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Conserved domains on  [gi|1141153512|ref|WP_076919407|]
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MULTISPECIES: protein translocase subunit SecF [unclassified Pseudoalteromonas]

Protein Classification

protein translocase subunit SecF( domain architecture ID 11417410)

protein translocase subunit SecF is part of the Sec protein translocase complex; SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA

Gene Ontology:  GO:0015450|GO:0043952
TCDB:  2.A.6.4

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
SecF COG0341
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ...
 6-295 1.18e-140

Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 440110 [Multi-domain]  Cd Length: 291  Bit Score: 398.66  E-value: 1.18e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512   6 LGGKTLRFMSLRKVAMGFSTLLIIASLASLFVKGLNFGLDFTGGTAVEVGFSQPADLKKVRNVLAENDFADASVQLFGSS 85
Cdd:COG0341     4 PGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFGSD 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  86 QEILVRLAPRGDDVKAEVigNQVIAALKQADDSVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVG 165
Cdd:COG0341    84 NDVLIRTPPLDGESAEEV--EKVRAALKEAFGDVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFAVG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 166 AVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTVEIIDISLTQTLNRTLVTS 245
Cdd:COG0341   162 AVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTINTS 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1141153512 246 ITTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAIAMGVS 295
Cdd:COG0341   242 LTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
 
Name Accession Description Interval E-value
SecF COG0341
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ...
 6-295 1.18e-140

Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440110 [Multi-domain]  Cd Length: 291  Bit Score: 398.66  E-value: 1.18e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512   6 LGGKTLRFMSLRKVAMGFSTLLIIASLASLFVKGLNFGLDFTGGTAVEVGFSQPADLKKVRNVLAENDFADASVQLFGSS 85
Cdd:COG0341     4 PGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFGSD 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  86 QEILVRLAPRGDDVKAEVigNQVIAALKQADDSVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVG 165
Cdd:COG0341    84 NDVLIRTPPLDGESAEEV--EKVRAALKEAFGDVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFAVG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 166 AVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTVEIIDISLTQTLNRTLVTS 245
Cdd:COG0341   162 AVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTINTS 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1141153512 246 ITTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAIAMGVS 295
Cdd:COG0341   242 LTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
PRK13024 PRK13024
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 13-293 2.93e-101

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 237276 [Multi-domain]  Cd Length: 755  Bit Score: 313.32  E-value: 2.93e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  13 FMSLRKVAMGFSTLLIIASLASLFVKGLNFGLDFTGGTAVEVGFSQPADLKKVRNVLAENDFADASVQLFGS-SQEILVR 91
Cdd:PRK13024  451 FVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSdNNQVLVR 530

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  92 LAPR--GDDVKAEVIGNQVIAALKQADDSVVMRrIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGA 169
Cdd:PRK13024  531 TYGIlsDDEEADTEIVAKLKNALKNDKGGTIPS-SETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLGAILA 609

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 170 LLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTVEIIDISLTQTLNRTLVTSITTI 249
Cdd:PRK13024  610 LLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTSLTTL 689

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1141153512 250 LVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAIAMG 293
Cdd:PRK13024  690 LVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLE 733
3a0501s07 TIGR00966
protein-export membrane protein SecF; This bacterial protein is always found with the ...
 39-285 4.15e-93

protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273368 [Multi-domain]  Cd Length: 246  Bit Score: 276.46  E-value: 4.15e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  39 GLNFGLDFTGGTAVEVGFSQPADLKKVRNVLAENDFADASVQLFGSSQEILVRLAPRGDDVKAEVIgNQVIAALKQADDS 118
Cdd:TIGR00966   1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQSEELR-EALEEALKNVDPD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 119 VVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITIGLFSVLGLEFDLTILAAILA 198
Cdd:TIGR00966  80 AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 199 VIGYSLNDTIVVSDRIRENFRKVRIDDTVEIIDISLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVFIGT 278
Cdd:TIGR00966 160 IIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGT 239


                  ....*..
gi 1141153512 279 YSSVYVA 285
Cdd:TIGR00966 240 YSSIFIA 246
SecD_SecF pfam02355
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ...
 107-293 1.70e-70

Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.


