
Cdd:NF040586 486 ADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSA 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 517 NNIGCLYDDIGEYQKGLDnhLL--AL-KIREKVLGKDHPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEIQERTLGKEH 593
Cdd:NF040586 566 NNLARDLRELGRYAEALD--LLeeALeRYREVLGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDH 643
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1124395687 594 LET--AKTNYCIggIYDSQGDYHKALEHYKKALDIQEKVLGKDHPDVLKSYNLIGTIYREIEDYHNAL 659
Cdd:NF040586 644 PDTlaAALSLAN--DLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAR 709
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
318-639 |
1.12e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 100.76 E-value: 1.12e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 318 RYSQA----EDIYKRLivLSEEIYGEIHSDTAIAYNNVGClydDM---GKYTDALKYHFRAQEIREEVLGKADLQTATSY 390
Cdd:NF040586 449 RYEEAreldEDTLERQ--RRVLGLGEDHPHTLMTAGGLGA---DLralGRFREALELDEETLERHRRVFGEDHPRTLRAA 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 391 NNIGLIYNQMVDYPKAMEYFRKALDIYERILGAENDYTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDEKILGI-NHPE 469
Cdd:NF040586 524 NNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVLGGpDHPD 603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 470 TAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKEALGINHPETAKVYNNIGCLYDDIGEYQKGLDnhlLALKIRE---KV 546
Cdd:NF040586 604 TLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARE---LAREVLDryrRV 680
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 547 LGKDHPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEIQERTLGKEH---LeTAKTNYciGGIYDSQGDYHKALEHyKKA 623
Cdd:NF040586 681 LGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHpytL-AAAVNL--ANDLAALGDLDAALGE-EAL 756
|
330 340
....*....|....*....|.
gi 1124395687 624 LDIQE-----KVLGKDHPDVL 639
Cdd:NF040586 757 ERLRRllgedLRAGPDHPDTL 777
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
318-639 |
7.36e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 98.07 E-value: 7.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 318 RYSQA----EDIYKRLivlsEEIYGEIHSDTAIAYNNVGCLYDDMGKYTDALKYHFRAQEIREEVLGKADLQTATSYNNI 393
Cdd:NF040586 493 RFREAleldEETLERH----RRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNL 568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 394 GLIYNQMVDYPKAMEYFRKALDIYERILGAEND-YTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDEKILGINHPET-- 470
Cdd:NF040586 569 ARDLRELGRYAEALDLLEEALERYREVLGGPDHpDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTla 648
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 471 AKLynNIGIVYHDMGDYQKALDYYNKAINVDKEALGINHPETAKVYNNIGCLYDDIGEYQKGLDnhlLALKIREK---VL 547
Cdd:NF040586 649 AAL--SLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARE---LAEAALEGlreRL 723
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 548 GKDHPHTAQSYHNIGVPYDLMGDHQKALHyyLKALEIQERTLGK------EHLET--AKTNYCIggiyDSQGDYHK--AL 617
Cdd:NF040586 724 GPDHPYTLAAAVNLANDLAALGDLDAALG--EEALERLRRLLGEdlragpDHPDTlaCAANLAL----DLRATGRTeeAE 797
|
330 340
....*....|....*....|..
gi 1124395687 618 EHYKKALDIQEKVLGKDHPDVL 639
Cdd:NF040586 798 ELRADTLARLRRVLGPDHPDTV 819
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
485-765 |
5.79e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 88.82 E-value: 5.79e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 485 GDYQKALDYYNKAINVDKEALGINHPETAKVYNNIGCLYDDIGEYQKG--LDNHLLALKIREKVLGKDHPHTAQSYHNIG 562
Cdd:NF040586 406 GDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAreLDEDTLERQRRVLGLGEDHPHTLMTAGGLG 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 563 VpyDLM--GDHQKALHYYLKALEIQERTLGKEHLET--AKTNYCIGgiYDSQGDYHKALEHYKKALDIQEKVLGKDHPDV 638
Cdd:NF040586 486 A--DLRalGRFREALELDEETLERHRRVFGEDHPRTlrAANNLAVS--LRLLGDYREALELDREVLRRRRRVLGPDHPRT 561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 639 LKSYNLIGTIYREIEDYHNALIYRQKEIDYHLRN-SGNNSIKTAIAYNNVGAQYRDLTLYEKAIEYISKAYEIAVKI--- 714
Cdd:NF040586 562 LLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRfgp 641
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1124395687 715 --EDT-TAKASYLNrlgrVYALMGNLEMARNKFKEAIDLLP----EDHPEAVDSQNRL 765
Cdd:NF040586 642 dhPDTlAAALSLAN----DLRALGDADEARELAREVLDRYRrvlgEDHPFTLACRNNL 695
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
478-754 |
7.64e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 78.62 E-value: 7.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 478 GIVYHDMGDYQKALDYYNKAINVDkealginhPETAKVYNNIGCLYDDIGEYQKgldnhllALKIREKVLGKDhPHTAQS 557
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELD--------PETVEAHLALGNLYRRRGEYDR-------AIRIHQKLLERD-PDRAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 558 YHNIGVPYDLMGDHQKALHYYLKALEIQErtlgkehlETAKTNYCIGGIYDSQGDYHKALEHYKKALDIQekvlgkdhPD 637
Cdd:COG2956 79 LLELAQDYLKAGLLDRAEELLEKLLELDP--------DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG--------PE 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 638 VLKSYNLIGTIYREIEDYHNALIYRQKEIDYHLRNsgnnsiktAIAYNNVGAQYRDLTLYEKAIEYISKAYEIAvkiedt 717
Cdd:COG2956 143 NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC--------ARALLLLAELYLEQGDYEEAIAALERALEQD------ 208
|
250 260 270
....*....|....*....|....*....|....*..
gi 1124395687 718 TAKASYLNRLGRVYALMGNLEMARNKFKEAIDLLPED 754
Cdd:COG2956 209 PDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
427-503 |
2.21e-15 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 71.65 E-value: 2.21e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1124395687 427 YTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDEKILGINHPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKE 503
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
595-661 |
3.48e-12 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 62.40 E-value: 3.48e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1124395687 595 ETAKTNYCIGGIYDSQGDYHKALEHYKKALDIQEKVLGKDHPDVLKSYNLIGTIYREIEDYHNALIY 661
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALEL 67
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
443-528 |
4.21e-07 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 50.44 E-value: 4.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 443 GEYSKALEYHLKALVVDEKilGINHPETakLYNnIGIVYHDMGDYQKALDYYNKAINvdkealgiNHPETAKVYNNIGCL 522
Cdd:PRK02603 49 GEYAEALENYEEALKLEED--PNDRSYI--LYN-MGIIYASNGEHDKALEYYHQALE--------LNPKQPSALNNIAVI 115
|
....*.
gi 1124395687 523 YDDIGE 528
Cdd:PRK02603 116 YHKRGE 121
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
471-503 |
3.13e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 44.36 E-value: 3.13e-06
10 20 30
....*....|....*....|....*....|...
