|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
406-708 |
0e+00 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 528.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 406 FFARLKQGLLKTKTNIGSGFANIFRG-KKIDDELFEDLETQLLTADIGVETTMKLIDNLTDAADRKQLKDGEALYDLMKQ 484
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGkKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 485 EMADILKDAEKPLEIpANKKPFVILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVI 564
Cdd:COG0552 81 ELLEILDPVDKPLAI-EEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 565 AQHTGADSASVVFDAFQAAQARDVDVLIADTAGRLQNKDNLMQELEKIARVMKKLDPDAPHEVMLTIDAGTGQNAISQVK 644
Cdd:COG0552 160 AQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAK 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1176382922 645 LFDQAVGLTGITLTKLDGTAKGGVIFAVADQFKMPIRYIGVGESIDDLRTFKSDDFIEALFSQD 708
Cdd:COG0552 240 VFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGEE 303
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
400-705 |
0e+00 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 525.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 400 KPKKKGFFARLKQGLLKTKTNIGSGFANIFRGKKIDDELFEDLETQLLTADIGVETTMKLIDNLTDAADRKQLKDGEALY 479
Cdd:PRK10416 10 KEKKEGWFERLKKGLSKTRENFGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 480 DLMKQEMADILKDAEKPLEIpANKKPFVILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERN 559
Cdd:PRK10416 90 ELLKEELAEILEPVEKPLNI-EEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERV 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 560 DIPVIAQHTGADSASVVFDAFQAAQARDVDVLIADTAGRLQNKDNLMQELEKIARVMKKLDPDAPHEVMLTIDAGTGQNA 639
Cdd:PRK10416 169 GVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNA 248
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1176382922 640 ISQVKLFDQAVGLTGITLTKLDGTAKGGVIFAVADQFKMPIRYIGVGESIDDLRTFKSDDFIEALF 705
Cdd:PRK10416 249 LSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALL 314
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
433-705 |
2.56e-129 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 383.92 E-value: 2.56e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 433 KIDDELFEDLETQLLTADIGVETTMKLIDNLTDAADRKQLKDGEALYDLMKQEMADILKDAE----KPLEIPANKKPFVI 508
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLlkntDLELIVEENKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 509 LMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVVFDAFQAAQARDV 588
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 589 DVLIADTAGRLQNKDNLMQELEKIARVMKKLDPDAPHEVMLTIDAGTGQNAISQVKLFDQAVGLTGITLTKLDGTAKGGV 668
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 1176382922 669 IFAVADQFKMPIRYIGVGESIDDLRTFKSDDFIEALF 705
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
506-704 |
2.65e-106 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 321.83 E-value: 2.65e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 506 FVILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVVFDAFQAAQA 585
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 586 RDVDVLIADTAGRLQNKDNLMQELEKIARVMKKLDPDAPHEVMLTIDAGTGQNAISQVKLFDQAVGLTGITLTKLDGTAK 665
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 1176382922 666 GGVIFAVADQFKMPIRYIGVGESIDDLRTFKSDDFIEAL 704
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
505-705 |
3.61e-94 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 290.08 E-value: 3.61e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 505 PFVILMVGVNGVGKTTTIGKMAKQFQAQG-KSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVVFDAFQAA 583
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 584 QARDVDVLIADTAGRLQNKDNLMQELEKIARVMKkldpdaPHEVMLTIDAGTGQNAISQVKLFDQAVGLTGITLTKLDGT 663
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1176382922 664 AKGGVIFAVADQFKMPIRYIGVGESIDDLRTFKSDDFIEALF 705
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLL 196
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
506-704 |
3.22e-89 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 277.12 E-value: 3.22e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 506 FVILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVVFDAFQAAQA 585
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 586 RDVDVLIADTAGRLQNKDNLMQELEKIARVMKkldpdaPHEVMLTIDAGTGQNAISQVKLFDQAVGLTGITLTKLDGTAK 665
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVA------PDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 1176382922 666 GGVIFAVADQFKMPIRYIGVGESIDDLRTFKSDDFIEAL 704
Cdd:pfam00448 155 GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
506-704 |
1.16e-80 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 254.99 E-value: 1.16e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 506 FVILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVVFDAFQAAQA 585
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 586 RDVDVLIADTAGRLQNKDNLMQELEKIARVmkkldpDAPHEVMLTIDAGTGQNAISQVKLFDQAVGLTGITLTKLDGTAK 665
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEV------ESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 1176382922 666 GGVIFAVADQFKMPIRYIGVGESIDDLRTFKSDDFIEAL 704
Cdd:cd03115 155 GGAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
400-706 |
6.40e-75 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 244.88 E-value: 6.40e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 400 KPKKKGFFARLKQGLLKtktnigsgfanifrGKKIDDELfEDLETQLLTADIGVETTMKLIDNLTDAADRKQLKDGE--- 476
Cdd:PRK14974 43 KKEKPGFFDKAKITEIK--------------EKDIEDLL-EELELELLESDVALEVAEEILESLKEKLVGKKVKRGEdve 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 477 -ALYDLMKQEMADIL---KDAEKPLEIPANKKPFVILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQL 552
Cdd:PRK14974 108 eIVKNALKEALLEVLsvgDLFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQL 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 553 QVWGERNDIPVIAQHTGADSASVVFDAFQAAQARDVDVLIADTAGRLQNKDNLMQELEKIARVMKkldpdaPHEVMLTID 632
Cdd:PRK14974 188 EEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTK------PDLVIFVGD 261
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1176382922 633 AGTGQNAISQVKLFDQAVGLTGITLTKLDGTAKGGVIFAVADQFKMPIRYIGVGESIDDLRTFKSDDFIEALFS 706
Cdd:PRK14974 262 ALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
420-695 |
9.36e-64 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 217.97 E-value: 9.36e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 420 NIGSGFANIF---RGK-KIDDELFEDL--ETQ--LLTADIGVETTMKLIDNLTDAA----DRKQLKDGEALYDLMKQEMA 487
Cdd:COG0541 4 NLSERLQGAFkklRGKgRLTEENIKEAlrEVRraLLEADVNLKVVKDFIERVKERAlgeeVLKSLTPGQQVIKIVHDELV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 488 DILKDAEKPLEIpANKKPFVILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQH 567
Cdd:COG0541 84 ELLGGENEELNL-AKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 568 TGADSASVVFDAFQAAQARDVDVLIADTAGRLQNKDNLMQELEKIARVMKkldpdaPHEVMLTIDAGTGQNAISQVKLFD 647
Cdd:COG0541 163 DGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVN------PDETLLVVDAMTGQDAVNVAKAFN 236
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1176382922 648 QAVGLTGITLTKLDGTAKGGVIFAVADQFKMPIRYIGVGESIDDLRTF 695
Cdd:COG0541 237 EALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPF 284
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
507-698 |
1.43e-57 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 193.58 E-value: 1.43e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 507 VILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVVFDAFQAAQAR 586
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 587 DVDVLIADTAGRLQNKDNLMQELEKIARVMKkldpdaPHEVMLTIDAGTGQNAISQVKLFDQAVGLTGITLTKLDGTAKG 666
Cdd:cd18539 82 GFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARG 155
|
170 180 190
....*....|....*....|....*....|..
gi 1176382922 667 GVIFAVADQFKMPIRYIGVGESIDDLRTFKSD 698
Cdd:cd18539 156 GAALSIRHVTGKPIKFIGVGEKIEDLEPFHPD 187
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
420-701 |
8.71e-56 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 196.97 E-value: 8.71e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 420 NIGSGFANIFRGKKID----DELFEDLETQLLTADIGVETTMKLIDNLTDAADRKQLKDG----EALYDLMKQEMADILK 491
Cdd:PRK00771 4 SLRDALKKLAGKSRIDektvKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGltprEHVIKIVYEELVKLLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 492 DAEKPLEIPanKKPFVILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGAD 571
Cdd:PRK00771 84 EETEPLVLP--LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 572 SASVVFDAFQAAQarDVDVLIADTAGRLQNKDNLMQELEKIARVMKkldpdaPHEVMLTIDAGTGQNAISQVKLFDQAVG 651
Cdd:PRK00771 162 AVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVK------PDEVLLVIDATIGQQAKNQAKAFHEAVG 233
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1176382922 652 LTGITLTKLDGTAKGGVIFAVADQFKMPIRYIGVGESIDDLRTFKSDDFI 701
Cdd:PRK00771 234 IGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFI 283
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
506-704 |
1.68e-46 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 163.52 E-value: 1.68e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 506 FVILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVVFDAFQAAQA 585
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 586 RDVDVLIADTAGRLQNKDNLMQELEKIARVMKkldpdaPHEVMLTIDAGTGQNAISQVKLFDQAVGLTGITLTKLDGTAK 665
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVK------PDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAK 154
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1176382922 666 -GGVIFAVADQfKMPIRYIGVGESIDDLRTFKSDDFIEAL 704
Cdd:cd17875 155 gGGALSAVAAT-GAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
506-704 |
2.37e-44 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 157.78 E-value: 2.37e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 506 FVILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVVFDAFQAAQA 585
Cdd:cd17876 1 YVIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 586 RDVDVLIADTAGRLQNKDNLMQELEKIARVMKkldPDApheVMLTIDAGTGQNAISQVKLFDQAV----------GLTGI 655
Cdd:cd17876 81 QGFDVVLIDTAGRMQNNEPLMRALAKLIKENN---PDL---VLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGI 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1176382922 656 TLTKLDGTA-KGGVIFAVADQFKMPIRYIGVGESIDDLRTFKSDDFIEAL 704
Cdd:cd17876 155 VLTKFDTIDdKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
437-704 |
3.28e-38 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 147.29 E-value: 3.28e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 437 ELFEDLETQLLTADIGVETTMKLIDNLTDAADRKQLKDGEALYDLMKQEMAD---ILKDAEKPLEIPANKKPFVILMVGV 513
Cdd:TIGR01425 29 TMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEelcNLVDPGVEAFTPKKGKTCVIMFVGL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 514 NGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVVFDAFQAAQARDVDVLIA 593
Cdd:TIGR01425 109 QGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIASEGVEKFRKEKFDIIIV 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 594 DTAGRLQNKDNLMQELEKIARVMKkldpdaPHEVMLTIDAGTGQNAISQVKLFDQAVGLTGITLTKLDGTAKGGVIFAVA 673
Cdd:TIGR01425 189 DTSGRHKQEKELFEEMQQVREAIK------PDSIIFVMDGSIGQAAFGQAKAFKDSVEVGSVIITKLDGHAKGGGALSAV 262
|
250 260 270
....*....|....*....|....*....|.
