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Conserved domains on  [gi|1154877076|ref|WP_078784047|]
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MULTISPECIES: 30S ribosomal protein S16 [Gemmiger]

Protein Classification

30S ribosomal protein S16( domain architecture ID 10000742)

30S ribosomal protein S16 is a ribosomal protein that may have a cation-dependent endonuclease activity

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-76 7.26e-50

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 439998  Cd Length: 76  Bit Score: 150.97  E-value: 7.26e-50
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1154877076  1 MVKIRLRRMGAKKAPFYRVVVADSRFARDGRFIEEIGYYDPTKEPSVVKIDAEKAKQWLDNGAQPTDTVREILKKA 76
Cdd:COG0228    1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPARIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-76 7.26e-50

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 150.97  E-value: 7.26e-50
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1154877076  1 MVKIRLRRMGAKKAPFYRVVVADSRFARDGRFIEEIGYYDPTKEPSVVKIDAEKAKQWLDNGAQPTDTVREILKKA 76
Cdd:COG0228    1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPARIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-79 1.66e-37

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 120.04  E-value: 1.66e-37
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1154877076  2 VKIRLRRMGAKKAPFYRVVVADSRFARDGRFIEEIGYYDPTKEPSVVKIDAEKAKQWLDNGAQPTDTVREILKKAAVL 79
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEDLVKLNVERIKHWLSKGAQPTDTVRKLLKKAGVF 78
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-66 2.99e-34

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 110.93  E-value: 2.99e-34
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1154877076  8 RMGAKKAPFYRVVVADSRFARDGRFIEEIGYYDPTKEPS--VVKIDAEKAKQWLDNGAQPT 66
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPGepRVKLDEERIKYWLGVGAQPT 61
rpsP PRK14520
30S ribosomal protein S16; Provisional
 2-75 1.95e-32

30S ribosomal protein S16; Provisional


Pssm-ID: 184724 [Multi-domain]  Cd Length: 155  Bit Score: 109.40  E-value: 1.95e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1154877076   2 VKIRLRRMGAKKAPFYRVVVADSRFARDGRFIEEIGYYDPTKEPSVVKIDAEKAKQWLDNGAQPTDTVREILKK 75
Cdd:PRK14520    3 VKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHPKEEPSLIEIDSERAQYWLSVGAQPTEPVLALLKI 76
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-76 7.26e-50

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 150.97  E-value: 7.26e-50
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1154877076  1 MVKIRLRRMGAKKAPFYRVVVADSRFARDGRFIEEIGYYDPTKEPSVVKIDAEKAKQWLDNGAQPTDTVREILKKA 76
Cdd:COG0228    1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPARIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-79 1.66e-37

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 120.04  E-value: 1.66e-37
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1154877076  2 VKIRLRRMGAKKAPFYRVVVADSRFARDGRFIEEIGYYDPTKEPSVVKIDAEKAKQWLDNGAQPTDTVREILKKAAVL 79
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEDLVKLNVERIKHWLSKGAQPTDTVRKLLKKAGVF 78
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-66 2.99e-34

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 110.93  E-value: 2.99e-34
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1154877076  8 RMGAKKAPFYRVVVADSRFARDGRFIEEIGYYDPTKEPS--VVKIDAEKAKQWLDNGAQPT 66
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPGepRVKLDEERIKYWLGVGAQPT 61
rpsP PRK14520
30S ribosomal protein S16; Provisional
 2-75 1.95e-32

30S ribosomal protein S16; Provisional


Pssm-ID: 184724 [Multi-domain]  Cd Length: 155  Bit Score: 109.40  E-value: 1.95e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1154877076   2 VKIRLRRMGAKKAPFYRVVVADSRFARDGRFIEEIGYYDPTKEPSVVKIDAEKAKQWLDNGAQPTDTVREILKK 75
Cdd:PRK14520    3 VKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHPKEEPSLIEIDSERAQYWLSVGAQPTEPVLALLKI 76
rpsP PRK14521
30S ribosomal protein S16; Provisional
 2-79 5.20e-29

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 101.78  E-value: 5.20e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1154877076   2 VKIRLRRMGAKKAPFYRVVVADSRFARDGRFIEEIGYYDPTKEPSVVKIDAEKAKQWLDNGAQPTDTVREILKKAAVL 79
Cdd:PRK14521    3 VKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPNTNPATVDLNFDRAVYWLMNGAQPTDTARNILSYEGVL 80
rps16 CHL00005
ribosomal protein S16
 1-79 4.07e-26

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 91.24  E-value: 4.07e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1154877076  1 MVKIRLRRMGAKKAPFYRVVVADSRFARDGRFIEEIGYYDPTKEPSvvKIDAEKAKQWLDNGAQPTDTVREILKKAAVL 79
Cdd:CHL00005   1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQT--YLNVPAILYFLEKGAQPTETVYDILKKAEVF 77
rpsP PRK14522
30S ribosomal protein S16; Provisional
 2-77 7.14e-12

30S ribosomal protein S16; Provisional


Pssm-ID: 172988 [Multi-domain]  Cd Length: 116  Bit Score: 56.16  E-value: 7.14e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1154877076   2 VKIRLRRMGAKKAPFYRVVVADSRFARDGRFIEEIGYYDPTKEPSvVKIDAEKAKQWLDNGAQPTDTVREILKKAA 77
Cdd:PRK14522    3 LKIRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDPHSEQN-YQLKSERIFYWLNQGAELTEKAGALVKQGA 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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