gi 1124395687 471 AKLYNNIGIVYHDMGDYQKALDYYNKAINVDKE 503
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
478-748 |
1.17e-05 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 48.11 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 478 GIVY-HDMGDYQKALDYYNKAI------NVDK---EALGInHPETAKVY---NNIGCLYDDI-GEYQKGLDNHLLALKIR 543
Cdd:cd24145 14 ALYYeSDKPDPQKALKYYKEALeqadelGMDPfsdEVTGI-RIKIAEMLeklGMYKAAYEVLeRLYLDCLRWTLKDDESE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 544 EKVLGKDHPHTAQSYHNIGVPYDlMGDHQKALHYYLKALEIQERTLGKEHLETAKTNYC--IGGIYDSQGDYHKALEHYK 621
Cdd:cd24145 93 RGHLIKRDLRISIKLGELNKDSE-LGKWELRERLLKKAVEILLKLGELWMSPSEVGAFLeeLATAYDLYGRFCLALPLYM 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 622 KALDIQEKVLGKDHpdvlksyNLIGTIYREIEDYHNALIYRQKEIDYHLRNSGNNSIKTAIAYnnvgaqyrdltlYEKAI 701
Cdd:cd24145 172 QALSLKGQILLSQA-------NCHSLVLMNNEAAELALHALRKPLSSTLIEASRLPQKSRDQL------------LEAAL 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1124395687 702 EYISKAYEIAVKIE--------DTTAKASYLNrLGRVYALMGNLEMARNKFKEAI 748
Cdd:cd24145 233 KWAQKALDVAKSIKpkdrdpecDQACALALYN-LGVIAEMLGNLDEARKLYKEAI 286
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
361-759 |
1.66e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.54 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 361 YTDALkYHFRAQEIREEVLGKAD-LQTATSYNNI----GLIYNQMVDYPKAMEYFRKALDIYE------RILGA---END 426
Cdd:TIGR02917 265 YLKAL-VDFQKKNYEDARETLQDaLKSAPEYLPAlllaGASEYQLGNLEQAYQYLNQILKYAPnshqarRLLASiqlRLG 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 427 YTSTAYNNIGCLLE-----------------DMGEYSKALEYHLKAlvvdekilGINHPETAKLYNNIGIVYHDMGDYQK 489
Cdd:TIGR02917 344 RVDEAIATLSPALGldpddpaalsllgeaylALGDFEKAAEYLAKA--------TELDPENAAARTQLGISKLSQGDPSE 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 490 ALDYYNKAINVDkealginhPETAKVYNNIGCLYDDIGEYQKgldnhllALKIREKvLGKDHPHTAQSYHNIGVPYDLMG 569
Cdd:TIGR02917 416 AIADLETAAQLD--------PELGRADLLLILSYLRSGQFDK-------ALAAAKK-LEKKQPDNASLHNLLGAIYLGKG 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 570 DHQKALHYYLKALEIQErtlgkehletaktnyciggiydsqgDYHKALeHYKKALDIQEKvlgkdHPDVLKSYnligtiy 649
Cdd:TIGR02917 480 DLAKAREAFEKALSIEP-------------------------DFFPAA-ANLARIDIQEG-----NPDDAIQR------- 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 650 reiedYHNALIYRQKEIDYHLR------NSGNNS-----IKTAIAYNNvgaqyRDLTLYEKAIEY------ISKAYEIAV 712
Cdd:TIGR02917 522 -----FEKVLTIDPKNLRAILAlaglylRTGNEEeavawLEKAAELNP-----QEIEPALALAQYylgkgqLKKALAILN 591
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1124395687 713 KIEDTTAKA-SYLNRLGRVYALMGNLEMARNKFKEAIDLLPeDHPEAV 759
Cdd:TIGR02917 592 EAADAAPDSpEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALAL 638
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
569-649 |
1.75e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 45.82 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 569 GDHQKALHYYLKALEIQERTLGKehletAKTNYCIGGIYDSQGDYHKALEHYKKALDIQEKVlgkdhPDVLKSynlIGTI 648
Cdd:PRK02603 49 GEYAEALENYEEALKLEEDPNDR-----SYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-----PSALNN---IAVI 115
|
.
gi 1124395687 649 Y 649
Cdd:PRK02603 116 Y 116
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
181-375 |
1.95e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.98 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 181 EYQQILFDTAKRIAQLQGERITERMRRAMDAFNDGKVREANIILDEAEADARRNLEDYKQSkeITDLKRQAVIN-SIEEL 259
Cdd:COG3914 37 LAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEA--LALYRRALALNpDNAEA 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 260 LLKTSTIMADAsipieERIESTENLYAQADEMskvaeydKNKFAQILLDYGDFLKKYARYSQAEDIYKRLIvlseeiygE 339
Cdd:COG3914 115 LFNLGNLLLAL-----GRLEEALAALRRALAL-------NPDFAEAYLNLGEALRRLGRLEEAIAALRRAL--------E 174
|
170 180 190
....*....|....*....|....*....|....*.
gi 1124395687 340 IHSDTAIAYNNVGCLYDDMGKYTDALKYHFRAQEIR 375
Cdd:COG3914 175 LDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
597-629 |
1.57e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 1.57e-03
10 20 30
....*....|....*....|....*....|...
gi 1124395687 597 AKTNYCIGGIYDSQGDYHKALEHYKKALDIQEK 629
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
593-759 |
6.66e-03 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 38.86 E-value: 6.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 593 HLETAKTNYCIGGIYDSQGDYHKALEHYKKALDIQekvlgkdhPDVLKSYNLIGTIYREIEDYHNALIYRQKEIdyhlrN 672
Cdd:TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD--------PDDYLAYLALALYYQQLGELEKAEDSFRRAL-----T 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 673 SGNNSiktAIAYNNVGAQYRDLTLYEKAIEYISKAyeIAVKIEDTTAKaSYLNrLGRVYALMGNLEMARNKFKEAIDLLP 752
Cdd:TIGR02521 94 LNPNN---GDVLNNYGTFLCQQGKYEQAMQQFEQA--IEDPLYPQPAR-SLEN-AGLCALKAGDFDKAEKYLTRALQIDP 166
|
....*..
gi 1124395687 753 eDHPEAV 759
Cdd:TIGR02521 167 -QRPESL 172
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
339-598 |
3.30e-26 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 108.17 E-value: 3.30e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 339 EIHSDTAIAYNNVGCLYDDMGKYTDALKYHFRAQEIreevlgkaDLQTATSYNNIGLIYNQMVDYPKAMEYFRKALDIye 418
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL-- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 419 rilgaeNDYTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDekilginhPETAKLYNNIGIVYHDMGDYQKALDYYNKAI 498
Cdd:COG0457 72 ------DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERAL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 499 NVDkealginhPETAKVYNNIGCLYDDIGEYQKGLDnhllALKIREKVLGKDHPHTAQSYHNIGVPYDLMGDHQKALHYY 578
Cdd:COG0457 138 ELD--------PDDADALYNLGIALEKLGRYEEALE----LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
|
250 260
....*....|....*....|
gi 1124395687 579 LKALEIQERTLGKEHLETAK 598
Cdd:COG0457 206 ALRKKLAILTLAALAELLLL 225
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
468-733 |
6.38e-26 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 107.40 E-value: 6.38e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 468 PETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDkealginhPETAKVYNNIGCLYDDIGEYQKGLDNHLLALKIrekvl 547
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELD--------PDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 548 gkdHPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEIQErtlgkehlETAKTNYCIGGIYDSQGDYHKALEHYKKALDIQ 627
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELDP--------DDAEALYNLGLALLELGRYDEAIEAYERALELD 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 628 ekvlgkdhPDVLKSYNLIGTIYREIEDYHNALIYRQKEIDYHLRNSGNNSIKTAIAYNNVGAQYRDLTLYEKAIEYISKA 707
Cdd:COG0457 141 --------PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
|
250 260
....*....|....*....|....*.
gi 1124395687 708 YEIAVKIEDTTAKASYLNRLGRVYAL 733
Cdd:COG0457 213 ILTLAALAELLLLALALLLALRLAAL 238
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
304-639 |
9.93e-25 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 110.39 E-value: 9.93e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 304 QILLDYGDFLKKYARYSQAEDIYKRLIVLSEEIYGEIHSDTAIAYNNVGCLYDDMGKYTDALkyhfraqEIREEVL---- 379
Cdd:NF040586 393 RLLLDQVRYLYLRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAR-------ELDEDTLerqr 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 380 -----GKADLQTATSYNNIGLIYNQMVDYPKAMEYFRKALDIYERILGAENDYTSTAYNNIGCLLEDMGEYSKALEYHLK 454
Cdd:NF040586 466 rvlglGEDHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDRE 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 455 ALVVDEKILGINHPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKEALGI-NHPETAKVYNNIGCLYDDIGEYQKGL 533
Cdd:NF040586 546 VLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVLGGpDHPDTLRAAKSLAVALRRAGRLEEAL 625
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 534 DNHLLALKIREKVLGKDHPHT---AQSYHNIgvpYDLMGDHQKALHYYLKALEIQERTLGKEHLET--AKTNYCIggIYD 608
Cdd:NF040586 626 ELAEDTYERYRRRFGPDHPDTlaaALSLAND---LRALGDADEARELAREVLDRYRRVLGEDHPFTlaCRNNLAV--LLR 700
|
330 340 350
....*....|....*....|....*....|.