gi 1176382922 674 DQFKMPIRYIGVGESIDDLRTFKSDDFIEAL 704
Cdd:TIGR01425 263 AATKSPIIFIGTGEHVDEFEIFDAEPFVSKL 293
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
436-705 |
2.35e-33 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 131.91 E-value: 2.35e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 436 DELFEDLETQLLTADIGVETTMKLIDNLtdaadrKQLKDGEALYDLMKQEMADILKDAEKPleIPANKKpfVILMVGVNG 515
Cdd:COG1419 105 PPELAELLERLLEAGVSPELARELLEKL------PEDLSAEEAWRALLEALARRLPVAEDP--LLDEGG--VIALVGPTG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 516 VGKTTTIGKMAKQF-QAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVVfdafqaAQARDVDVLIAD 594
Cdd:COG1419 175 VGKTTTIAKLAARFvLRGKKKVALITTDTYRIGAVEQLKTYARILGVPVEVAYDPEELKEAL------ERLRDKDLVLID 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 595 TAGRLQNKDNLMQELEKIarvmkkLDPDAPHEVMLTIDAGT-GQNAISQVKLFdQAVGLTGITLTKLDGTAKGGVIFAVA 673
Cdd:COG1419 249 TAGRSPRDPELIEELKAL------LDAGPPIEVYLVLSATTkYEDLKEIVEAF-SSLGLDGLILTKLDETASLGSILNLL 321
|
250 260 270
....*....|....*....|....*....|...
gi 1176382922 674 DQFKMPIRYIGVGESI-DDLRTFKSDDFIEALF 705
Cdd:COG1419 322 IRTGLPLSYITNGQRVpEDIEVADPERLARLLL 354
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
507-692 |
1.63e-30 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 118.42 E-value: 1.63e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 507 VILMVGVNGVGKTTTIGKMAKQFQA-QGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAqhtgADSAsvvfDAFQAA-- 583
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLkKGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEV----AEDP----EDLADAle 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 584 QARDVDVLIADTAGRLQNKDNLMQELEKIARVmkkldpDAPHEVMLTIDAGT-GQNAISQVKLFdQAVGLTGITLTKLDG 662
Cdd:cd17873 74 RLSDRDLILIDTAGRSPRDKEQLEELKELLGA------GEDIEVHLVLSATTkAKDLKEIIERF-SPLGYRGLILTKLDE 146
|
170 180 190
....*....|....*....|....*....|.
gi 1176382922 663 TAKGGVIFAVADQFKMPIRYIGVGESI-DDL 692
Cdd:cd17873 147 TTSLGSVLSVLAESQLPVSYVTTGQRVpEDI 177
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
430-706 |
5.24e-22 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 99.20 E-value: 5.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 430 RGKKIDDELFEDLETQLLTADIGVETTMKLIDNLTDAADRKQLKDGEALYDLMkqemADILKDAEKplEIPANKKpfVIL 509
Cdd:PRK05703 154 RQVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLELL----ANMIPVRVE--DILKQGG--VVA 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 510 MVGVNGVGKTTTIGKMAKQFQA--QGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIaqhtgadsasVVFDAFQAAQA-- 585
Cdd:PRK05703 226 LVGPTGVGKTTTLAKLAARYALlyGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE----------VVYDPKELAKAle 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 586 ----RDVdVLIaDTAGRLQNKDNLMQELEKIARvmkklDPDAPHEVMLTIDAgTGQN----AIsqVKLFDQaVGLTGITL 657
Cdd:PRK05703 296 qlrdCDV-ILI-DTAGRSQRDKRLIEELKALIE-----FSGEPIDVYLVLSA-TTKYedlkDI--YKHFSR-LPLDGLIF 364
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1176382922 658 TKLDGTAKGGVIFAVADQFKMPIRYIGVGESI-DDLRTFKSDDFIEALFS 706
Cdd:PRK05703 365 TKLDETSSLGSILSLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
432-597 |
8.03e-15 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 75.45 E-value: 8.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 432 KKIDDELFEDLETQLLTADIGVETTMKLIDNLtdaadrKQLKDGEALYDLMKQEMADILKdaEKPLEIPANKKPFVILMV 511
Cdd:TIGR03499 129 WLQRPPERAKLYERLLEAGVSEELARELLEKL------PEDADAEDAWRWLREALEGMLP--VKPEEDPILEQGGVIALV 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 512 GVNGVGKTTTIGKMAKQF--QAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIaqhtgadsasVVFDAFQAAQA---- 585
Cdd:TIGR03499 201 GPTGVGKTTTLAKLAARFalEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPVK----------VARDPKELREAldrl 270
|
170
....*....|..
gi 1176382922 586 RDVDVLIADTAG 597
Cdd:TIGR03499 271 RDKDLILIDTAG 282
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
97-383 |
2.87e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 2.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 97 KEQAER-EEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEvARLAKEQAEREEAERLAK 175
Cdd:COG1196 206 ERQAEKaERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELE-AELEELRLELEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 176 EEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQAEREEAARLAKEQ 255
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 256 AEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEKAEREEAARLAKEQAE 335
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1176382922 336 REEAARLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERLAK 383
Cdd:COG1196 445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
418-490 |
9.47e-13 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 63.72 E-value: 9.47e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1176382922 418 KTNIGSGFANIFRGKKIDDELFEDLETQLLTADIGVETTMKLIDNLTDAADR---KQLKDGEALYDLMKQEMADIL 490
Cdd:smart00963 2 SKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKGevlKGLTPKQEVKKILKEELVKIL 77
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-437 |
1.57e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.33 E-value: 1.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 15 KSDKKQQEAEREAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAERLAKEQAEREEAER 94
Cdd:PTZ00121 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 95 LAKEQAEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEAERLA 174
Cdd:PTZ00121 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 175 KEEAEREEAARLAKeqAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAK----EQAEREEAAR 250
Cdd:PTZ00121 1516 KKAEEAKKADEAKK--AEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAlrkaEEAKKAEEAR 1593
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 251 LAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAAR------LAKEQAEREEAARLAKEQAE----REEAARLAKEK 320
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKkkveqlKKKEAEEKKKAEELKKAEEEnkikAAEEAKKAEED 1673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 321 AEREEAARLAKEQAEREEAARLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERQAQEQEK 400
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
|
410 420 430
....*....|....*....|....*....|....*..
gi 1176382922 401 PKKKGFFARLKQGLLKTKTNIGSGFANIFRGKKIDDE 437
Cdd:PTZ00121 1754 EEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDE 1790
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
504-630 |
2.84e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 64.70 E-value: 2.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 504 KPFVILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVwgerndIPVIAQHTGADSASVVFDAFQAA 583
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL------IIVGGKKASGSGELRLRLALALA 74
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1176382922 584 QARDVDVLIADTAGRLQNKDNLMQELEKI-ARVMKKLDPDAPHEVMLT 630
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEeLRLLLLLKSEKNLTVILT 122
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
507-692 |
3.22e-12 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 69.63 E-value: 3.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 507 VILMVGVNGVGKTTTIGKMAKQFQAQ--GKSVMLAAGDTFRAAAVEQLQVWGERNDIPViaqHTgADSASVVFDAFQaaQ 584
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQhaPRDVALVTTDTQRVGGREQLHSYGRQLGIAV---HE-ADSAESLLDLLE--R 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 585 ARDVDVLIADTAGRLQNKDNLMQELE--KIARVMKKLdpdaphevmLTIDAGTGQNAISQVKLFDQAVGLTGITLTKLDG 662
Cdd:PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNwlRAARQVTSL---------LVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDE 496
|
170 180 190
....*....|....*....|....*....|.
gi 1176382922 663 TAKGGVIFAVADQFKMPIRYIGVGESI-DDL 692
Cdd:PRK12727 497 TGRFGSALSVVVDHQMPITWVTDGQRVpDDL 527
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
82-343 |
3.41e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 3.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 82 LAKEQAE-REEAERLAKEQAEREEA-ARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVAR 159
Cdd:COG1196 241 LEELEAElEELEAELEELEAELAELeAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 160 LAKEQAEREEAERLAKEEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLA 239
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 240 KEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKE 319
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260
....*....|....*....|....
gi 1176382922 320 KAEREEAARLAKEQAEREEAARLA 343
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYE 504
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-338 |
3.58e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.17 E-value: 3.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 15 KSDKKQQEAEREAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAERLAKEQAEREEAER 94
Cdd:PTZ00121 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 95 LAKEQAEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEAERLA 174
Cdd:PTZ00121 1410 LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 175 KEEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKE--QAEREEAARLA 252
Cdd:PTZ00121 1490 KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEElkKAEEKKKAEEA 1569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 253 KEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEKAEREEAARLAK- 331
Cdd:PTZ00121 1570 KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKa 1649
|
....*..
gi 1176382922 332 EQAEREE 338
Cdd:PTZ00121 1650 EELKKAE 1656
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
96-409 |
6.02e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.40 E-value: 6.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 96 AKEQAEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEAERLAK 175
Cdd:PTZ00121 1204 AARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADEL 1283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 176 EEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKeQAEREEAARLAKEQ 255
Cdd:PTZ00121 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA-KAEAEAAADEAEAA 1362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 256 AEREEAARLAKEQAEREeaARLAKEQAEREEAARLAKEQAE--REEAARLAKEQAEREEAARLAKEKAEREEAARLAKEQ 333
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAKKK--ADAAKKKAEEKKKADEAKKKAEedKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKA 1440
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1176382922 334 AEREEAARLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERQAQEQEKPKKKGFFAR 409
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
507-691 |
9.84e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 67.45 E-value: 9.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 507 VILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAqhtgADSASVVFDAFQAAQAR 586
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV----ATSPAELEEAVQYMTYV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 587 D-VDVLIADTAGRlqnkdNLMQElEKIARVMKKLDPDAPHEVMLTIDAGTGQNAISQVKLFDQAVGLTGITLTKLDGTAK 665
Cdd:PRK12726 284 NcVDHILIDTVGR-----NYLAE-ESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTR 357
|
170 180
....*....|....*....|....*.