Pssm-ID: 280510 [Multi-domain]  Cd Length: 189  Bit Score: 216.70  E-value: 1.70e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 107 QVIAALKQADDSVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITIGLFSVLGL 186
Cdd:pfam02355   1 VVEALLKNVGPDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 187 EFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTVEIIDISLTQTLNRTLVTSITTILVLIALFVWGGQTIHGF 266
Cdd:pfam02355  81 EVDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDF 160

                         170       180
                  ....*....|....*....|....*..
gi 1141153512 267 ATALLFGVFIGTYSSVYVASSVAIAMG 293
Cdd:pfam02355 161 SLALLVGVIVGTYSSIFIASPILLDLG 187
RND_1 NF037998
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ...
 129-217 1.04e-06

protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.


Pssm-ID: 468306  Cd Length: 1237  Bit Score: 50.16  E-value: 1.04e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  129 PSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSLNDTI 208
Cdd:NF037998   949 PFTAYGQILQIAISFAIILLALIVYILIRFKWTYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAI 1028


                   ....*....
gi 1141153512  209 VVSDRIREN 217
Cdd:NF037998  1029 IILGKAKSL 1037
RND_1 NF037998
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ...
 148-276 7.39e-03

protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.


Pssm-ID: 468306  Cd Length: 1237  Bit Score: 38.22  E-value: 7.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  148 ICILIYVAFRFEWrFAVGAVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTv 227
Cdd:NF037998   456 IAIMIYLLFAYRL-LGLFAIIIALTSISLTLYSPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYKNKRSIE- 533

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1141153512  228 EIIDISLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVFI 276
Cdd:NF037998   534 ESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVII 582
 
Name Accession Description Interval E-value
SecF COG0341
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ...
 6-295 1.18e-140

Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440110 [Multi-domain]  Cd Length: 291  Bit Score: 398.66  E-value: 1.18e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512   6 LGGKTLRFMSLRKVAMGFSTLLIIASLASLFVKGLNFGLDFTGGTAVEVGFSQPADLKKVRNVLAENDFADASVQLFGSS 85
Cdd:COG0341     4 PGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFGSD 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  86 QEILVRLAPRGDDVKAEVigNQVIAALKQADDSVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVG 165
Cdd:COG0341    84 NDVLIRTPPLDGESAEEV--EKVRAALKEAFGDVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFAVG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 166 AVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTVEIIDISLTQTLNRTLVTS 245
Cdd:COG0341   162 AVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTINTS 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1141153512 246 ITTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAIAMGVS 295
Cdd:COG0341   242 LTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
PRK13024 PRK13024
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 13-293 2.93e-101

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 237276 [Multi-domain]  Cd Length: 755  Bit Score: 313.32  E-value: 2.93e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  13 FMSLRKVAMGFSTLLIIASLASLFVKGLNFGLDFTGGTAVEVGFSQPADLKKVRNVLAENDFADASVQLFGS-SQEILVR 91
Cdd:PRK13024  451 FVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSdNNQVLVR 530

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  92 LAPR--GDDVKAEVIGNQVIAALKQADDSVVMRrIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGA 169
Cdd:PRK13024  531 TYGIlsDDEEADTEIVAKLKNALKNDKGGTIPS-SETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLGAILA 609

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 170 LLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTVEIIDISLTQTLNRTLVTSITTI 249
Cdd:PRK13024  610 LLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTSLTTL 689