gi 1124395687 609 SQGDYHKALEHYKKALDIQEKVLGKDHPDVL 639
Cdd:NF040586 701 ALGDPEEARELAEAALEGLRERLGPDHPYTL 731
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
359-659 |
2.95e-22 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 102.69 E-value: 2.95e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 359 GKYTDALKYHFRAQEIREEVLGKADLQTATSYNNIGLIYNQMVDYPKAMEYFRKALDIYERILGAEND--YTSTAYNNIG 436
Cdd:NF040586 406 GDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGLGEDhpHTLMTAGGLG 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 437 CLLEDMGEYSKALEYHLKALVVDEKILGINHPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKEALGINHPETAKVY 516
Cdd:NF040586 486 ADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSA 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 517 NNIGCLYDDIGEYQKGLDnhLL--AL-KIREKVLGKDHPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEIQERTLGKEH 593
Cdd:NF040586 566 NNLARDLRELGRYAEALD--LLeeALeRYREVLGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDH 643
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1124395687 594 LET--AKTNYCIggIYDSQGDYHKALEHYKKALDIQEKVLGKDHPDVLKSYNLIGTIYREIEDYHNAL 659
Cdd:NF040586 644 PDTlaAALSLAN--DLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAR 709
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
301-505 |
2.97e-22 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 96.61 E-value: 2.97e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 301 KFAQILLDYGDFLKKYARYSQAEDIYKRLIvlseeiygEIHSDTAIAYNNVGCLYDDMGKYTDALKYHFRAQEIreevlg 380
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKAL--------ELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL------ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 381 kaDLQTATSYNNIGLIYNQMVDYPKAMEYFRKALDIyerilgaeNDYTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDe 460
Cdd:COG0457 72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALEL--------DPDDAEALYNLGLALLELGRYDEAIEAYERALELD- 140
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1124395687 461 kilginhPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKEAL 505
Cdd:COG0457 141 -------PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAAL 178
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
318-639 |
1.12e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 100.76 E-value: 1.12e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 318 RYSQA----EDIYKRLivLSEEIYGEIHSDTAIAYNNVGClydDM---GKYTDALKYHFRAQEIREEVLGKADLQTATSY 390
Cdd:NF040586 449 RYEEAreldEDTLERQ--RRVLGLGEDHPHTLMTAGGLGA---DLralGRFREALELDEETLERHRRVFGEDHPRTLRAA 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 391 NNIGLIYNQMVDYPKAMEYFRKALDIYERILGAENDYTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDEKILGI-NHPE 469
Cdd:NF040586 524 NNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVLGGpDHPD 603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 470 TAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKEALGINHPETAKVYNNIGCLYDDIGEYQKGLDnhlLALKIRE---KV 546
Cdd:NF040586 604 TLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARE---LAREVLDryrRV 680
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 547 LGKDHPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEIQERTLGKEH---LeTAKTNYciGGIYDSQGDYHKALEHyKKA 623
Cdd:NF040586 681 LGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHpytL-AAAVNL--ANDLAALGDLDAALGE-EAL 756
|
330 340
....*....|....*....|.
gi 1124395687 624 LDIQE-----KVLGKDHPDVL 639
Cdd:NF040586 757 ERLRRllgedLRAGPDHPDTL 777
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
318-639 |
7.36e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 98.07 E-value: 7.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 318 RYSQA----EDIYKRLivlsEEIYGEIHSDTAIAYNNVGCLYDDMGKYTDALKYHFRAQEIREEVLGKADLQTATSYNNI 393
Cdd:NF040586 493 RFREAleldEETLERH----RRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNL 568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 394 GLIYNQMVDYPKAMEYFRKALDIYERILGAEND-YTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDEKILGINHPET-- 470
Cdd:NF040586 569 ARDLRELGRYAEALDLLEEALERYREVLGGPDHpDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTla 648
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 471 AKLynNIGIVYHDMGDYQKALDYYNKAINVDKEALGINHPETAKVYNNIGCLYDDIGEYQKGLDnhlLALKIREK---VL 547
Cdd:NF040586 649 AAL--SLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARE---LAEAALEGlreRL 723
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 548 GKDHPHTAQSYHNIGVPYDLMGDHQKALHyyLKALEIQERTLGK------EHLET--AKTNYCIggiyDSQGDYHK--AL 617
Cdd:NF040586 724 GPDHPYTLAAAVNLANDLAALGDLDAALG--EEALERLRRLLGEdlragpDHPDTlaCAANLAL----DLRATGRTeeAE 797
|
330 340
....*....|....*....|..
gi 1124395687 618 EHYKKALDIQEKVLGKDHPDVL 639
Cdd:NF040586 798 ELRADTLARLRRVLGPDHPDTV 819
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
318-627 |
2.07e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 89.02 E-value: 2.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 318 RYSQAEDIYKRLIvlseeiygEIHSDTAIAYNNVGCLYDDMGKYTDALKYHFRAQEIreevlgkaDLQTATSYNNIGLIY 397
Cdd:COG2956 23 QPDKAIDLLEEAL--------ELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--------DPDRAEALLELAQDY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 398 NQMVDYPKAMEYFRKALDiyerilgaENDYTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDekilginhPETAKLYNNI 477
Cdd:COG2956 87 LKAGLLDRAEELLEKLLE--------LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG--------PENAHAYCEL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 478 GIVYHDMGDYQKALDYYNKAINVDkealginhPETAKVYNNIGCLYDDIGEYQKgldnhllALKIREKVLGKDhPHTAQS 557
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKLD--------PDCARALLLLAELYLEQGDYEE-------AIAALERALEQD-PDYLPA 214
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 558 YHNIGVPYDLMGDHQKALHYYLKALEIQERTLGKEHLetaktnyciGGIYDSQGDYHKALEHYKKALDIQ 627
Cdd:COG2956 215 LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL---------ADLLERKEGLEAALALLERQLRRH 275
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
485-765 |
5.79e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 88.82 E-value: 5.79e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 485 GDYQKALDYYNKAINVDKEALGINHPETAKVYNNIGCLYDDIGEYQKG--LDNHLLALKIREKVLGKDHPHTAQSYHNIG 562
Cdd:NF040586 406 GDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAreLDEDTLERQRRVLGLGEDHPHTLMTAGGLG 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 563 VpyDLM--GDHQKALHYYLKALEIQERTLGKEHLET--AKTNYCIGgiYDSQGDYHKALEHYKKALDIQEKVLGKDHPDV 638
Cdd:NF040586 486 A--DLRalGRFREALELDEETLERHRRVFGEDHPRTlrAANNLAVS--LRLLGDYREALELDREVLRRRRRVLGPDHPRT 561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 639 LKSYNLIGTIYREIEDYHNALIYRQKEIDYHLRN-SGNNSIKTAIAYNNVGAQYRDLTLYEKAIEYISKAYEIAVKI--- 714
Cdd:NF040586 562 LLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRfgp 641
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1124395687 715 --EDT-TAKASYLNrlgrVYALMGNLEMARNKFKEAIDLLP----EDHPEAVDSQNRL 765
Cdd:NF040586 642 dhPDTlAAALSLAN----DLRALGDADEARELAREVLDRYRrvlgEDHPFTLACRNNL 695
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
442-748 |
6.53e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.78 E-value: 6.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 442 MGEYSKALEYHL-----KALVVDEKILGINhPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDkealginhPETAKVY 516
Cdd:COG2956 9 LGWYFKGLNYLLngqpdKAIDLLEEALELD-PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERD--------PDRAEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 517 NNIGCLYDDIGEYQKgldnhllALKIREKVLGKDhPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEIQErtlgkehlET 596
Cdd:COG2956 80 LELAQDYLKAGLLDR-------AEELLEKLLELD-PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP--------EN 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 597 AKTNYCIGGIYDSQGDYHKALEHYKKALDIqekvlgkdHPDVLKSYNLIGTIYREIEDYHNALIyrqkeidyHLRNSGNN 676
Cdd:COG2956 144 AHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCARALLLLAELYLEQGDYEEAIA--------ALERALEQ 207
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1124395687 677 SIKTAIAYNNVGAQYRDLTLYEKAIEYISKAYEIavkiedtTAKASYLNRLGRVYALMGNLEMARNKFKEAI 748
Cdd:COG2956 208 DPDYLPALPRLAELYEKLGDPEEALELLRKALEL-------DPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
478-754 |
7.64e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 78.62 E-value: 7.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 478 GIVYHDMGDYQKALDYYNKAINVDkealginhPETAKVYNNIGCLYDDIGEYQKgldnhllALKIREKVLGKDhPHTAQS 557
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELD--------PETVEAHLALGNLYRRRGEYDR-------AIRIHQKLLERD-PDRAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 558 YHNIGVPYDLMGDHQKALHYYLKALEIQErtlgkehlETAKTNYCIGGIYDSQGDYHKALEHYKKALDIQekvlgkdhPD 637
Cdd:COG2956 79 LLELAQDYLKAGLLDRAEELLEKLLELDP--------DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG--------PE 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 638 VLKSYNLIGTIYREIEDYHNALIYRQKEIDYHLRNsgnnsiktAIAYNNVGAQYRDLTLYEKAIEYISKAYEIAvkiedt 717
Cdd:COG2956 143 NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC--------ARALLLLAELYLEQGDYEEAIAALERALEQD------ 208
|
250 260 270
....*....|....*....|....*....|....*..