gi 1176382922 666 GGVIFAVADQFKMPIRYIGVGESIDD 691
Cdd:PRK12726 358 IGDLYTVMQETNLPVLYMTDGQNITE 383
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
18-341 |
2.50e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.47 E-value: 2.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 18 KKQQEAER--EAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAErlAKEQAEREEAERL 95
Cdd:PTZ00121 1230 KKAEEAKKdaEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE--AKKAEEKKKADEA 1307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 96 AKEQAEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQaEGEEVARLAKEQAEREEAERLAK 175
Cdd:PTZ00121 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE-EKAEAAEKKKEEAKKKADAAKKK 1386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 176 EEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEqaereeaervAKEQAEREEAARLAKEQAEREEAARLAKEQ 255
Cdd:PTZ00121 1387 AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK----------AEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 256 AEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEKAEREEaARLAKEQAE 335
Cdd:PTZ00121 1457 KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADE-AKKAEEAKK 1535
|
....*.
gi 1176382922 336 REEAAR 341
Cdd:PTZ00121 1536 ADEAKK 1541
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
502-689 |
4.11e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 65.31 E-value: 4.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 502 NKKPFVILMVGVNGVGKTTTIGKMAKQF----QAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASvvf 577
Cdd:PRK12723 171 NLKKRVFILVGPTGVGKTTTIAKLAAIYginsDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKE--- 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 578 dafQAAQARDVDVLIADTAGRlQNKDNLmqELEKIARVMKKLDPDAphEVMLTIDAGTGQNAISQVKLFDQAVGLTGITL 657
Cdd:PRK12723 248 ---EITQSKDFDLVLVDTIGK-SPKDFM--KLAEMKELLNACGRDA--EFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIF 319
|
170 180 190
....*....|....*....|....*....|..
gi 1176382922 658 TKLDGTAKGGVIFAVADQFKMPIRYIGVGESI 689
Cdd:PRK12723 320 TKLDETTCVGNLISLIYEMRKEVSYVTDGQIV 351
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
18-341 |
4.34e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.70 E-value: 4.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 18 KKQQEAEREAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAERLAKEQaereeaerlak 97
Cdd:PTZ00121 1219 KAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAE----------- 1287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 98 eqaEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEAERLAKEE 177
Cdd:PTZ00121 1288 ---EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 178 AEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAER-EEAARLAKEQAEREEAARLAKEQA 256
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKaDEAKKKAEEKKKADEAKKKAEEAK 1444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 257 EREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEKAEREEAARLAKEQAER 336
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
|
....*
gi 1176382922 337 EEAAR 341
Cdd:PTZ00121 1525 DEAKK 1529
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
508-689 |
7.16e-11 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 65.09 E-value: 7.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 508 ILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHtgaDSASVVFDAFQAAQARD 587
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEAR 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 588 VDVLIADTAGRlqnKDNLMQELEKIARVMKKLDPDApheVMLTIDAGTGQNAISQVKLFDQAVGLTGITLTKLDGTAKGG 667
Cdd:PRK11889 321 VDYILIDTAGK---NYRASETVEEMIETMGQVEPDY---ICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSG 394
|
170 180
....*....|....*....|..
gi 1176382922 668 VIFAVADQFKMPIRYIGVGESI 689
Cdd:PRK11889 395 ELLKIPAVSSAPIVLMTDGQDV 416
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
442-691 |
1.19e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 63.97 E-value: 1.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 442 LETQLLTADIGVETTMKLIDNLTDAADRKQLkdgEALYDLMKQEMADILK--DAEKPLEipanKKPFVILMVGVNGVGKT 519
Cdd:PRK14722 79 LTKYLFAAGFSAQLVRMIVDNLPEGEGYDTL---DAAADWAQSVLAANLPvlDSEDALM----ERGGVFALMGPTGVGKT 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 520 TTIGKMAKQ--FQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVVfdafqaAQARDVDVLIADTAG 597
Cdd:PRK14722 152 TTTAKLAARcvMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL------AELRNKHMVLIDTIG 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 598 RLQNKDNLMQELEKIArvmkklDPDAPHEVMLTIDAGTGQNAISQV-KLFDQAVG--------LTGITLTKLDGTAKGGV 668
Cdd:PRK14722 226 MSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVvQAYRSAAGqpkaalpdLAGCILTKLDEASNLGG 299
|
250 260
....*....|....*....|...
gi 1176382922 669 IFAVADQFKMPIRYIGVGESIDD 691
Cdd:PRK14722 300 VLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| PTZ00266 |
PTZ00266 |
NIMA-related protein kinase; Provisional |
225-323 |
2.85e-10 |
|
NIMA-related protein kinase; Provisional
Pssm-ID: 173502 [Multi-domain] Cd Length: 1021 Bit Score: 63.99 E-value: 2.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 225 VAKEQAEReeaARLAKEQAERE-------EAARLakEQAEREEAARLAKEQAEREEAARLAKEQAEREeaaRLAKEQAER 297
Cdd:PTZ00266 430 VDKDHAER---ARIEKENAHRKalemkilEKKRI--ERLEREERERLERERMERIERERLERERLERE---RLERDRLER 501
|
90 100
....*....|....*....|....*.
gi 1176382922 298 EEAARLAKEQAEREEAARLakEKAER 323
Cdd:PTZ00266 502 DRLDRLERERVDRLERDRL--EKARR 525
|
|
| PTZ00266 |
PTZ00266 |
NIMA-related protein kinase; Provisional |
248-344 |
2.88e-10 |
|
NIMA-related protein kinase; Provisional
Pssm-ID: 173502 [Multi-domain] Cd Length: 1021 Bit Score: 63.99 E-value: 2.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 248 AARLAKEQAEReeaARLAKEQAERE-------EAARLakEQAEREEAARLAKEQAEREEAARLAKEQAEREeaaRLAKEK 320
Cdd:PTZ00266 427 GGRVDKDHAER---ARIEKENAHRKalemkilEKKRI--ERLEREERERLERERMERIERERLERERLERE---RLERDR 498
|
90 100
....*....|....*....|....
gi 1176382922 321 AEREEAARLAKEQAEREEAARLAK 344
Cdd:PTZ00266 499 LERDRLDRLERERVDRLERDRLEK 522
|
|
| PTZ00266 |
PTZ00266 |
NIMA-related protein kinase; Provisional |
235-331 |
3.33e-10 |
|
NIMA-related protein kinase; Provisional
Pssm-ID: 173502 [Multi-domain] Cd Length: 1021 Bit Score: 63.60 E-value: 3.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 235 AARLAKEQAEReeaARLAKEQAERE-------EAARLakEQAEREEAARLAKEQAEREEAARLAKEQAEREeaaRLAKEQ 307
Cdd:PTZ00266 427 GGRVDKDHAER---ARIEKENAHRKalemkilEKKRI--ERLEREERERLERERMERIERERLERERLERE---RLERDR 498
|
90 100
....*....|....*....|....
gi 1176382922 308 AEREEAARLAKEKAEREEAARLAK 331
Cdd:PTZ00266 499 LERDRLDRLERERVDRLERDRLEK 522
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
508-689 |
3.95e-10 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 61.30 E-value: 3.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 508 ILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHtgaDSASVVFDAFQAAQARD 587
Cdd:PRK06731 78 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEAR 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 588 VDVLIADTAGRLQNKDnlmQELEKIARVMKKLDPDApheVMLTIDAGTGQNAISQVKLFDQAVGLTGITLTKLDGTAKGG 667
Cdd:PRK06731 155 VDYILIDTAGKNYRAS---ETVEEMIETMGQVEPDY---ICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSG 228
|
170 180
....*....|....*....|..
gi 1176382922 668 VIFAVADQFKMPIRYIGVGESI 689
Cdd:PRK06731 229 ELLKIPAVSSAPIVLMTDGQDV 250
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
98-400 |
5.62e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 5.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 98 EQAEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEAERLAKEE 177
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEE 1300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 178 AEREEAARLAKEQAEGEEAARlAKEQAEREEAERLAKEQAEREEAERVAKeqAEREEAARLAKEQAEREEAARLAKEQAE 257
Cdd:PTZ00121 1301 KKKADEAKKKAEEAKKADEAK-KKAEEAKKKADAAKKKAEEAKKAAEAAK--AEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 258 R--EEAARLAKEQAEREEAARLAKEQAER-EEAARLAKEQAEREEAARLAKEQAEREEAARLAKEKAEREEAARLAKEQA 334
Cdd:PTZ00121 1378 KkaDAAKKKAEEKKKADEAKKKAEEDKKKaDELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1176382922 335 EREEAARLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERQAQEQEK 400
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
500-689 |
7.30e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 61.90 E-value: 7.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 500 PANKKPfVILMVGVNGVGKTTTIGKMA-KQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTgadsasvvFD 578
Cdd:PRK12724 219 GKNQRK-VVFFVGPTGSGKTTSIAKLAaKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD--------IK 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 579 AFQAAQARDVDVLI-ADTAGRLQNKdnlMQELEKIARVMKKLDPDAPHEVMLTIDAGTGQNAISQVKLFDQAVGLTGITL 657
Cdd:PRK12724 290 KFKETLARDGSELIlIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILL 366
|
170 180 190
....*....|....*....|....*....|..