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1141153512 250 LVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAIAMG 293
Cdd:PRK13024  690 LVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLE 733
3a0501s07 TIGR00966
protein-export membrane protein SecF; This bacterial protein is always found with the ...
 39-285 4.15e-93

protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273368 [Multi-domain]  Cd Length: 246  Bit Score: 276.46  E-value: 4.15e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  39 GLNFGLDFTGGTAVEVGFSQPADLKKVRNVLAENDFADASVQLFGSSQEILVRLAPRGDDVKAEVIgNQVIAALKQADDS 118
Cdd:TIGR00966   1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQSEELR-EALEEALKNVDPD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 119 VVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITIGLFSVLGLEFDLTILAAILA 198
Cdd:TIGR00966  80 AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 199 VIGYSLNDTIVVSDRIRENFRKVRIDDTVEIIDISLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVFIGT 278
Cdd:TIGR00966 160 IIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGT 239


                  ....*..
gi 1141153512 279 YSSVYVA 285
Cdd:TIGR00966 240 YSSIFIA 246
PRK14726 PRK14726
protein translocase subunit SecDF;
8-291 5.54e-86

protein translocase subunit SecDF;


Pssm-ID: 237805 [Multi-domain]  Cd Length: 855  Bit Score: 275.45  E-value: 5.54e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512   8 GKTLRFMSLRKVAMGFSTLLIIASLASLFVKGLNFGLDFTGGTAVEVGFSQ-PADLKKVRNVLAENDFADASVQLFGSSQ 86
Cdd:PRK14726  544 GANIRFMGIRRYVFTLSAALSLASLVLFATVGLNLGIDFTGGSLIEVRAKQgNADIADIRARLNELNLGEVQVERFGSPR 623

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  87 EILVRLAPRGDDVKAEvignQVIAALKQAD--DSVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAV 164
Cdd:PRK14726  624 DALIRIASQDGGENAE----QSAVTLVRGEleDDYDFRRVEVVGPAVSGELTMAATLGVLAALAAILIYIWIRFEWQFAV 699

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 165 GAVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTVEIIDISLTQTLNRTLVT 244
Cdd:PRK14726  700 GAIIATLHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQTLSRTVLT 779

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1141153512 245 SITTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAIA 291
Cdd:PRK14726  780 SATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIAAPVLIV 826
secF PRK13021
preprotein translocase subunit SecF; Reviewed
 17-304 8.73e-73

preprotein translocase subunit SecF; Reviewed


Pssm-ID: 237274 [Multi-domain]  Cd Length: 297  Bit Score: 226.66  E-value: 8.73e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  17 RKVAMGFSTLLIIASLASLFVKGLNFGLDFTGGTAVEVGFSQPADLKKVRNVLAENDFADASVQLFGSSQEILVRLAprg 96
Cdd:PRK13021   10 RYISSAISIVLMLLSLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLNAAYQQEVSVISASEPGRWVLRYA--- 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  97 dDVKAEVIGNQVIAALKQADDSVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVII 176
Cdd:PRK13021   87 -PADTAQSNVDIQQALAPLGTEVQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIF 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 177 TIGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTVEIIDISLTQTLNRTLVTSITTILVLIALF 256
Cdd:PRK13021  166 VLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALW 245

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1141153512 257 VWGGQTIHGFATALLFGVFIGTYSSVYVASSVAIAMGVSKEDLIPEVI 304
Cdd:PRK13021  246 IMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPEHYKVQVI 293
SecD_SecF pfam02355
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ...
 107-293 1.70e-70

Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.


Pssm-ID: 280510 [Multi-domain]  Cd Length: 189  Bit Score: 216.70  E-value: 1.70e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 107 QVIAALKQADDSVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITIGLFSVLGL 186
Cdd:pfam02355   1 VVEALLKNVGPDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 187 EFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTVEIIDISLTQTLNRTLVTSITTILVLIALFVWGGQTIHGF 266
Cdd:pfam02355  81 EVDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDF 160