gi 1124395687 718 TAKASYLNRLGRVYALMGNLEMARNKFKEAIDLLPED 754
Cdd:COG2956 209 PDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
427-503 |
2.21e-15 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 71.65 E-value: 2.21e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1124395687 427 YTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDEKILGINHPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKE 503
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
361-585 |
9.53e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 78.11 E-value: 9.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 361 YTDALKYHFRAQEIREEVLGKADLQTATSYNNIGLIYNQMVDYPKAMEYFRKALDIYERILGAENDYtSTAYNNIGCLLE 440
Cdd:COG3914 11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLL-AALLELAALLLQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 441 DMGEYSKALEYHLKALVVDekilginhPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDkealginhPETAKVYNNIG 520
Cdd:COG3914 90 ALGRYEEALALYRRALALN--------PDNAEALFNLGNLLLALGRLEEALAALRRALALN--------PDFAEAYLNLG 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1124395687 521 CLYDDIGEYQKGLDNHLLALKIRekvlgkdhPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEIQ 585
Cdd:COG3914 154 EALRRLGRLEEAIAALRRALELD--------PDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
526-773 |
2.14e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 74.38 E-value: 2.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 526 IGEYQKGLdNHLL------ALKIREKVLgKDHPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEIQErtlgkehlETAKT 599
Cdd:COG2956 9 LGWYFKGL-NYLLngqpdkAIDLLEEAL-ELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP--------DRAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 600 NYCIGGIYDSQGDYHKALEHYKKALDIqekvlgkdHPDVLKSYNLIGTIYREIEDYHNALIYRQKEIDYHLRNsgnnsik 679
Cdd:COG2956 79 LLELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN------- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 680 tAIAYNNVGAQYRDLTLYEKAIEYISKAYEIAvkiedttakasylNRLGRVYALMGNLEMARNKFKEAIDLL---PEDHP 756
Cdd:COG2956 144 -AHAYCELAELYLEQGDYDEAIEALEKALKLD-------------PDCARALLLLAELYLEQGDYEEAIAALeraLEQDP 209
|
250
....*....|....*..
gi 1124395687 757 EAVDSQNRLKEIQTKLH 773
Cdd:COG2956 210 DYLPALPRLAELYEKLG 226
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
597-754 |
4.70e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 72.73 E-value: 4.70e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 597 AKTNYCIGGIYDSQGDYHKALEHYKKALDIQekvlgkdhPDVLKSYNLIGTIYREIEDYHNALIYRQKEIDYHLRNsgnn 676
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELD--------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD---- 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1124395687 677 siktAIAYNNVGAQYRDLTLYEKAIEYISKAYEIAVKiedttaKASYLNRLGRVYALMGNLEMARNKFKEAIDLLPED 754
Cdd:COG0457 76 ----AEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGLALLELGRYDEAIEAYERALELDPDD 143
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
554-629 |
4.90e-14 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 67.80 E-value: 4.90e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1124395687 554 TAQSYHNIGVPYDLMGDHQKALHYYLKALEIQERTLGKEHLETAKTNYCIGGIYDSQGDYHKALEHYKKALDIQEK 629
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
469-545 |
5.46e-14 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 67.41 E-value: 5.46e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1124395687 469 ETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKEALGINHPETAKVYNNIGCLYDDIGEYQKGLDNHLLALKIREK 545
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
511-587 |
2.36e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 65.87 E-value: 2.36e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1124395687 511 ETAKVYNNIGCLYDDIGEYQKGLDNHLLALKIREKVLGKDHPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEIQER 587
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
411-625 |
2.90e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 69.94 E-value: 2.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 411 RKALDIYERILGAENDYTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDEKILGINHPETAKLYNNIGIVYHDMGDYQKA 490
Cdd:COG4785 13 ALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 491 LDYYNKAINVDkealginhPETAKVYNNIGCLYDDIGEYQKGLD--NHLLALKirekvlgkdhPHTAQSYHNIGVPYDLM 568
Cdd:COG4785 93 IADFDQALELD--------PDLAEAYNNRGLAYLLLGDYDAALEdfDRALELD----------PDYAYAYLNRGIALYYL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1124395687 569 GDHQKALHYYLKALEIQE---RTLGKEHLETAKTNYC---------IGGIYDSQGDYHKALEHYKKALD 625
Cdd:COG4785 155 GRYELAIADLEKALELDPndpERALWLYLAERKLDPEkalallledWATAYLLQGDTEEARELFKLALA 223
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
343-419 |
4.80e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 64.72 E-value: 4.80e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1124395687 343 DTAIAYNNVGCLYDDMGKYTDALKYHFRAQEIREEVLGKADLQTATSYNNIGLIYNQMVDYPKAMEYFRKALDIYER 419
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
517-755 |
5.60e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 72.33 E-value: 5.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 517 NNIGCLYDDIGEYQKGLDNHLLALKIREKVlgkdhphtAQSYHNIGVPYDLMGDHQKALHYYLKALEIQERTLGKEHLET 596
Cdd:COG3914 5 ALLALAALAAAALLAAAAAAELALAAELEA--------AALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 597 AKTNYCI-GGIYDSQGDYHKALEHYKKALDIQekvlgkdhPDVLKSYNLIGTIYREIEDYHNALIYRQKEIDYHLRNsgn 675
Cdd:COG3914 77 LAALLELaALLLQALGRYEEALALYRRALALN--------PDNAEALFNLGNLLLALGRLEEALAALRRALALNPDF--- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 676 nsiktAIAYNNVGAQYRDLTLYEKAIEyiskAYEIAVKIEDTTAKAsyLNRLGRVYALMGNLEMARNKFKEAIDLLPEDH 755
Cdd:COG3914 146 -----AEAYLNLGEALRRLGRLEEAIA----ALRRALELDPDNAEA--LNNLGNALQDLGRLEEAIAAYRRALELDPDNA 214
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
302-505 |
6.45e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 69.27 E-value: 6.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 302 FAQILLDYGDFLKKYARYSQAEDIYKRLIvlseeiygEIHSDTAIAYNNVGCLYDDMGKYTDALKYHFRAQEIREEVlgk 381
Cdd:COG0457 41 DAEALYNLGLAYLRLGRYEEALADYEQAL--------ELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD--- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 382 adlqtATSYNNIGLIYNQMVDYPKAMEYFRKALDIyerilgaeNDYTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDEK 461
Cdd:COG0457 110 -----AEALYNLGLALLELGRYDEAIEAYERALEL--------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALA 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1124395687 462 ILGINHPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKEAL 505
Cdd:COG0457 177 ALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
385-456 |
1.85e-12 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 63.18 E-value: 1.85e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1124395687 385 QTATSYNNIGLIYNQMVDYPKAMEYFRKALDIYERILGAENDYTSTAYNNIGCLLEDMGEYSKALEYHLKAL 456
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
595-661 |
3.48e-12 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 62.40 E-value: 3.48e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1124395687 595 ETAKTNYCIGGIYDSQGDYHKALEHYKKALDIQEKVLGKDHPDVLKSYNLIGTIYREIEDYHNALIY 661
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALEL 67
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
396-505 |
5.27e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.80 E-value: 5.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 396 IYNQMVDYPKAMEYFRKALDIyerilgaeNDYTSTAYNNIGCLLEDMGEYSKALEYHlKALVVDekilginhPETAKLYN 475
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIALE-KALKLD--------PNNAEALL 63
|
90 100 110
....*....|....*....|....*....|
gi 1124395687 476 NIGIVYHDMGDYQKALDYYNKAINVDKEAL 505
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
377-583 |
2.37e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 58.39 E-value: 2.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 377 EVLGKADLQTATSYNNIGLIYNQMVDYPKAMEYFRKALDIYERILGAENDytSTAYNNIGCLLEDMGEYSKALEYHLKAL 456
Cdd:COG4785 23 AILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDL--AQLYYERGVAYDSLGDYDLAIADFDQAL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 457 VVDekilginhPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDkealginhPETAKVYNNIGCLYDDIGEYQKGLDNH 536
Cdd:COG4785 101 ELD--------PDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD--------PDYAYAYLNRGIALYYLGRYELAIADL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1124395687 537 LLALKIREK----------VLGKDHPHTAQSY--HNIGVPYDLMGDHQKALHYYLKALE 583
Cdd:COG4785 165 EKALELDPNdperalwlylAERKLDPEKALALllEDWATAYLLQGDTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
385-542 |
2.76e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.97 E-value: 2.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 385 QTATSYNNIGLIYNQMVDYPKAMEYFRKALDiyerilgaENDYTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDekilg 464
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALE--------LDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD----- 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1124395687 465 inhPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDkealginhPETAKVYNNIGCLYDDIGEYQKGLDNHLLALKI 542
Cdd:COG4783 69 ---PDEPEARLNLGLALLKAGDYDEALALLEKALKLD--------PEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
283-498 |
4.91e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 57.23 E-value: 4.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 283 NLYAQADEMSKVAEYDKNKFAQILLDYGDFLKKYARYSQAEDIYKRLIVLSEEIYGEIHSDTAIAYNNVGCLYDDMGKYT 362