gi 1176382922 658 TKLDGTAKGGVIFAVADQFKMPIRYIGVGESI 689
Cdd:PRK12724 367 TKLDEADFLGSFLELADTYSKSFTYLSVGQEV 398
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
18-344 |
8.61e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.47 E-value: 8.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 18 KKQQEAEREAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAERlaKEQAEREEAERLAK 97
Cdd:PTZ00121 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK--KKEEAKKKADAAKK 1385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 98 EQAEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEAERLAKEE 177
Cdd:PTZ00121 1386 KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 178 AEREEAARLAKEQAE-GEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAK-EQAEREEAARLAKEQ 255
Cdd:PTZ00121 1466 AEEAKKADEAKKKAEeAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKaEEAKKADEAKKAEEK 1545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 256 AEREEAARLAK-EQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAK-----EQAEREEAARLAKEKAEREEAARL 329
Cdd:PTZ00121 1546 KKADELKKAEElKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEvmklyEEEKKMKAEEAKKAEEAKIKAEEL 1625
|
330
....*....|....*
gi 1176382922 330 AKEQAEREEAARLAK 344
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKK 1640
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
19-343 |
1.18e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 19 KQQEAEREAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAERLAKEQAEREEAERLAKE 98
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 99 QAEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEAERLAKEEA 178
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 179 EREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQAEREEAARLAKEQAER 258
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 259 EEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEKAEREEAARLAKEQAEREE 338
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538
|
....*
gi 1176382922 339 AARLA 343
Cdd:COG1196 539 ALEAA 543
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-508 |
1.87e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 1.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 15 KSDKKQQEAEREAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAERLAKEQAEREEAER 94
Cdd:PTZ00121 1279 KADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 95 LAKEQaEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEAERLA 174
Cdd:PTZ00121 1359 AEAAE-EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 175 KEEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQAEREEAARLAKE 254
Cdd:PTZ00121 1438 KKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 255 QAEREEAARLAK-EQAEREEAARLAKE--------------QAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKE 319
Cdd:PTZ00121 1518 AEEAKKADEAKKaEEAKKADEAKKAEEkkkadelkkaeelkKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 320 KAEREEAARLAKEQAEREEAARL-AKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERQAQEQ 398
Cdd:PTZ00121 1598 MKLYEEEKKMKAEEAKKAEEAKIkAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 399 EKPKKKGFFARLKQGLLKTKTNIGSGFANIFRGKKIDDELFEDLETQLLTADIGVETTMKLIDNLTDAADRKQLKDGEal 478
Cdd:PTZ00121 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE-- 1755
|
490 500 510
....*....|....*....|....*....|
gi 1176382922 479 ydlmKQEMADILKDAEKPLEIPANKKPFVI 508
Cdd:PTZ00121 1756 ----KKKIAHLKKEEEKKAEEIRKEKEAVI 1781
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
226-338 |
2.16e-09 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 56.59 E-value: 2.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 226 AKEQAEREEAARLAKEQAER----EEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEaarlaKEQAEREEAA 301
Cdd:pfam05672 23 AREQREREEQERLEKEEEERlrkeELRRRAEEERARREEEARRLEEERRREEEERQRKAEEEAEE-----REQREQEEQE 97
|
90 100 110
....*....|....*....|....*....|....*..
gi 1176382922 302 RLAKEQAEREEAARLAKEKAEREEAARLAKEQAEREE 338
Cdd:pfam05672 98 RLQKQKEEAEAKAREEAERQRQEREKIMQQEEQERLE 134
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
421-486 |
2.24e-09 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 54.40 E-value: 2.24e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1176382922 421 IGSGFANIFRGKKIDDELFED----LETQLLTADIGVETTMKLIDNLTDAA-DRKQLKDGEALYDLMKQEM 486
Cdd:pfam02881 5 LSSLFKGLRGKGKIDEEDLEEalkeLEEALLEADVGVEVVKKIIERLREKAvGEKKLKPPQEVKKILKEEL 75
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
19-343 |
4.66e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 4.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 19 KQQEAEREAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAERLAKEQAEREEAERLAKE 98
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 99 QAEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERL----------AKEQAEGEEVARLAKEQAERE 168
Cdd:COG1196 500 EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALqnivveddevAAAAIEYLKAAKAGRATFLPL 579
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 169 EAERLAKEEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQAEREEA 248
Cdd:COG1196 580 DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG 659
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 249 ARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEKAEREEAAR 328
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
330
....*....|....*
gi 1176382922 329 LAKEQAEREEAARLA 343
Cdd:COG1196 740 ELLEEEELLEEEALE 754
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
98-403 |
5.09e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 5.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 98 EQAEREEAARLAkeqAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEAERLAKEE 177
Cdd:PTZ00121 1173 EDAKKAEAARKA---EEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEER 1249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 178 AEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQAEREEAARLAKEQAE 257
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 258 REEAARLAKEQAEREEAARLAKEQAEREEAarlaKEQAEREEAARLAKEQAEREeaARLAKEKAEREEAARLAKEQAE-- 335
Cdd:PTZ00121 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEA----EAAEEKAEAAEKKKEEAKKK--ADAAKKKAEEKKKADEAKKKAEed 1403
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1176382922 336 REEAARLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERQAQEQEKPKK 403
Cdd:PTZ00121 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
233-345 |
1.15e-08 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 54.66 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 233 EEAARLAKEQAEREEAARLAKEQAER----EEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEaarlaKEQA 308
Cdd:pfam05672 17 AEKRRQAREQREREEQERLEKEEEERlrkeELRRRAEEERARREEEARRLEEERRREEEERQRKAEEEAEE-----REQR 91
|
90 100 110
....*....|....*....|....*....|....*..
gi 1176382922 309 EREEAARLAKEKAEREEAARLAKEQAEREEAARLAKE 345
Cdd:pfam05672 92 EQEEQERLQKQKEEAEAKAREEAERQRQEREKIMQQE 128
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
226-340 |
2.25e-08 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 57.19 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 226 AKEQAEREEAARLAKEQAERE-EAARLAKEQAEREEAARLAKEQAEREEAAR---LAKEQAEREEAARLAKEQAEREEAA 301
Cdd:COG2268 213 EIAIAQANREAEEAELEQEREiETARIAEAEAELAKKKAEERREAETARAEAeaaYEIAEANAEREVQRQLEIAEREREI 292
|
90 100 110
....*....|....*....|....*....|....*....
gi 1176382922 302 RLAKEQAEREEaARLAKEKAEREEAARLAKEQAEREEAA 340
Cdd:COG2268 293 ELQEKEAEREE-AELEADVRKPAEAEKQAAEAEAEAEAE 330
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
17-368 |
3.41e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 3.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 17 DKKQQEAEREAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAERLAKEQAEREEAERLA 96
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 97 KEQAEREEA------ARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEA 170
Cdd:COG1196 470 EEAALLEAAlaelleELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQ 549
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 171 ERLAKEEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQAEREEAAR 250
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVA 629
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 251 LAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEKAEREEAARLA 330
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
330 340 350
....*....|....*....|....*....|....*...
gi 1176382922 331 KEQAEREEAARLAKEQAEREEAERLAKEQAEREEAERL 368
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
18-389 |
4.45e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 4.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 18 KKQQEAEREAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAERLAKEQAEREEAERLAK 97
Cdd:COG1196 397 ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 98 EQAEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEAERLAKEE 177
Cdd:COG1196 477 AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDD 556
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 178 AEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQA--EREEAARLAKEQ 255
Cdd:COG1196 557 EVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLlgRTLVAARLEAAL 636
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 256 AEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEKAEREEAARLAKEQAE 335
Cdd:COG1196 637 RRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1176382922 336 REEAARLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERLAKEQAERE 389
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE 770
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
20-343 |
4.27e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 4.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 20 QQEAEREAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAereeaervAKEQAEREEAERLAKEQAEREEAERLAKEQ 99
Cdd:COG1196 264 ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA--------RLEERRRELEERLEELEEELAELEEELEEL 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 100 AEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEaerlAKEQAEGEEVARLAKEQAEREEAERLAKEEAE 179
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE----ELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 180 REEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQAEREEAARLAKEQAERE 259
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 260 EAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEKAEREEAARLAKEQAEREEA 339
Cdd:COG1196 492 RLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKA 571
|
....
gi 1176382922 340 ARLA 343
Cdd:COG1196 572 GRAT 575
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
507-705 |
4.76e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 53.27 E-value: 4.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 507 VILMVGVNGVGKTTTIGKMAKQFQAQ--GKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADsasvVFDAFQAAQ 584
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVARegADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD----LRFALAALG 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 585 ARDVdVLIaDTAGRLQNKDNLMQELEKIARVmkkldpDAPHEVMLTIDA---GTGQNAISQVKLFDQAVGLTGITLTKLD 661
Cdd:PRK14723 263 DKHL-VLI-DTVGMSQRDRNVSEQIAMLCGV------GRPVRRLLLLNAashGDTLNEVVHAYRHGAGEDVDGCIITKLD 334
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1176382922 662 GTAKGGVIFAVADQFKMPIRYIGVGESI-DDLRTFKSDDFIEALF 705
Cdd:PRK14723 335 EATHLGPALDTVIRHRLPVHYVSTGQKVpEHLELAQADELVDRAF 379
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
96-404 |
5.27e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 5.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 96 AKEQAEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEAERLAK 175
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAED 1162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 176 EEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAkEQAEREEAARLAKEQ 255
Cdd:PTZ00121 1163 ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKA-EAVKKAEEAKKDAEE 1241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 256 AEREEAARLAKEQAEREEA---------ARLAKEQAEREEAARLAKEQAEREEAaRLAKEQAEREEAARLAKEKAEREEA 326
Cdd:PTZ00121 1242 AKKAEEERNNEEIRKFEEArmahfarrqAAIKAEEARKADELKKAEEKKKADEA-KKAEEKKKADEAKKKAEEAKKADEA 1320
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1176382922 327 ARLAKEQAEREEAARLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERQAQEQEKPKKK 404
Cdd:PTZ00121 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
15-341 |
6.55e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 6.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 15 KSDKKQQEAEREAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAER----EEAERVAKEQAEREEAERLAKEQAERE 90
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAarllLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 91 EAERLAKEQAEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEA 170
Cdd:COG1196 522 LAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 171 ERLAKEEAEREEAARLAKEQAEGE--EAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQAEREEA 248
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRtlVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL 681
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 249 ARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEKAEREEAAR 328
Cdd:COG1196 682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761
|
330
....*....|...