                         170       180
                  ....*....|....*....|....*..
gi 1141153512 267 ATALLFGVFIGTYSSVYVASSVAIAMG 293
Cdd:pfam02355 161 SLALLVGVIVGTYSSIFIASPILLDLG 187
2A0604s01 TIGR00916
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ...
 124-282 2.86e-51

protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273336 [Multi-domain]  Cd Length: 192  Bit Score: 167.82  E-value: 2.86e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 124 IEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYS 203
Cdd:TIGR00916  34 VGTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLFGATLTLPGIAGLLTIIGYS 113

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1141153512 204 LNDTIVVSDRIRENFRKVRIDDTVEIIDISLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSV 282
Cdd:TIGR00916 114 VDDTVVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
PRK13023 PRK13023
protein translocase subunit SecDF;
13-294 1.95e-49

protein translocase subunit SecDF;


Pssm-ID: 171842 [Multi-domain]  Cd Length: 758  Bit Score: 175.19  E-value: 1.95e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  13 FMSLRKVAMGFStLLIIASLASLFVK-GLNFGLDFTGGTAVEV-GFSQPADLKKVRNVLAENDFADASVQLFGSSQEILV 90
Cdd:PRK13023  455 FMRLQFVTLGIS-VLACAIVVALFVNiGFNYGIDFRGGSMVELqARNGDANLEDINERLAELNIDSARVLPAKSPRSALV 533

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  91 RLAPR--GDDVKAEVignqVIAALKQADDSVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVG 168
Cdd:PRK13023  534 IIGSQevGDDAEQTV----AVKLRGEFEQDYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVL 609

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 169 ALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTVEIIDISLTQTLNRTLVTSITT 248
Cdd:PRK13023  610 STLHDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVT 689

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1141153512 249 ILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAIAMGV 294
Cdd:PRK13023  690 FLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGL 735
PRK12911 PRK12911
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 42-298 5.54e-34

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 171815 [Multi-domain]  Cd Length: 1403  Bit Score: 131.90  E-value: 5.54e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512   42 FGLDFTGGTAV-----EVGFSQPADL-----KKVRNV-LAENDFadaSVQLFGSSQEILVRLAPRG-DDVKAEVIGnqvi 109
Cdd:PRK12911  1114 LGMDFKGGYALtldpsDVCEYDVEQMrsklrKKFQQIgLSSRDF---RIRTFDSSEKIKIYFSQNAlDRVEAIEGA---- 1186

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  110 aALKQADD--SVVMRRIEFVGPSVGED-------------------LKEQGGLAMLTALICILIYVAFRFEWRFAVGAVG 168
Cdd:PRK12911  1187 -GSEQSDHhlALVLGVLSDTGSDTSSEvfdatqnfwfkvsgqlsnkMRTQAVIALFGALGIILLYVSLRFEWRYAFSAIC 1265

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  169 ALLHDVIITIGL-----FSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTVEIIDISLTQTLNRTLV 243
Cdd:PRK12911  1266 ALIHDLLATCAVlvalhFFLQKIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFTPMPILINDALQKTLGRTVM 1345

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1141153512  244 TSITTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAIAMgVSKED 298
Cdd:PRK12911  1346 TTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFM-VRKEE 1399
PRK08578 PRK08578
preprotein translocase subunit SecF; Reviewed
 26-275 2.07e-16

preprotein translocase subunit SecF; Reviewed


Pssm-ID: 236302 [Multi-domain]  Cd Length: 292  Bit Score: 78.05  E-value: 2.07e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  26 LLIIASLASLFVKGLNFGLDFTGGTAVEVgFSQPADLKKVRNVLAENDFADASVQlfGSSQEILVrlAPRGDDVKAEVIG 105
Cdd:PRK08578   28 LLLLGGTFATTGSPVKLGIDFTGGTEITI-QTNDASPDELESALSGEPGVDVRKG--SGNGYIIT--FGSGDDTDVDKLA 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 106 NQVIAALKQADDSVVMRRIEFVGPSVGEDLKEQGGLAMLTALI--CILIYVAFR-FEWRFAVgaVGALLHDVIITIGLFS 182
Cdd:PRK08578  103 DAVKEFFNVDSISELNYSEKQIGPTFGSQFQEQALKAVGFAFIgmAVVVFLIFRtPVPSLAV--ILSAFSDIIIALALMN 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 183 VLGLEFDLTILAAILAVIGYSLNDTIVVSDRIREnfRKVRIDDTV-EIIDISLTQTLnrtlvTSITTILVL-IALFVWGG 260
Cdd:PRK08578  181 LFGIELSLATVAALLMLIGYSVDSDILLTTRVLK--RRGTFDESIkRAMRTGITMTL-----TTIAAMAVLyIVSTIPQA 253