Cdd:COG4785 11 ALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYD 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 363 DALkYHF-RAQEIREEvlgkadlqTATSYNNIGLIYNQMVDYPKAMEYFRKALDIyerilgaeNDYTSTAYNNIGCLLED 441
Cdd:COG4785 91 LAI-ADFdQALELDPD--------LAEAYNNRGLAYLLLGDYDAALEDFDRALEL--------DPDYAYAYLNRGIALYY 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1124395687 442 MGEYSKALEYHLKALVVDEK----------ILGINHPETAK--LYNNIGIVYHDMGDYQKALDYYNKAI 498
Cdd:COG4785 154 LGRYELAIADLEKALELDPNdperalwlylAERKLDPEKALalLLEDWATAYLLQGDTEEARELFKLAL 222
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
680-753 |
8.71e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 52.77 E-value: 8.71e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1124395687 680 TAIAYNNVGAQYRDLTLYEKAIEYISKAYEIAVKI--EDTTAKASYLNRLGRVYALMGNLEMARNKFKEAIDLLPE 753
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
480-589 |
8.98e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.25 E-value: 8.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 480 VYHDMGDYQKALDYYNKAINVDkealginhPETAKVYNNIGCLYDDIGEYQKGLDnHLLALKIrekvlgkdHPHTAQSYH 559
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELD--------PDNADALNNLGLLLLEQGRYDEAIA-LEKALKL--------DPNNAEALL 63
|
90 100 110
....*....|....*....|....*....|
gi 1124395687 560 NIGVPYDLMGDHQKALHYYLKALEIQERTL 589
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
342-503 |
9.59e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.73 E-value: 9.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 342 SDTAIAYNNVGCLYDDMGKYTDALKYHfraqeirEEVLgKADLQTATSYNNIGLIYNQMVDYPKAMEYFRKALDIyeril 421
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALL-------EKAL-ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL----- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 422 gaeNDYTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDekilginhPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVD 501
Cdd:COG4783 68 ---DPDEPEARLNLGLALLKAGDYDEALALLEKALKLD--------PEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
..
gi 1124395687 502 KE 503
Cdd:COG4783 137 PD 138
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
431-585 |
1.03e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.73 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 431 AYNNIGCLLEDMGEYSKALEYHLKALVVDekilginhPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDkealginhP 510
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELD--------PDNPEAFALLGEILLQLGDLDEAIVLLHEALELD--------P 69
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1124395687 511 ETAKVYNNIGCLYDDIGEYQKgldnhllALKIREKVLgKDHPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEIQ 585
Cdd:COG4783 70 DEPEARLNLGLALLKAGDYDE-------ALALLEKAL-KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
636-755 |
1.05e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 53.86 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 636 PDVLKSYNLIGTIYREIEDYHNALIYRQKEIDYHLRNsgnnsiktAIAYNNVGAQYRDLTLYEKAIEYiskaYEIAVKIE 715
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD--------AEALYNLGLAYLRLGRYEEALAD----YEQALELD 72
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1124395687 716 DTTAKAsyLNRLGRVYALMGNLEMARNKFKEAIDLLPEDH 755
Cdd:COG0457 73 PDDAEA--LNNLGLALQALGRYEEALEDYDKALELDPDDA 110
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
470-511 |
1.40e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 48.27 E-value: 1.40e-07
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1124395687 470 TAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKEALGINHPE 511
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
386-424 |
1.53e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 48.27 E-value: 1.53e-07
10 20 30
....*....|....*....|....*....|....*....
gi 1124395687 386 TATSYNNIGLIYNQMVDYPKAMEYFRKALDIYERILGAE 424
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPD 39
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
382-502 |
2.77e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 50.73 E-value: 2.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 382 ADLQTATSYNNIGLIYNQMVDYPKAMEYFRKALDIyerilgaeNDYTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDek 461
Cdd:COG5010 49 KLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL--------DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS-- 118
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1124395687 462 ilginhPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDK 502
Cdd:COG5010 119 ------PDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
303-377 |
2.86e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 48.54 E-value: 2.86e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1124395687 303 AQILLDYGDFLKKYARYSQAEDIYKRLIVLSEEIYGEIHSDTAIAYNNVGCLYDDMGKYTDALKYHFRAQEIREE 377
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
603-637 |
3.48e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 47.11 E-value: 3.48e-07
10 20 30
....*....|....*....|....*....|....*
gi 1124395687 603 IGGIYDSQGDYHKALEHYKKALDIQEKVLGKDHPD 637
Cdd:pfam13374 8 LANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
443-528 |
4.21e-07 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 50.44 E-value: 4.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 443 GEYSKALEYHLKALVVDEKilGINHPETakLYNnIGIVYHDMGDYQKALDYYNKAINvdkealgiNHPETAKVYNNIGCL 522
Cdd:PRK02603 49 GEYAEALENYEEALKLEED--PNDRSYI--LYN-MGIIYASNGEHDKALEYYHQALE--------LNPKQPSALNNIAVI 115
|
....*.
gi 1124395687 523 YDDIGE 528
Cdd:PRK02603 116 YHKRGE 121
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
381-503 |
6.27e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.23 E-value: 6.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 381 KADLQTATSYNNIGLIYNQMVDYPKAMEYFRKALDIyerilgaeNDYTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDe 460
Cdd:COG4235 11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL--------DPDNADALLDLAEALLAAGDTEEAEELLERALALD- 81
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1124395687 461 kilginhPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKE 503
Cdd:COG4235 82 -------PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
428-469 |
6.34e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 46.34 E-value: 6.34e-07
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1124395687 428 TSTAYNNIGCLLEDMGEYSKALEYHLKALVVDEKILGINHPE 469
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
554-595 |
7.06e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 46.34 E-value: 7.06e-07
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1124395687 554 TAQSYHNIGVPYDLMGDHQKALHYYLKALEIQERTLGKEHLE 595
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
467-584 |
7.53e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.85 E-value: 7.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 467 HPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDkealginhPETAKVYNNIGCLYDDIGEYQKgldnhllALKIREKV 546
Cdd:COG4235 13 NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEE-------AEELLERA 77
|
90 100 110
....*....|....*....|....*....|....*...
gi 1124395687 547 LGKDhPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEI 584
Cdd:COG4235 78 LALD-PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
402-531 |
1.17e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.19 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 402 DYPKAMEYFRKALDIYERILGAENDYTSTAYNNIGCLLEDMGEYSKALEYHLKALVVDekilginhPETAKLYNNIGIVY 481
Cdd:COG5010 27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD--------PNNPELYYNLALLY 98
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1124395687 482 HDMGDYQKALDYYNKAINVDkealginhPETAKVYNNIGCLYDDIGEYQK 531
Cdd:COG5010 99 SRSGDKDEAKEYYEKALALS--------PDNPNAYSNLAALLLSLGQDDE 140
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
546-749 |
1.66e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 49.91 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 546 VLGKDHPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEIQERTLgkEHLETAKTNYCIGGIYDSQGDYHKALEHYKKALD 625
Cdd:COG4785 24 ILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAL--ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 626 IQekvlgkdhPDVLKSYNLIGTIYREIEDYHNALiyrqKEIDYHLRNSGNNsiktAIAYNNVGAQYRDLTLYEKAIEYIS 705
Cdd:COG4785 102 LD--------PDLAEAYNNRGLAYLLLGDYDAAL----EDFDRALELDPDY----AYAYLNRGIALYYLGRYELAIADLE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1124395687 706 KAYEIAV--------------KIEDTTAKASYLNRLGRVYALMGNLEMARNKFKEAID 749
Cdd:COG4785 166 KALELDPndperalwlylaerKLDPEKALALLLEDWATAYLLQGDTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
303-456 |
2.83e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.49 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 303 AQILLDYGDFLKKYARYSQAEDIYKRLIvlseeiygEIHSDTAIAYNNVGCLYDDMGKYTDALKYhfraqeIREEVlgKA 382
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKAL--------ELDPDNPEAFALLGEILLQLGDLDEAIVL------LHEAL--EL 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1124395687 383 DLQTATSYNNIGLIYNQMVDYPKAMEYFRKALDIYERilgaendyTSTAYNNIGCLLEDMGEYSKALEYHLKAL 456
Cdd:COG4783 68 DPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE--------HPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
471-503 |
3.13e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 44.36 E-value: 3.13e-06
10 20 30
....*....|....*....|....*....|...