gi 1176382922 329 LAKEQAEREEAAR 341
Cdd:COG1196 762 LEELERELERLER 774
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
15-400 |
1.23e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 15 KSDKKQQEAEREAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAERLAKEQAEREEAER 94
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 95 LAKEQAEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEAERLA 174
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 175 KEEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQAEREEAARLAKE 254
Cdd:COG1196 489 AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA 568
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 255 QAErEEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEKAEREEAARLAKEQA 334
Cdd:COG1196 569 AKA-GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1176382922 335 EREEAARLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAER-LAKEQAEREEAERQAQEQEK 400
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELeLEEALLAEEEEERELAEAEE 714
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
18-356 |
1.55e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 18 KKQQEAEREAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAERLAKEQAEREEAERLAK 97
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 98 EQAEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEAERLAKEE 177
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 178 AEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQAEREEAARLAKEQAE 257
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 258 REEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEKAEREEAARLAKEQAERE 337
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
330
....*....|....*....
gi 1176382922 338 EAARLAKEQAEREEAERLA 356
Cdd:COG1196 629 AARLEAALRRAVTLAGRLR 647
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
226-341 |
1.89e-06 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 51.06 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 226 AKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARlAKEQAEREEAARlAK 305
Cdd:PRK12678 63 AAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQ-ARERRERGEAAR-RG 140
|
90 100 110
....*....|....*....|....*....|....*.
gi 1176382922 306 EQAEREEAARLAKEKAEREEAARLAKEQAEREEAAR 341
Cdd:PRK12678 141 AARKAGEGGEQPATEARADAAERTEEEERDERRRRG 176
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
101-340 |
5.33e-06 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 49.95 E-value: 5.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 101 EREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAKEQAEREEAERLAKEEAER 180
Cdd:PRK05035 463 EREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAA 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 181 EEAarlakEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREeaARLAKEQAEREEAARLAKEQAEREE 260
Cdd:PRK05035 543 ADP-----KKAAVAAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAK--AKKAAQQAASAEPEEQVAEVDPKKA 615
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 261 AARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEA-ARLAKEQAEREEAARLAKEKAEREEAArLAKEQAEREEA 339
Cdd:PRK05035 616 AVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAkARKAAQQQANAEPEEAEDPKKAAVAAA-IARAKAKKAAQ 694
|
.
gi 1176382922 340 A 340
Cdd:PRK05035 695 Q 695
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
15-400 |
6.96e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 6.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 15 KSDKKQQEAEREAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAERLAKEQAEREEAER 94
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 95 LAKEQAEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEE--VARLAKEQAEREEAER 172
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAalAELLEELAEAAARLLL 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 173 LAKEEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQAEREEAAR-- 250
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRat 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 251 -LAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEKAEREEAARL 329
Cdd:COG1196 576 fLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG 655
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1176382922 330 AKEQAEREEAARLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERQAQEQEK 400
Cdd:COG1196 656 GSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
225-343 |
9.58e-06 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 48.79 E-value: 9.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 225 VAKEQAEREEAARLAKEQAEREEAAR--LAKEQAEREEAARLAKEQAEREEaarlakEQAEREEAARLAKEQAEREEAAR 302
Cdd:pfam15709 350 VERKRREQEEQRRLQQEQLERAEKMReeLELEQQRRFEEIRLRKQRLEEER------QRQEEEERKQRLQLQAAQERARQ 423
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1176382922 303 laKEQAEREEAARLAKEKAEREEAARLAKEQAEREEAARLA 343
Cdd:pfam15709 424 --QQEEFRRKLQELQRKKQQEEAERAEAEKQRQKELEMQLA 462
|
|
| TolA |
COG3064 |
Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis]; |
213-675 |
1.39e-05 |
|
Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442298 [Multi-domain] Cd Length: 485 Bit Score: 48.11 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 213 AKEQAEREEAERVAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAarlAKEQAEREEAARLAK 292
Cdd:COG3064 1 AQEALEEKAAEAAAQERLEQAEAEKRAAAEAEQKAKEEAEEERLAELEAKRQAEEEAREAKA---EAEQRAAELAAEAAK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 293 EQAEREEAARLAKEQAEREEAARLAK-EKAEREEAARLAKEQAEREEAARLAKEQAEREEAERLAKEQAEREEAERLAKE 371
Cdd:COG3064 78 KLAEAEKAAAEAEKKAAAEKAKAAKEaEAAAAAEKAAAAAEKEKAEEAKRKAEEEAKRKAEEERKAAEAEAAAKAEAEAA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 372 QAEREEAERLAKEQAEREEAERQAQEQEKPKKKGFFARLKQGLLKTKTNIGSGFANIFRGKKIDDELFEDLETQLLTADI 451
Cdd:COG3064 158 RAAAAAAAAAAAAAARAAAGAAAALVAAAAAAVEAADTAAAAAAALAAAAAAAAADAALLALAVAARAAAASREAALAAV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 452 GVETTMKLIDNLTDAADRKQLKDGEALYDLMKQEMADILKDAEkpleipankkPFVILMVGVNGVGKTTTIGKMAKQFQA 531
Cdd:COG3064 238 EATEEAALGGAEEAADLAAVGVLGAALAAAAAGAAALSSGLVV----------VAAALAGLAAAAAGLVLDDSAALAAEL 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 532 QGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVVFDAFQAAQARDVDVLIADTAGRLQNKDNLMQELEK 611
Cdd:COG3064 308 LGAVAAEEAVLAAAAAAGALVVRGGGAASLEAALSLLAAGAAAAAAGAGALATGALGDALAAEAAGALLLGKLADVEEAA 387
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1176382922 612 IARVMKKLDPDAPHEVMLTIDAGTGQNAISQVKLFDQAVGLTGITLTKLDGTAKGGVIFAVADQ 675
Cdd:COG3064 388 GAGILAAAGGGGLLGLRLDLGAALLEAASAVELRVLLALAGAAGAVVALLVKLVADLAGGLVGI 451
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
230-356 |
2.12e-05 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 47.56 E-value: 2.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 230 AEREEAARLAKEQAEREEAarlaKEQAEREEAARLAKEQAERE-EAARLAKEQAEreeaarLAKEQAEREEAARLAKeqA 308
Cdd:COG2268 195 AEIIRDARIAEAEAERETE----IAIAQANREAEEAELEQEREiETARIAEAEAE------LAKKKAEERREAETAR--A 262
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1176382922 309 EREEAARLAKEKAEREEAARLakEQAEREEAARLAKEQAEREEAERLA 356
Cdd:COG2268 263 EAEAAYEIAEANAEREVQRQL--EIAEREREIELQEKEAEREEAELEA 308
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
228-344 |
2.36e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 2.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 228 EQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAER-EEAARLAKE 306
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARlEALLAALGL 373
|
90 100 110
....*....|....*....|....*....|....*...
gi 1176382922 307 QAEREEAARLAKEKAEREEAARLAKEQAEREEAARLAK 344
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLEALEEELEALEEALAEAE 411
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
150-341 |
2.59e-05 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 47.15 E-value: 2.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 150 EQAEGEEVARLAKEQAEREEAERLAKEEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQ 229
Cdd:TIGR02794 45 PGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 230 AEREEAARLAKEQAEREEAArlAKEQAEREEAARLAKEQAEREEAARLAKEQAERE-EAARLAKEQAEREEAARLAKEQA 308
Cdd:TIGR02794 125 KAKQAAEAKAKAEAEAERKA--KEEAAKQAEEEAKAKAAAEAKKKAEEAKKKAEAEaKAKAEAEAKAKAEEAKAKAEAAK 202
|
170 180 190
....*....|....*....|....*....|...
gi 1176382922 309 EREEAARLAKEKAEREEAARLAKEQAEREEAAR 341
Cdd:TIGR02794 203 AKAAAEAAAKAEAEAAAAAAAEAERKADEAELG 235
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
15-400 |
3.80e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 15 KSDKKQQEAEREAARLAEEQAQREEAERLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAERLAKEQAEREEAER 94
Cdd:COG1196 311 RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 95 LAKEQAE------------REEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKEQAEGEEVARLAK 162
Cdd:COG1196 391 ALRAAAElaaqleeleeaeEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 163 EQAEREEAERLAKEEAEREEAARLAKEQAEGEEAARLA--KEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAK 240
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEgvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 241 EQAEREEAARLAKEQAEREEAAR---LAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLA 317
Cdd:COG1196 551 IVVEDDEVAAAAIEYLKAAKAGRatfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAA 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 318 KEKAEREEAARLAKEQAEREEAARLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERQAQE 397
Cdd:COG1196 631 RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
...