                         250
                  ....*....|....*
gi 1141153512 261 QTIHGFATALLFGVF 275
Cdd:PRK08578  254 EVLANIAAVLIFGLL 268
secD TIGR01129
protein-export membrane protein SecD; Members of this family are highly variable in length ...
 127-285 3.92e-14

protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273456 [Multi-domain]  Cd Length: 397  Bit Score: 72.32  E-value: 3.92e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 127 VGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWrFAVGAVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSLND 206
Cdd:TIGR01129 238 IGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRL-FGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDA 316

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1141153512 207 TIVVSDRIRENFRKVRidDTVEIIDISLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVA 285
Cdd:TIGR01129 317 NVLIYERIKEELRLGK--SVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFT 393
SecD COG0342
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ...
 127-284 1.83e-13

Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440111 [Multi-domain]  Cd Length: 434  Bit Score: 70.53  E-value: 1.83e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 127 VGPSVGEDLKEQGGLAMLTALICILIYVAFRFeWRFAVGAVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSLND 206
Cdd:COG0342   261 VGPTLGADSIEKGLIAGLIGLLLVALFMLLYY-RLPGLVANIALALNVVLLLGVLSLLGATLTLPGIAGIILTIGMAVDA 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 207 TIVVSDRIRENFRKVRiddtveiidiSLTQTLN-------RTLVTS-ITTILVLIALFVWGGQTIHGFATALLFGVFIGT 278
Cdd:COG0342   340 NVLIFERIREELRAGR----------SLRAAIEagfkrafSTILDAnVTTLIAAVVLFVLGTGPVKGFAVTLILGILISM 409


                  ....*.
gi 1141153512 279 YSSVYV 284
Cdd:COG0342   410 FTAVPV 415
PRK14726 PRK14726
protein translocase subunit SecDF;
127-275 2.96e-11

protein translocase subunit SecDF;


Pssm-ID: 237805 [Multi-domain]  Cd Length: 855  Bit Score: 64.36  E-value: 2.96e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 127 VGPSVGEDLKEQGGLAMLTA--LICILIYVAFRFewrFAVGAVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSL 204
Cdd:PRK14726  362 VGPGLGADSIAAGLVAGLIAaiLVAALMIGFYGF---LGVIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAV 438

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1141153512 205 NDTIVVSDRIRENFRKVRidDTVEIIDISLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVF 275
Cdd:PRK14726  439 DSNVLIYERIREEEKTGH--SLIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGIL 507
PRK13024 PRK13024
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 125-285 1.00e-10

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 237276 [Multi-domain]  Cd Length: 755  Bit Score: 62.56  E-value: 1.00e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 125 EFVGPSVGEDLKEQGGLAML--TALICILIYVAFRFewrFAVGAVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIGY 202
Cdd:PRK13024  254 RSVGPTLGQDAIDAGIIAGIigFALIFLFMLVYYGL---PGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGM 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 203 SLNDTIVVSDRIREnfrKVRIDDTV-EIIDISLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVFIGTYSS 281
Cdd:PRK13024  331 AVDANVLIFERIKE---ELRKGKSLkKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTA 407