gi 1124395687 471 AKLYNNIGIVYHDMGDYQKALDYYNKAINVDKE 503
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
512-553 |
3.78e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 44.03 E-value: 3.78e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1124395687 512 TAKVYNNIGCLYDDIGEYQKGLDNHLLALKIREKVLGKDHPH 553
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
603-754 |
4.71e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.72 E-value: 4.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 603 IGGIYDSQGDYHKALEHYKKALDIQekvlgkdhPDVLKSYNLIGTIYREIEDYHNALIYRQKEIDYHLRNsgnnsiktAI 682
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELD--------PDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE--------PE 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1124395687 683 AYNNVGAQYRDLTLYEKAIEYISKAyeiavkIEDTTAKASYLNRLGRVYALMGNLEMARNKFKEAIDLLPED 754
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKA------LKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
471-501 |
5.26e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 43.56 E-value: 5.26e-06
10 20 30
....*....|....*....|....*....|.
gi 1124395687 471 AKLYNNIGIVYHDMGDYQKALDYYNKAINVD 501
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
318-421 |
5.78e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.16 E-value: 5.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 318 RYSQAEDIYKRLIvlseeiygEIHSDTAIAYNNVGCLYDDMGKYTDALKYHfRAQEIreevlgkaDLQTATSYNNIGLIY 397
Cdd:COG3063 7 DLEEAEEYYEKAL--------ELDPDNADALNNLGLLLLEQGRYDEAIALE-KALKL--------DPNNAEALLNLAELL 69
|
90 100
....*....|....*....|....
gi 1124395687 398 NQMVDYPKAMEYFRKALDIYERIL 421
Cdd:COG3063 70 LELGDYDEALAYLERALELDPSAL 93
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
478-748 |
1.17e-05 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 48.11 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 478 GIVY-HDMGDYQKALDYYNKAI------NVDK---EALGInHPETAKVY---NNIGCLYDDI-GEYQKGLDNHLLALKIR 543
Cdd:cd24145 14 ALYYeSDKPDPQKALKYYKEALeqadelGMDPfsdEVTGI-RIKIAEMLeklGMYKAAYEVLeRLYLDCLRWTLKDDESE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 544 EKVLGKDHPHTAQSYHNIGVPYDlMGDHQKALHYYLKALEIQERTLGKEHLETAKTNYC--IGGIYDSQGDYHKALEHYK 621
Cdd:cd24145 93 RGHLIKRDLRISIKLGELNKDSE-LGKWELRERLLKKAVEILLKLGELWMSPSEVGAFLeeLATAYDLYGRFCLALPLYM 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 622 KALDIQEKVLGKDHpdvlksyNLIGTIYREIEDYHNALIYRQKEIDYHLRNSGNNSIKTAIAYnnvgaqyrdltlYEKAI 701
Cdd:cd24145 172 QALSLKGQILLSQA-------NCHSLVLMNNEAAELALHALRKPLSSTLIEASRLPQKSRDQL------------LEAAL 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1124395687 702 EYISKAYEIAVKIE--------DTTAKASYLNrLGRVYALMGNLEMARNKFKEAI 748
Cdd:cd24145 233 KWAQKALDVAKSIKpkdrdpecDQACALALYN-LGVIAEMLGNLDEARKLYKEAI 286
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
361-759 |
1.66e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.54 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 361 YTDALkYHFRAQEIREEVLGKAD-LQTATSYNNI----GLIYNQMVDYPKAMEYFRKALDIYE------RILGA---END 426
Cdd:TIGR02917 265 YLKAL-VDFQKKNYEDARETLQDaLKSAPEYLPAlllaGASEYQLGNLEQAYQYLNQILKYAPnshqarRLLASiqlRLG 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 427 YTSTAYNNIGCLLE-----------------DMGEYSKALEYHLKAlvvdekilGINHPETAKLYNNIGIVYHDMGDYQK 489
Cdd:TIGR02917 344 RVDEAIATLSPALGldpddpaalsllgeaylALGDFEKAAEYLAKA--------TELDPENAAARTQLGISKLSQGDPSE 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 490 ALDYYNKAINVDkealginhPETAKVYNNIGCLYDDIGEYQKgldnhllALKIREKvLGKDHPHTAQSYHNIGVPYDLMG 569
Cdd:TIGR02917 416 AIADLETAAQLD--------PELGRADLLLILSYLRSGQFDK-------ALAAAKK-LEKKQPDNASLHNLLGAIYLGKG 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 570 DHQKALHYYLKALEIQErtlgkehletaktnyciggiydsqgDYHKALeHYKKALDIQEKvlgkdHPDVLKSYnligtiy 649
Cdd:TIGR02917 480 DLAKAREAFEKALSIEP-------------------------DFFPAA-ANLARIDIQEG-----NPDDAIQR------- 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 650 reiedYHNALIYRQKEIDYHLR------NSGNNS-----IKTAIAYNNvgaqyRDLTLYEKAIEY------ISKAYEIAV 712
Cdd:TIGR02917 522 -----FEKVLTIDPKNLRAILAlaglylRTGNEEeavawLEKAAELNP-----QEIEPALALAQYylgkgqLKKALAILN 591
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1124395687 713 KIEDTTAKA-SYLNRLGRVYALMGNLEMARNKFKEAIDLLPeDHPEAV 759
Cdd:TIGR02917 592 EAADAAPDSpEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALAL 638
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
569-649 |
1.75e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 45.82 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 569 GDHQKALHYYLKALEIQERTLGKehletAKTNYCIGGIYDSQGDYHKALEHYKKALDIQEKVlgkdhPDVLKSynlIGTI 648
Cdd:PRK02603 49 GEYAEALENYEEALKLEEDPNDR-----SYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-----PSALNN---IAVI 115
|
.
gi 1124395687 649 Y 649
Cdd:PRK02603 116 Y 116
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
538-683 |
2.20e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 538 LALKIREKVlgKDHPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEIQERTLgkehleTAKTNYciGGIYDSQGDYHKAL 617
Cdd:COG4235 2 AIARLRQAL--AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNA------DALLDL--AEALLAAGDTEEAE 71
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1124395687 618 EHYKKALDIQekvlgkdhPDVLKSYNLIGTIYREIEDYHNALIYRQKEIDYHLRNSGNNSIKTAIA 683
Cdd:COG4235 72 ELLERALALD--------PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
387-736 |
2.94e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.77 E-value: 2.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 387 ATSYNNIGLIYNQMVDYPKAMEYFRKALDIyerilgAENDYTSTAYnnigclLEDMGEYSKALEyhlKALVVDEKILGIn 466
Cdd:TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSI------EPDFFPAAAN------LARIDIQEGNPD---DAIQRFEKVLTI- 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 467 HPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKEALGinhpetakvynnigcLYDDIGEYQKGLDNHLLALKIREKV 546
Cdd:TIGR02917 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE---------------PALALAQYYLGKGQLKKALAILNEA 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 547 LgKDHPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEIQERTlGKEHLETAKtnyciggIYDSQGDYHKALEHYKKALDI 626
Cdd:TIGR02917 594 A-DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS-ALALLLLAD-------AYAVMKNYAKAITSLKRALEL 664
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 627 qekvlgkdHPDVLKSYNLIGTIYREIEDYHNAL-IYRQKEidyhlrnsgNNSIKTAIAYNNVGAQYRDLTLYEKAIEYIS 705
Cdd:TIGR02917 665 --------KPDNTEAQIGLAQLLLAAKRTESAKkIAKSLQ---------KQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727
|
330 340 350
....*....|....*....|....*....|.