gi 1176382922 398 QEK 400
Cdd:COG1196 711 EAE 713
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
96-403 |
4.28e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 4.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 96 AKEQAEREEAARLAKEQAEREEAERVAKELAEREEAERLAKEQAEREEAERLAKeQAEGEEVARLAKEQAEREEAERLAK 175
Cdd:PTZ00121 1117 AEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEAR-KAEDAKKAEAARKAEEVRKAEELRK 1195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 176 EEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAERE----EAARLA----KEQAEREE 247
Cdd:PTZ00121 1196 AEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEirkfEEARMAhfarRQAAIKAE 1275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 248 AARLAKEQAEREEA-----ARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEKA- 321
Cdd:PTZ00121 1276 EARKADELKKAEEKkkadeAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAa 1355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 322 --------EREEAARLAKEQAEREEAARLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAER 393
Cdd:PTZ00121 1356 adeaeaaeEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
|
330
....*....|
gi 1176382922 394 QAQEQEKPKK 403
Cdd:PTZ00121 1436 AKKKAEEAKK 1445
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
225-344 |
5.09e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 5.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 225 VAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAER-EEAARLAKEQA--EREEAA 301
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARlEALLAALGLPLpaSAEEFA 383
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1176382922 302 RLAKEQAEREEAARLAKEKAEREEAARLAKEQAEREEAARLAK 344
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEA 426
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
226-370 |
5.23e-05 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 45.99 E-value: 5.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 226 AKEQAEREEAARLAKEQAEREEAARLAKEQAERE-EAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAAR-- 302
Cdd:TIGR02794 73 LEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQaEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAERKAKEEAAKqa 152
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1176382922 303 ----LAKEQAEREEAARLAKEKAERE-EAARLAKEQAEREEAARLAKEQAEREEAERLAKEQAEREEAERLAK 370
Cdd:TIGR02794 153 eeeaKAKAAAEAKKKAEEAKKKAEAEaKAKAEAEAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEA 225
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
227-344 |
6.42e-05 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 45.95 E-value: 6.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 227 KEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAE-REEAARLAKEQAEREEAARLAK 305
Cdd:PRK09510 118 KQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEaAKKAAAEAKKKAEAEAAAKAAA 197
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1176382922 306 EQAEREE------AARLAKEKAEREEAARLAKEQAEREEAARLAK 344
Cdd:PRK09510 198 EAKKKAEaeakkkAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAA 242
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
226-341 |
6.90e-05 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 46.10 E-value: 6.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 226 AKEQAEREEAARLAKEQAEREEAARlAKEQAEREEAARLAKEQA--EREEAARLAKEQAEREEAAR--LAKEQAEREEAA 301
Cdd:pfam15709 311 SEEERSEEDPSKALLEKREQEKASR-DRLRAERAEMRRLEVERKrrEQEEQRRLQQEQLERAEKMReeLELEQQRRFEEI 389
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1176382922 302 RLAKEQAEREEaarlakEKAEREEAARLAKEQAEREEAAR 341
Cdd:pfam15709 390 RLRKQRLEEER------QRQEEEERKQRLQLQAAQERARQ 423
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
226-340 |
6.98e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 6.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 226 AKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAaRLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAK 305
Cdd:COG4913 267 ARERLAELEYLRAALRLWFAQRRLELLEAELEELRA-ELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLER 345
|
90 100 110
....*....|....*....|....*....|....*.
gi 1176382922 306 EQAEREEAARLAKEKAER-EEAARLAKEQAEREEAA 340
Cdd:COG4913 346 EIERLERELEERERRRARlEALLAALGLPLPASAEE 381
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
226-370 |
1.03e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 45.25 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 226 AKEQAEREEAARLAKEQAEREEAarLAKEQAERE-EAARLAKEQAEreeaarLAKEQAEREEAARLAKeqAEREEAARLA 304
Cdd:COG2268 202 RIAEAEAERETEIAIAQANREAE--EAELEQEREiETARIAEAEAE------LAKKKAEERREAETAR--AEAEAAYEIA 271
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1176382922 305 KEQAEREEAARLakEKAEREEAARLAKEQAEREEAArlakeqaerEEAERLAKEQAEREEAERLAK 370
Cdd:COG2268 272 EANAEREVQRQL--EIAEREREIELQEKEAEREEAE---------LEADVRKPAEAEKQAAEAEAE 326
|
|
| TolA |
COG3064 |
Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis]; |
188-664 |
1.09e-04 |
|
Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442298 [Multi-domain] Cd Length: 485 Bit Score: 45.42 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 188 KEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAER--EEAARLAKEQAErEEAARLAKEQAEREEAARLA 265
Cdd:COG3064 7 EKAAEAAAQERLEQAEAEKRAAAEAEQKAKEEAEEERLAELEAKRqaEEEAREAKAEAE-QRAAELAAEAAKKLAEAEKA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 266 KEQAEREEAARLAKEQAEREEAARLAKEQAE-REEAARLAKEQAEREEAARLAKEKAEREEAARLAKEQAEREEAARLAK 344
Cdd:COG3064 86 AAEAEKKAAAEKAKAAKEAEAAAAAEKAAAAaEKEKAEEAKRKAEEEAKRKAEEERKAAEAEAAAKAEAEAARAAAAAAA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 345 EQAEREEAERLAKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERQAQEQEKPKKKGFFARLKQGLLKTKTNIGSG 424
Cdd:COG3064 166 AAAAAAARAAAGAAAALVAAAAAAVEAADTAAAAAAALAAAAAAAAADAALLALAVAARAAAASREAALAAVEATEEAAL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 425 FANIFRGKKIDDELFEDLETQLLTADIGVETTMKLIDNLTDAADRKQLKDGEALYDLMKQEMADILKDAEKPLEIPANKK 504
Cdd:COG3064 246 GGAEEAADLAAVGVLGAALAAAAAGAAALSSGLVVVAAALAGLAAAAAGLVLDDSAALAAELLGAVAAEEAVLAAAAAAG 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 505 PFVILMVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVVFDAFQAAQ 584
Cdd:COG3064 326 ALVVRGGGAASLEAALSLLAAGAAAAAAGAGALATGALGDALAAEAAGALLLGKLADVEEAAGAGILAAAGGGGLLGLRL 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 585 ARDVDVLIADTAGRLQNKDNLMQELEKIARVMKKLDPDAPHEVMLTIDAGTGQNAISQVKLFDQAVGLTGITLTKLDGTA 664
Cdd:COG3064 406 DLGAALLEAASAVELRVLLALAGAAGAVVALLVKLVADLAGGLVGIGKALTGDADALLGILKAVALDGGAVLADLLLLGG 485
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
189-312 |
1.26e-04 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 42.72 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 189 EQAEGEEAARLAKEQAEREEAERLAKEqaereeaerVAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEaarlaKEQ 268
Cdd:pfam05672 25 EQREREEQERLEKEEEERLRKEELRRR---------AEEERARREEEARRLEEERRREEEERQRKAEEEAEE-----REQ 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1176382922 269 AEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREE 312
Cdd:pfam05672 91 REQEEQERLQKQKEEAEAKAREEAERQRQEREKIMQQEEQERLE 134
|
|
| PLN02316 |
PLN02316 |
synthase/transferase |
251-323 |
1.64e-04 |
|
synthase/transferase
Pssm-ID: 215180 [Multi-domain] Cd Length: 1036 Bit Score: 45.25 E-value: 1.64e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1176382922 251 LAKEQaeREEAARLAKEQAEREeaaRLAKEQAEREEAArlAKEQAEREEAARlakEQAEREEAARLAKEKAER 323
Cdd:PLN02316 250 LLEEK--RRELEKLAKEEAERE---RQAEEQRRREEEK--AAMEADRAQAKA---EVEKRREKLQNLLKKASR 312
|
|
| PTZ00491 |
PTZ00491 |
major vault protein; Provisional |
226-344 |
1.96e-04 |
|
major vault protein; Provisional
Pssm-ID: 240439 [Multi-domain] Cd Length: 850 Bit Score: 44.62 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 226 AKEQAEREEAarLAKEQAEREEAARLA-KEQAEREEAAR-LAKEQAERE--EAARLAKEQAEREEAARLAKEQAEReEAA 301
Cdd:PTZ00491 663 SQEAAARHQA--ELLEQEARGRLERQKmHDKAKAEEQRTkLLELQAESAavESSGQSRAEALAEAEARLIEAEAEV-EQA 739
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1176382922 302 RLAKEQAEREEAARLAKEKAEREEAARLAKEQAE--REEAARLAK 344
Cdd:PTZ00491 740 ELRAKALRIEAEAELEKLRKRQELELEYEQAQNEleIAKAKELAD 784
|
|
| Casc1_N |
pfam15927 |
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally ... |
254-327 |
2.25e-04 |
|
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is approximately 200 amino acids in length. The family is found in association with pfam12366. There are two completely conserved residues (N and W) that may be functionally important.
Pssm-ID: 464947 [Multi-domain] Cd Length: 201 Bit Score: 43.12 E-value: 2.25e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1176382922 254 EQAEREEAARLakeQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAArLAKEKAEREEAA 327
Cdd:pfam15927 1 ARLREEEEERL---RAEEEEAERLEEERREEEEEERLAAEQDRRAEELEELKHLLEERKEA-LEKLRAEAREEA 70
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
226-340 |
2.68e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 226 AKEQAER----EEAARLAKEQAEREEAARLAKEQAEREEAARLAK--EQAEREEAARLAKEQAEREEAARLAKEQAEREE 299
Cdd:COG4913 247 AREQIELlepiRELAERYAAARERLAELEYLRAALRLWFAQRRLEllEAELEELRAELARLEAELERLEARLDALREELD 326
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1176382922 300 AARLAKEQAEREEAARLAKEKAEREEAARLAKEQAEREEAA 340
Cdd:COG4913 327 ELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEAL 367
|
|
| PTZ00266 |
PTZ00266 |
NIMA-related protein kinase; Provisional |
195-279 |
2.78e-04 |
|
NIMA-related protein kinase; Provisional
Pssm-ID: 173502 [Multi-domain] Cd Length: 1021 Bit Score: 44.34 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 195 EAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQAERE--EAARLAKEQAEREEAARLAKEQAERE 272
Cdd:PTZ00266 436 ERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERErlERERLERDRLERDRLDRLERERVDRL 515
|
....*..
gi 1176382922 273 EAARLAK 279
Cdd:PTZ00266 516 ERDRLEK 522
|
|
| PTZ00491 |
PTZ00491 |
major vault protein; Provisional |
226-337 |
4.34e-04 |
|
major vault protein; Provisional
Pssm-ID: 240439 [Multi-domain] Cd Length: 850 Bit Score: 43.85 E-value: 4.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 226 AKEQAEREEAARLA-KEQAEREEAAR-LAKEQAERE--EAARLAKEQAEREEAARLAKEQAEReEAARLAKEQAEREEAA 301
Cdd:PTZ00491 674 LLEQEARGRLERQKmHDKAKAEEQRTkLLELQAESAavESSGQSRAEALAEAEARLIEAEAEV-EQAELRAKALRIEAEA 752
|
90 100 110
....*....|....*....|....*....|....*.
gi 1176382922 302 RLAKEQAEREeaARLAKEKAEREEAARLAKEQAERE 337
Cdd:PTZ00491 753 ELEKLRKRQE--LELEYEQAQNELEIAKAKELADIE 786
|
|
| Casc1_N |
pfam15927 |
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally ... |
228-296 |
4.67e-04 |
|
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is approximately 200 amino acids in length. The family is found in association with pfam12366. There are two completely conserved residues (N and W) that may be functionally important.