                  ....
gi 1141153512 282 VYVA 285
Cdd:PRK13024  408 VFLT 411
secD PRK08343
preprotein translocase subunit SecD; Reviewed
 123-277 2.10e-10

preprotein translocase subunit SecD; Reviewed


Pssm-ID: 236245 [Multi-domain]  Cd Length: 417  Bit Score: 61.04  E-value: 2.10e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 123 RIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRF-EWRFAVGAVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIG 201
Cdd:PRK08343  247 GSGSVSPSLGEQFKKGSLIAGLLALLAVALVVFLRYrEPRIALPMVITSLSEVIIILGFAALIGWQLDLASIAGIIAVIG 326

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 202 YSLNDTIVVSDRI-------RENFRKVRIDDTVEIIDISLTqtlnrtlvtsiTTILVLIALFVWGGQTIHGFATALLFGV 274
Cdd:PRK08343  327 TGVDDLIIITDEVlhegkvpSRKVFLSRIKRAFFIIFAAAA-----------TTIAAMSPLAVMGLGDLKGFAITTILGV 395


                  ...
gi 1141153512 275 FIG 277
Cdd:PRK08343  396 LIG 398
2A067 TIGR00921
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ...
 55-308 3.67e-09

The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 273340 [Multi-domain]  Cd Length: 719  Bit Score: 57.54  E-value: 3.67e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  55 GFSQPADLKKVRNVLAE-NDFADASVQLFGSSQEILVRLAPRGDDVKAEVIGNQVIAALKQADDSVVMRRIEFVGPSVGE 133
Cdd:TIGR00921 106 NFPLPVTMPEVRPLMSEyPRSKEMFLSKDHTVAIIIVQLKSDADYKQVVPIYNDVERSLERTNPPSGKFLDVTGSPAINY 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 134 DLKEQGG------LAMLTALICILIYVAFRFEWRFAVGAVgALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSLNDT 207
Cdd:TIGR00921 186 DIEREFGkdmgttMAISGILVVLVLLLDFKRWWRPLLPLV-IILFGVAWVLGIMGWLGIPLYATTLLAVPMLIGVGIDYG 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 208 IVVSDRIRENFRKVRidDTVEIIDISLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASS 287
Cdd:TIGR00921 265 IQTLNRYEEERDIGR--AKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLVLPA 342

                         250       260
                  ....*....|....*....|.
gi 1141153512 288 VAIAMGVSKEDLIPEVIEKEG 308
Cdd:TIGR00921 343 LLQSIDIGREKVKKEIIAIGG 363
PRK13023 PRK13023
protein translocase subunit SecDF;
127-274 1.56e-08

protein translocase subunit SecDF;


Pssm-ID: 171842 [Multi-domain]  Cd Length: 758  Bit Score: 55.78  E-value: 1.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 127 VGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWrFAVGAVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSLND 206
Cdd:PRK13023  268 IASALGEDYASAAVLAALLAALVVGLFMVLSYGI-LGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDA 346

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1141153512 207 TIVVSDRIRENFRKVRidDTVEIIDISLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGV 274
Cdd:PRK13023  347 HILIYERVREDRRKGY--SVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGI 412
PRK12911 PRK12911
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 125-284 6.81e-08

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 171815 [Multi-domain]  Cd Length: 1403  Bit Score: 54.09  E-value: 6.81e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  125 EFVGPSVGEDLKEQG------GLAMLTalicILIYVAFRFEWRFAVGAVgaLLHDVIITIGLfSVLGLEFDLTILAAILA 198
Cdd:PRK12911   897 EVISPELGKSQRTQGiisvclGLAVLI----VLMSVYYRFGGVIASGAV--LLNLLLIWAAL-QYLDAPLTLSGLAGIVL 969

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  199 VIGYSLNDTIVVSDRIRENFRKVRidDTVEIIDISLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVFIGT 278
Cdd:PRK12911   970 AMGMAVDANVLVFERIREEYLLSR--SLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSM 1047