gi 1124395687 706 KAYEIAvkiedttAKASYLNRLGRVYALMGN 736
Cdd:TIGR02917 728 KALKRA-------PSSQNAIKLHRALLASGN 751
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
606-711 |
3.88e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.85 E-value: 3.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 606 IYDSQGDYHKALEHYKKALDIqekvlgkdHPDVLKSYNLIGTIYREIEDYHNALIYRQkeidyHLRNSGNNsiktAIAYN 685
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNN----AEALL 63
|
90 100
....*....|....*....|....*.
gi 1124395687 686 NVGAQYRDLTLYEKAIEYISKAYEIA 711
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALELD 89
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
511-664 |
3.97e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.03 E-value: 3.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 511 ETAKVYNNIGCLYDDIGEYQKgldnhllALKIREKVLgKDHPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEIQertlg 590
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDE-------AEALLEKAL-ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD----- 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1124395687 591 KEHLETAktnYCIGGIYDSQGDYHKALEHYKKALDIQEkvlgkDHPDVlksYNLIGTIYREIEDYHNALIYRQK 664
Cdd:COG4783 69 PDEPEAR---LNLGLALLKAGDYDEALALLEKALKLDP-----EHPEA---YLRLARAYRALGRPDEAIAALEK 131
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
402-498 |
5.04e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 44.66 E-value: 5.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 402 DYPKAMEYFRKALDIYERilgaENDYTSTAYNnIGCLLEDMGEYSKALEYHLKALVvdekilgiNHPETAKLYNNIGIVY 481
Cdd:PRK02603 50 EYAEALENYEEALKLEED----PNDRSYILYN-MGIIYASNGEHDKALEYYHQALE--------LNPKQPSALNNIAVIY 116
|
90 100 110
....*....|....*....|....*....|.
gi 1124395687 482 HDMGD--------------YQKALDYYNKAI 498
Cdd:PRK02603 117 HKRGEkaeeagdqdeaealFDKAAEYWKQAI 147
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
569-753 |
7.47e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 46.39 E-value: 7.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 569 GDHQKALHYYLKAleiqertlGKEhletAKtnyciggiydSQGDYHKALEHYKKALDIQEKVLGKDHPDVLksYNLIGTI 648
Cdd:COG3899 699 GERDRAARLLLRA--------ARR----AL----------ARGAYAEALRYLERALELLPPDPEEEYRLAL--LLELAEA 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 649 YREIEDYHNALIY----RQKEIDYHL--RNSGnNSIKTAIAYNNVGAQYRDltLYEKAIEYISKAYEIAVKIEDTTAKAS 722
Cdd:COG3899 755 LYLAGRFEEAEALleraLAARALAALaaLRHG-NPPASARAYANLGLLLLG--DYEEAYEFGELALALAERLGDRRLEAR 831
|
170 180 190
....*....|....*....|....*....|.
gi 1124395687 723 YLNRLGRVYALMGNLEMARNKFKEAIDLLPE 753
Cdd:COG3899 832 ALFNLGFILHWLGPLREALELLREALEAGLE 862
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
345-459 |
8.03e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.80 E-value: 8.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 345 AIAYNNVGCLYDDMGKYTDALKYHFRAQEIREEvlgkadlqTATSYNNIGLIYNQMVDYPKAMEYFRKALDIyerilgae 424
Cdd:COG5010 54 FAIESPSDNLYNKLGDFEESLALLEQALQLDPN--------NPELYYNLALLYSRSGDKDEAKEYYEKALAL-------- 117
|
90 100 110
....*....|....*....|....*....|....*
gi 1124395687 425 NDYTSTAYNNIGCLLEDMGEYSKALEYHLKALVVD 459
Cdd:COG5010 118 SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
394-752 |
8.26e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.23 E-value: 8.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 394 GLIYNQMVDYPKAMEYFRKAldiyeRILGAENdytSTAYNNIGCLLEDMGEYSKALEYHLKALVVD-------------- 459
Cdd:TIGR02917 370 GEAYLALGDFEKAAEYLAKA-----TELDPEN---AAARTQLGISKLSQGDPSEAIADLETAAQLDpelgradlllilsy 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 460 ------EKILGI------NHPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKE-----------ALGINHPETAKVY 516
Cdd:TIGR02917 442 lrsgqfDKALAAakklekKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDffpaaanlariDIQEGNPDDAIQR 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 517 nnigclYDDI-GEYQKGLDNHLL--ALKIR----EKVLG------KDHPHTAQSYHNIGVPYDLMGDHQKALHYYLKALE 583
Cdd:TIGR02917 522 ------FEKVlTIDPKNLRAILAlaGLYLRtgneEEAVAwlekaaELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 584 IQERTlgKEHLETaktnycIGGIYDSQGDYHKALEHYKKALDIQekvlgkdhPDVLKSYNLIGTIYREIEDYHNALIYRQ 663
Cdd:TIGR02917 596 AAPDS--PEAWLM------LGRAQLAAGDLNKAVSSFKKLLALQ--------PDSALALLLLADAYAVMKNYAKAITSLK 659
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 664 KEIDYHlrnsgnnsiktaiaYNNVGAQYRdLTLYEKAIEYISKAYEIAVKIEDTTAKASYLNRL-GRVYALMGNLEMARN 742
Cdd:TIGR02917 660 RALELK--------------PDNTEAQIG-LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELeGDLYLRQKDYPAAIQ 724
|
410
....*....|
gi 1124395687 743 KFKEAIDLLP 752
Cdd:TIGR02917 725 AYRKALKRAP 734
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
344-381 |
1.79e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 39.41 E-value: 1.79e-04
10 20 30
....*....|....*....|....*....|....*...
gi 1124395687 344 TAIAYNNVGCLYDDMGKYTDALKYHFRAQEIREEVLGK 381
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGP 38
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
181-375 |
1.95e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.98 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 181 EYQQILFDTAKRIAQLQGERITERMRRAMDAFNDGKVREANIILDEAEADARRNLEDYKQSkeITDLKRQAVIN-SIEEL 259
Cdd:COG3914 37 LAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEA--LALYRRALALNpDNAEA 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 260 LLKTSTIMADAsipieERIESTENLYAQADEMskvaeydKNKFAQILLDYGDFLKKYARYSQAEDIYKRLIvlseeiygE 339
Cdd:COG3914 115 LFNLGNLLLAL-----GRLEEALAALRRALAL-------NPDFAEAYLNLGEALRRLGRLEEAIAALRRAL--------E 174
|
170 180 190
....*....|....*....|....*....|....*.