Pssm-ID: 464947 [Multi-domain] Cd Length: 201 Bit Score: 41.96 E-value: 4.67e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1176382922 228 EQAEREEAARLakeQAEREEAARLAKEQAEREEAARLAKEQAEREE-----AARLAKEQAEREEAARLAKEQAE 296
Cdd:pfam15927 1 ARLREEEEERL---RAEEEEAERLEEERREEEEEERLAAEQDRRAEeleelKHLLEERKEALEKLRAEAREEAE 71
|
|
| Casc1_N |
pfam15927 |
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally ... |
241-309 |
4.67e-04 |
|
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is approximately 200 amino acids in length. The family is found in association with pfam12366. There are two completely conserved residues (N and W) that may be functionally important.
Pssm-ID: 464947 [Multi-domain] Cd Length: 201 Bit Score: 41.96 E-value: 4.67e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1176382922 241 EQAEREEAARLakeQAEREEAARLAKEQAEREEAARLAKEQAEREE-----AARLAKEQAEREEAARLAKEQAE 309
Cdd:pfam15927 1 ARLREEEEERL---RAEEEEAERLEEERREEEEEERLAAEQDRRAEeleelKHLLEERKEALEKLRAEAREEAE 71
|
|
| CCDC34 |
pfam13904 |
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ... |
227-335 |
5.40e-04 |
|
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.
Pssm-ID: 464032 [Multi-domain] Cd Length: 221 Bit Score: 42.00 E-value: 5.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 227 KEQAEREEAArlaKEQAEREEAARLAKE--------QAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAERE 298
Cdd:pfam13904 71 ELQAQKEERE---KEEQEAELRKRLAKEkyqewlqrKARQQTKKREESHKQKAAESASKSLAKPERKVSQEEAKEVLQEW 147
|
90 100 110
....*....|....*....|....*....|....*..
gi 1176382922 299 EAARLAKEQAEREEaARLAKEKAEREEAARlaKEQAE 335
Cdd:pfam13904 148 ERKKLEQQQRKREE-EQREQLKKEEEEQER--KQLAE 181
|
|
| PLN02316 |
PLN02316 |
synthase/transferase |
238-310 |
5.88e-04 |
|
synthase/transferase
Pssm-ID: 215180 [Multi-domain] Cd Length: 1036 Bit Score: 43.32 E-value: 5.88e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1176382922 238 LAKEQaeREEAARLAKEQAEREeaaRLAKEQAEREEAArlAKEQAEREEAARlakEQAEREEAARLAKEQAER 310
Cdd:PLN02316 250 LLEEK--RRELEKLAKEEAERE---RQAEEQRRREEEK--AAMEADRAQAKA---EVEKRREKLQNLLKKASR 312
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
155-344 |
5.97e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 5.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 155 EEVARLAKEQAEREEAERLAKEEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLA--KEQAEREEAERVAKEQAER 232
Cdd:pfam17380 298 QERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEerKRELERIRQEEIAMEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 233 EEAARLAKEQAEREEAARLAKEQAER-----EEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLaKEQ 307
Cdd:pfam17380 378 RELERLQMERQQKNERVRQELEAARKvkileEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRL-EEQ 456
|
170 180 190
....*....|....*....|....*....|....*...
gi 1176382922 308 AEREEAARLAKEKAERE-EAARLAKEQAEREEAARLAK 344
Cdd:pfam17380 457 ERQQQVERLRQQEEERKrKKLELEKEKRDRKRAEEQRR 494
|
|
| PLN02316 |
PLN02316 |
synthase/transferase |
231-297 |
8.33e-04 |
|
synthase/transferase
Pssm-ID: 215180 [Multi-domain] Cd Length: 1036 Bit Score: 42.94 E-value: 8.33e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1176382922 231 EREEAARLAKEQAEREeaaRLAKEQAEREEAArlAKEQAEREEAARlakEQAEREEAARLAKEQAER 297
Cdd:PLN02316 254 KRRELEKLAKEEAERE---RQAEEQRRREEEK--AAMEADRAQAKA---EVEKRREKLQNLLKKASR 312
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
225-335 |
1.16e-03 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 41.78 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 225 VAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEaARLAKEQAEREEAARLAKEQAEREEAARlAKEQAEREEAARLA 304
Cdd:COG2268 268 YEIAEANAEREVQRQLEIAEREREIELQEKEAEREE-AELEADVRKPAEAEKQAAEAEAEAEAEA-IRAKGLAEAEGKRA 345
|
90 100 110
....*....|....*....|....*....|.
gi 1176382922 305 KEQAErEEAARLAKEKAEREEAARLAKEQAE 335
Cdd:COG2268 346 LAEAW-NKLGDAAILLMLIEKLPEIAEAAAK 375
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
177-334 |
1.26e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 41.72 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 177 EAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQAE-REEAARLAKEQ 255
Cdd:PRK09510 107 EKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEaAKKAAAEAKKK 186
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1176382922 256 AEREEAARLAKEQAEREEAARLAKeqaereeAARLAKEQAEREEAARLAKEQAEREEAARLAKEKAEREEAARLAKEQA 334
Cdd:PRK09510 187 AEAEAAAKAAAEAKKKAEAEAKKK-------AAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAE 258
|
|
| PLN02316 |
PLN02316 |
synthase/transferase |
277-341 |
1.28e-03 |
|
synthase/transferase
Pssm-ID: 215180 [Multi-domain] Cd Length: 1036 Bit Score: 42.16 E-value: 1.28e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1176382922 277 LAKEQaeREEAARLAKEQAEREeaaRLAKEQAEREEAArlAKEKAEREEAARlakEQAEREEAAR 341
Cdd:PLN02316 250 LLEEK--RRELEKLAKEEAERE---RQAEEQRRREEEK--AAMEADRAQAKA---EVEKRREKLQ 304
|
|
| ERM_helical |
pfam20492 |
Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related ... |
227-336 |
1.60e-03 |
|
Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related proteins, ezrin, radixin and moesin. Ezrin was first identified as a constituent of microvilli, radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions, and moesin as a heparin binding protein. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain, an extended alpha-helical domain and a charged C-terminal domain (pfam00769). Ezrin, radixin and merlin also contain a polyproline linker region between the helical and C-terminal domains. The N-terminal domain is highly conserved and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily, designated the FERM domain. ERM proteins crosslink actin filaments with plasma membranes. They co-localize with CD44 at actin filament plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains. This is the alpha-helical domain, which is involved in intramolecular masking of protein-protein interaction sites, regulating the activity of this proteins.
Pssm-ID: 466641 [Multi-domain] Cd Length: 120 Bit Score: 38.75 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 227 KEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAER--EEAARLAKEQAEREEAARLAKEQAEREEAARLA 304
Cdd:pfam20492 1 REEAEREKQELEERLKQYEEETKKAQEELEESEETAEELEEERRQaeEEAERLEQKRQEAEEEKERLEESAEMEAEEKEQ 80
|
90 100 110
....*....|....*....|....*....|....*
gi 1176382922 305 KEQAERE---EAARLAKEKAEREEAARLAKEQAER 336
Cdd:pfam20492 81 LEAELAEaqeEIARLEEEVERKEEEARRLQEELEE 115
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
228-383 |
1.69e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 41.33 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 228 EQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQ 307
Cdd:PRK09510 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAE 172
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1176382922 308 AE-REEAARLAKEKAEREEAARLAKEQAEREEAARLAKEQAereeaerLAKEQAEREEAERLAKEQAEREEAERLAK 383
Cdd:PRK09510 173 AEaAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAA-------EAKKKAAAEAKAAAAKAAAEAKAAAEKAA 242
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
149-312 |
1.99e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 41.43 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 149 KEQAEGEEVARLAKEQAEREEAERLAKEEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKE 228
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 229 QAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARlaKEQAEREEAARLAKEQA 308
Cdd:PRK12678 136 AARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREER--GRDGDDRDRRDRREQGD 213
|
....
gi 1176382922 309 EREE 312
Cdd:PRK12678 214 RREE 217
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
188-341 |
2.28e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 41.43 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 188 KEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKE 267
Cdd:PRK12678 82 RAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAA 161
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1176382922 268 QAEREEAARLAKEQAEREEAARLAKEQAEREEAARlaKEQAEREEAARLAKEKAEREEAARlaKEQAEREEAAR 341
Cdd:PRK12678 162 ERTEEEERDERRRRGDREDRQAEAERGERGRREER--GRDGDDRDRRDRREQGDRREERGR--RDGGDRRGRRR 231
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
153-344 |
2.45e-03 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 41.09 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 153 EGEEVARLAKEQAEREEAERLAKEEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEr 232
Cdd:PRK05035 463 EREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAA- 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 233 EEAARLAKEqaereeAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREE 312
Cdd:PRK05035 542 AADPKKAAV------AAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKKA 615
|
170 180 190
....*....|....*....|....*....|..
gi 1176382922 313 AARLAKEKAEREEAARLAKEQAEREEAARLAK 344
Cdd:PRK05035 616 AVAAAIARAKAKKAEQQANAEPEEPVDPRKAA 647
|
|
| PLN03086 |
PLN03086 |
PRLI-interacting factor K; Provisional |
258-324 |
2.77e-03 |
|
PRLI-interacting factor K; Provisional
Pssm-ID: 178635 [Multi-domain] Cd Length: 567 Bit Score: 41.01 E-value: 2.77e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1176382922 258 REEAARLAKEQAEREEAARLakeQAEREeaaRLAKEQAEREEAARLAKEQAEREEAARlAKEKAERE 324
Cdd:PLN03086 6 RRAREKLEREQRERKQRAKL---KLERE---RKAKEEAAKQREAIEAAQRSRRLDAIE-AQIKADQQ 65
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
228-327 |
2.93e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.84 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 228 EQAERE-EAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAErEEAARLAKEQAEREEAARLAKEQAEREeaARLAKE 306
Cdd:COG0542 421 EQLEIEkEALKKEQDEASFERLAELRDELAELEEELEALKARWE-AEKELIEEIQELKEELEQRYGKIPELE--KELAEL 497
|
90 100
....*....|....*....|.