                   ....*.
gi 1141153512  279 YSSVYV 284
Cdd:PRK12911  1048 FTALFM 1053
MMPL COG1033
Predicted exporter protein, RND superfamily [General function prediction only];
59-276 7.30e-08

Predicted exporter protein, RND superfamily [General function prediction only];


Pssm-ID: 440656 [Multi-domain]  Cd Length: 767  Bit Score: 53.71  E-value: 7.30e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  59 PADLKKVRNVLAENDF-------ADASVQLfgssqeILVRLAPRGDDVKAEV--IGNQVIAALKQADDSVVmrRIEFVGP 129
Cdd:COG1033   134 PEELAELREKVLSSPLyvgrlvsPDGKATL------IVVTLDPDPLSSDLDRkeVVAEIRAIIAKYEDPGV--EVYLTGF 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 130 ---------SVGEDLKEQGGLAMLtaLICILIYVAFRfEWRFAVGAVGALLHDVIITIGLFSVLGLEFD-LTILAAILaV 199
Cdd:COG1033   206 pvlrgdiaeAIQSDLAIFFPLALL--LILLLLFLFFR-SLRGVLLPLLVVLLAVIWTLGLMGLLGIPLSpLTILVPPL-L 281

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1141153512 200 IGYSLNDTIVVSDRIRENFRKVRidDTVEIIDISLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVFI 276
Cdd:COG1033   282 LAIGIDYGIHLLNRYREERRKGL--DKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLL 356
Sec_GG pfam07549
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ...
 34-60 1.17e-07

SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.


Pssm-ID: 462205 [Multi-domain]  Cd Length: 27  Bit Score: 46.90  E-value: 1.17e-07
                          10        20
                  ....*....|....*....|....*..
gi 1141153512  34 SLFVKGLNFGLDFTGGTAVEVGFSQPA 60
Cdd:pfam07549   1 SLFTRGLNLGLDFTGGTVIELQFDQPV 27
secD PRK05812
preprotein translocase subunit SecD; Reviewed
 127-284 9.43e-07

preprotein translocase subunit SecD; Reviewed


Pssm-ID: 235615 [Multi-domain]  Cd Length: 462  Bit Score: 49.84  E-value: 9.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 127 VGPSVGEDLKEQGGLAMLTALICILIYVAF--RFewrFAVGAVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSL 204
Cdd:PRK05812  287 IGPSLGADSIRAGLIAGLIGLALVLLFMILyyRL---FGLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAV 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512 205 NDTIVVSDRIRENFRKVRiddtveiidiSLTQTLN-------RTLVTS-ITTILVLIALFVWGGQTIHGFATALLFGVFI 276
Cdd:PRK05812  364 DANVLIFERIREELREGR----------SLRSAIEagfkrafSTILDSnITTLIAAIILYALGTGPVKGFAVTLGIGILT 433


                  ....*...
gi 1141153512 277 GTYSSVYV 284
Cdd:PRK05812  434 SMFTAITV 441
RND_1 NF037998
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ...
 129-217 1.04e-06

protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.


Pssm-ID: 468306  Cd Length: 1237  Bit Score: 50.16  E-value: 1.04e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  129 PSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSLNDTI 208
Cdd:NF037998   949 PFTAYGQILQIAISFAIILLALIVYILIRFKWTYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAI 1028


                   ....*....
gi 1141153512  209 VVSDRIREN 217
Cdd:NF037998  1029 IILGKAKSL 1037
RND_1 NF037998
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ...
 148-276 7.39e-03

protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.


Pssm-ID: 468306  Cd Length: 1237  Bit Score: 38.22  E-value: 7.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141153512  148 ICILIYVAFRFEWrFAVGAVGALLHDVIITIGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTv 227
Cdd:NF037998   456 IAIMIYLLFAYRL-LGLFAIIIALTSISLTLYSPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYKNKRSIE- 533

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1141153512  228 EIIDISLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVFI 276
Cdd:NF037998   534 ESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVII 582
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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