gi 1124395687 340 IHSDTAIAYNNVGCLYDDMGKYTDALKYHFRAQEIR 375
Cdd:COG3914 175 LDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
606-754 |
2.21e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.37 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 606 IYDSQGDYHKALEHYKKALDIQEKVLGKD-----HPDVLKSYNLIGTIYREIEDYHNALIyrqkeiDYhlrnsgNNSIK- 679
Cdd:COG4785 35 LALAIALADLALALAAAALAAAALAAERIdralaLPDLAQLYYERGVAYDSLGDYDLAIA------DF------DQALEl 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1124395687 680 ---TAIAYNNVGAQYRDLTLYEKAIEYISKAYEIavkieDTTAKASYLNRlGRVYALMGNLEMARNKFKEAIDLLPED 754
Cdd:COG4785 103 dpdLAEAYNNRGLAYLLLGDYDAALEDFDRALEL-----DPDYAYAYLNR-GIALYYLGRYELAIADLEKALELDPND 174
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
359-498 |
2.66e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 42.30 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 359 GKYTDALKYHFRAQEIREEVLGKadlqtatSY--NNIGLIYNQMVDYPKAMEYFRKALDIyerilgaeNDYTSTAYNNIg 436
Cdd:CHL00033 49 GEYAEALQNYYEAMRLEIDPYDR-------SYilYNIGLIHTSNGEHTKALEYYFQALER--------NPFLPQALNNM- 112
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1124395687 437 clledmgeyskALEYHLKALVVDEKilgiNHPETAKLYnnigivyhdmgdYQKALDYYNKAI 498
Cdd:CHL00033 113 -----------AVICHYRGEQAIEQ----GDSEIAEAW------------FDQAAEYWKQAI 147
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
527-638 |
3.25e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 41.97 E-value: 3.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 527 GEYQKGLDNHLLALKIREkvlgkDHPHTAQSYHNIGVPYDLMGDHQKALHYYLKALEIQERtlgkehLETAKTNycIGGI 606
Cdd:PRK02603 49 GEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK------QPSALNN--IAVI 115
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1124395687 607 YDSQGD--------------YHKALEHYKKA--------LDIQE--KVLGKDHPDV 638
Cdd:PRK02603 116 YHKRGEkaeeagdqdeaealFDKAAEYWKQAirlapnnyIEAQNwlKTTGRSNIDV 171
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
485-626 |
3.57e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 44.08 E-value: 3.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 485 GDYQKALDYYNKAINVDKEALGINHP-----ETAKVYNNIGCLYDDIGEYQKGLDNHLLALKIREKVlgKDHPHTAQSYH 559
Cdd:COG3899 719 GAYAEALRYLERALELLPPDPEEEYRlalllELAEALYLAGRFEEAEALLERALAARALAALAALRH--GNPPASARAYA 796
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1124395687 560 NIGVPydLMGDHQKALHYYLKALEIQERTLGKEHLetAKTNYCIGGIYDSQGDYHKALEHYKKALDI 626
Cdd:COG3899 797 NLGLL--LLGDYEEAYEFGELALALAERLGDRRLE--ARALFNLGFILHWLGPLREALELLREALEA 859
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
615-759 |
4.58e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 615 KALEHYKKALdiqekvlgKDHPDVLKSYNLIGTIYREIEDYHNALIYRQKeidyHLRNSGNNsiktAIAYNNVGAQYRDL 694
Cdd:COG4235 1 EAIARLRQAL--------AANPNDAEGWLLLGRAYLRLGRYDEALAAYEK----ALRLDPDN----ADALLDLAEALLAA 64
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1124395687 695 TLYEKAIEyiskAYEIAVKIEDTTAKASYLnrLGRVYALMGNLEMARNKFKEAIDLLPEDHPEAV 759
Cdd:COG4235 65 GDTEEAEE----LLERALALDPDNPEALYL--LGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
486-627 |
6.59e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.10 E-value: 6.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 486 DYQKALDYYNKAINVDKEALGINHPETAKVYNNIGCLYDDIGEYQKGLDNHLLALKIrekvlgkdHPHTAQSYHNIGVPY 565
Cdd:COG5010 27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL--------DPNNPELYYNLALLY 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1124395687 566 DLMGDHQKALHYYLKALEIQErtlgkehlETAKTNYCIGGIYDSQGDYHKALEHYKKALDIQ 627
Cdd:COG5010 99 SRSGDKDEAKEYYEKALALSP--------DNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
522-631 |
8.47e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.00 E-value: 8.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 522 LYDDIGEYQKGLDNHLLALKIrekvlgkdHPHTAQSYHNIGVPYDLMGDHQKALHYyLKALEIQErtlgkehlETAKTNY 601
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDP--------NNAEALL 63
|
90 100 110
....*....|....*....|....*....|
gi 1124395687 602 CIGGIYDSQGDYHKALEHYKKALDIQEKVL 631
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
555-626 |
8.63e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 40.76 E-value: 8.63e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1124395687 555 AQSYHNIGVPYDLMGDHQKALHYYLKALEIQERTLGKEHletakTNYCIGGIYDSQGDYHKALEHYKKALDI 626
Cdd:CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSY-----ILYNIGLIHTSNGEHTKALEYYFQALER 101
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
471-503 |
1.18e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.12 E-value: 1.18e-03
10 20 30
....*....|....*....|....*....|...
gi 1124395687 471 AKLYNNIGIVYHDMGDYQKALDYYNKAINVDKE 503
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
387-418 |
1.43e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 1.43e-03
10 20 30
....*....|....*....|....*....|..
gi 1124395687 387 ATSYNNIGLIYNQMVDYPKAMEYFRKALDIYE 418
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
597-629 |
1.57e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 1.57e-03
10 20 30
....*....|....*....|....*....|...
gi 1124395687 597 AKTNYCIGGIYDSQGDYHKALEHYKKALDIQEK 629
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
471-503 |
1.72e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 36.61 E-value: 1.72e-03
10 20 30
....*....|....*....|....*....|...
gi 1124395687 471 AKLYNNIGIVYHDMGDYQKALDYYNKAINVDKE 503
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
387-416 |
2.15e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.27 E-value: 2.15e-03
10 20 30
....*....|....*....|....*....|
gi 1124395687 387 ATSYNNIGLIYNQMVDYPKAMEYFRKALDI 416
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALEL 30
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
319-507 |
2.31e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 41.51 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 319 YSQAEDIYKRLIVLseeiyGEIHSDTAIAYNNVGCLYDDMGKYTDALKYHFRAQEIreevlgkaDLQTATSYNNIGLIYN 398
Cdd:TIGR00990 310 YEEAARAFEKALDL-----GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNL 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 399 QMVDYPKAMEYFRKAL-------DIYER------ILG----AENDYTST---------AYNNIGCLLEDMGEYSKALEYH 452
Cdd:TIGR00990 377 ELGDPDKAEEDFDKALklnsedpDIYYHraqlhfIKGefaqAGKDYQKSidldpdfifSHIQLGVTQYKEGSIASSMATF 456
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1124395687 453 LKALVvdekilgiNHPETAKLYNNIGIVYHDMGDYQKALDYYNKAINVDKEALGI 507
Cdd:TIGR00990 457 RRCKK--------NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM 503
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
597-629 |
3.00e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 3.00e-03
10 20 30
....*....|....*....|....*....|...
gi 1124395687 597 AKTNYCIGGIYDSQGDYHKALEHYKKALDIQEK 629
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
676-768 |
4.35e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 4.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 676 NSIKTAIAYNNVGAQYRDLTLYEKAIEYISKAYEIAvkiEDTTAKASYLNRLGRVYALMGNLEMARNKFKEAIDLLPeDH 755
Cdd:COG1729 25 NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY---PDSPKAPDALLKLGLSYLELGDYDKARATLEELIKKYP-DS 100
|
90
....*....|...
gi 1124395687 756 PEAVDSQNRLKEI 768
Cdd:COG1729 101 EAAKEARARLARL 113
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
555-586 |
4.71e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.09 E-value: 4.71e-03
10 20 30
....*....|....*....|....*....|..
gi 1124395687 555 AQSYHNIGVPYDLMGDHQKALHYYLKALEIQE 586
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
431-461 |
4.72e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 4.72e-03
10 20 30
....*....|....*....|....*....|.
gi 1124395687 431 AYNNIGCLLEDMGEYSKALEYHLKALVVDEK 461
Cdd:smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
593-759 |
6.66e-03 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 38.86 E-value: 6.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 593 HLETAKTNYCIGGIYDSQGDYHKALEHYKKALDIQekvlgkdhPDVLKSYNLIGTIYREIEDYHNALIYRQKEIdyhlrN 672
Cdd:TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD--------PDDYLAYLALALYYQQLGELEKAEDSFRRAL-----T 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 673 SGNNSiktAIAYNNVGAQYRDLTLYEKAIEYISKAyeIAVKIEDTTAKaSYLNrLGRVYALMGNLEMARNKFKEAIDLLP 752
Cdd:TIGR02521 94 LNPNN---GDVLNNYGTFLCQQGKYEQAMQQFEQA--IEDPLYPQPAR-SLEN-AGLCALKAGDFDKAEKYLTRALQIDP 166
|
....*..
gi 1124395687 753 eDHPEAV 759
Cdd:TIGR02521 167 -QRPESL 172
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
359-447 |
7.84e-03 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 38.11 E-value: 7.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124395687 359 GKYTDALKYHfraqeirEEVLGKADLQTATSY--NNIGLIYNQMVDYPKAMEYFRKALDiyerilgaENDYTSTAYNNIG 436
Cdd:PRK02603 49 GEYAEALENY-------EEALKLEEDPNDRSYilYNMGIIYASNGEHDKALEYYHQALE--------LNPKQPSALNNIA 113
|
90
....*....|.
gi 1124395687 437 CLLEDMGEYSK 447
Cdd:PRK02603 114 VIYHKRGEKAE 124
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
695-757 |
7.96e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 39.15 E-value: 7.96e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1124395687 695 TLYEKAIEYIS--------KAYEIAVKIEDTTAKAsyLNRLGRVYALMGNLEMARNKFKEAIDLLPEDHPE 757
Cdd:cd24142 2 ELLEKAEELLDqgnfelalKFLQRALELEPNNVEA--LELLGEILLELGDVEEAREVLLRAIELDPDGGYE 70
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
431-461 |
9.30e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 34.32 E-value: 9.30e-03
10 20 30
....*....|....*....|....*....|.
gi 1124395687 431 AYNNIGCLLEDMGEYSKALEYHLKALVVDEK 461
Cdd:pfam00515 3 ALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| |