gi 1176382922 307 QAEREEAARLAKEKAEREEAA 327
Cdd:COG0542 498 EEELAELAPLLREEVTEEDIA 518
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
188-343 |
3.35e-03 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 40.71 E-value: 3.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 188 KEQAEGEEAARLAKEQaereeaerlakEQAEREEAERVAKEQAEREEAARLAKEQAEREEaarlakEQAEREEAARLAKE 267
Cdd:pfam15709 352 RKRREQEEQRRLQQEQ-----------LERAEKMREELELEQQRRFEEIRLRKQRLEEER------QRQEEEERKQRLQL 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 268 QAEREEAARLAKE----------QAEREEAARL-AKEQAEREEAARLAKEQ---AEREEAARLA--KEKAEREEAARLAK 331
Cdd:pfam15709 415 QAAQERARQQQEEfrrklqelqrKKQQEEAERAeAEKQRQKELEMQLAEEQkrlMEMAEEERLEyqRQKQEAEEKARLEA 494
|
170
....*....|....
gi 1176382922 332 EQAER--EEAARLA 343
Cdd:pfam15709 495 EERRQkeEEAARLA 508
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
507-705 |
3.55e-03 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 40.32 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 507 VILMVGVNGVGKTTTIGKMAKQ--FQAQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADsASVVFDAFQAAQ 584
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAARavIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIAD-LQLMLHELRGKH 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 585 ArdvdVLIaDTAGRLQNKDNLMQELEKIARVMKKLdpdaphEVMLTIDAGTGQNAISQVKLFDQAVGLTGITLTKLDGTA 664
Cdd:PRK14721 272 M----VLI-DTVGMSQRDQMLAEQIAMLSQCGTQV------KHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAA 340
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1176382922 665 KGGVIFAVADQFKMPIRYIGVGESI-DDLRTFKSDDFIEALF 705
Cdd:PRK14721 341 SLGIALDAVIRRKLVLHYVTNGQKVpEDLHEANSRYLLHRIF 382
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
150-321 |
3.67e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 40.17 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 150 EQAEGEEVARLAKEQAEREEAERLAKEEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREEAERVAKEQ 229
Cdd:PRK09510 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAE 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 230 AE-REEAARLAKEQAEREEAARLAKEQAEREEAARLAKeqaereeAARLAKEQAEREEAARLAKEQAEREEAARLAKEQA 308
Cdd:PRK09510 173 AEaAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKK-------AAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAK 245
|
170
....*....|...
gi 1176382922 309 EREEAARLAKEKA 321
Cdd:PRK09510 246 AAEKAAAAKAAAE 258
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
150-341 |
3.75e-03 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 40.21 E-value: 3.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 150 EQAEGEEVARLAKEQAEREEAERLAKEEAEREEAARLAKEQAEGEEAARLAKEQAEREEAERLAKEQAEREeaervAKEQ 229
Cdd:TIGR02794 63 AKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAK-----AKAE 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 230 AEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAArLAKEQAEREEAARLAKEQAEREEAARLAKEQAE 309
Cdd:TIGR02794 138 AEAERKAKEEAAKQAEEEAKAKAAAEAKKKAEEAKKKAEAEAKAKA-EAEAKAKAEEAKAKAEAAKAKAAAEAAAKAEAE 216
|
170 180 190
....*....|....*....|....*....|..
gi 1176382922 310 REEAARLAKEKAEREEAARLAKEQAEREEAAR 341
Cdd:TIGR02794 217 AAAAAAAEAERKADEAELGDIFGLASGSNAEK 248
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
226-331 |
3.80e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 40.51 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 226 AKEQAERE-EAARLAKEQAEREEAARLAKEQAEREeaARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLA 304
Cdd:pfam09731 310 EEKHIERAlEKQKEELDKLAEELSARLEEVRAADE--AQLRLEFEREREEIRESYEEKLRTELERQAEAHEEHLKDVLVE 387
|
90 100
....*....|....*....|....*..
gi 1176382922 305 KEQAEREEAARLAKEKAEREEAARLAK 331
Cdd:pfam09731 388 QEIELQREFLQDIKEKVEEERAGRLLK 414
|
|
| CCDC34 |
pfam13904 |
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ... |
232-341 |
5.12e-03 |
|
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.
Pssm-ID: 464032 [Multi-domain] Cd Length: 221 Bit Score: 38.92 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 232 REEAARLAKEQAEREEAArlaKEQAEREEAARLAKE--------QAEREEAARLAKEQAEREEAARLAKEQAEREEAARL 303
Cdd:pfam13904 63 AKQRQRQKELQAQKEERE---KEEQEAELRKRLAKEkyqewlqrKARQQTKKREESHKQKAAESASKSLAKPERKVSQEE 139
|
90 100 110
....*....|....*....|....*....|....*...
gi 1176382922 304 AKEQAEREEAARLAKEKAEREEaARLAKEQAEREEAAR 341
Cdd:pfam13904 140 AKEVLQEWERKKLEQQQRKREE-EQREQLKKEEEEQER 176
|
|
| PLN03086 |
PLN03086 |
PRLI-interacting factor K; Provisional |
271-337 |
5.71e-03 |
|
PRLI-interacting factor K; Provisional
Pssm-ID: 178635 [Multi-domain] Cd Length: 567 Bit Score: 39.86 E-value: 5.71e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1176382922 271 REEAARLAKEQAEREEAARLakeQAEREeaaRLAKEQAEREEAARLAKEKAEREEAARlAKEQAERE 337
Cdd:PLN03086 6 RRAREKLEREQRERKQRAKL---KLERE---RKAKEEAAKQREAIEAAQRSRRLDAIE-AQIKADQQ 65
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
501-615 |
6.10e-03 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 37.92 E-value: 6.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 501 ANKKPFVILmVGVNGVGKTTTIGKMAKQFQAQGKSVMLAAgDTFRAAAVeqLqvwGERNDIPV--IAQHTGADSASVVFD 578
Cdd:cd17933 9 VLRNRVSVL-TGGAGTGKTTTLKALLAALEAEGKRVVLAA-PTGKAAKR--L---SESTGIEAstIHRLLGINPGGGGFY 81
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1176382922 579 aFQAAQARDVDVLIADTAG----RLQNKdnLMQELEKIARV 615
Cdd:cd17933 82 -YNEENPLDADLLIVDEASmvdtRLMAA--LLSAIPAGARL 119
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
227-341 |
7.62e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 39.72 E-value: 7.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 227 KEQAEREEAARLAKEQAEReeaARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLA-- 304
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQER---LRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEer 358
|
90 100 110
....*....|....*....|....*....|....*..
gi 1176382922 305 KEQAEREEAARLAKEKAEREEAARLAKEQAEREEAAR 341
Cdd:pfam17380 359 KRELERIRQEEIAMEISRMRELERLQMERQQKNERVR 395
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
227-357 |
7.86e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.65 E-value: 7.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 227 KEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAE--------REEAARLAKEQAEREEAARLAKEQAERE 298
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEElkeeleslEAELEELEAELEELESRLEELEEQLETL 384
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 299 EAARLAKEQAEREEAARLAKEKAEREE-AARLAKEQAEREEAARLAKEQAEREEAERLAK 357
Cdd:TIGR02168 385 RSKVAQLELQIASLNNEIERLEARLERlEDRRERLQQEIEELLKKLEEAELKELQAELEE 444
|
|
| PLN03086 |
PLN03086 |
PRLI-interacting factor K; Provisional |
245-311 |
7.91e-03 |
|
PRLI-interacting factor K; Provisional
Pssm-ID: 178635 [Multi-domain] Cd Length: 567 Bit Score: 39.47 E-value: 7.91e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1176382922 245 REEAARLAKEQAEREEAARLakeQAEREeaaRLAKEQAEREEAARLAKEQAEREEAARlAKEQAERE 311
Cdd:PLN03086 6 RRAREKLEREQRERKQRAKL---KLERE---RKAKEEAAKQREAIEAAQRSRRLDAIE-AQIKADQQ 65
|
|
| PLN03086 |
PLN03086 |
PRLI-interacting factor K; Provisional |
232-298 |
7.91e-03 |
|
PRLI-interacting factor K; Provisional
Pssm-ID: 178635 [Multi-domain] Cd Length: 567 Bit Score: 39.47 E-value: 7.91e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1176382922 232 REEAARLAKEQAEREEAARLakeQAEREeaaRLAKEQAEREEAARLAKEQAEREEAARlAKEQAERE 298
Cdd:PLN03086 6 RRAREKLEREQRERKQRAKL---KLERE---RKAKEEAAKQREAIEAAQRSRRLDAIE-AQIKADQQ 65
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
195-343 |
8.95e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 39.31 E-value: 8.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 195 EAARLAKEQAEREEAERLAKEQAEREEAERVAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEA 274
Cdd:PRK12705 33 KEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREK 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 275 ARLAKEQAEREEAARLAkeqAEREEAARLAKEQAeREEAARLAKEKAEREEAARLAK-EQAEREEAARLA 343
Cdd:PRK12705 113 ALSARELELEELEKQLD---NELYRVAGLTPEQA-RKLLLKLLDAELEEEKAQRVKKiEEEADLEAERKA 178
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
228-383 |
8.97e-03 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 39.06 E-value: 8.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 228 EQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQ 307
Cdd:TIGR02794 63 AKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAER 142
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1176382922 308 AEREEAARLAKEKAEREEAARLAKEQAEREeaarlaKEQAEREEAERLAKEQAEREEAERLAKEQAEREEAERLAK 383
Cdd:TIGR02794 143 KAKEEAAKQAEEEAKAKAAAEAKKKAEEAK------KKAEAEAKAKAEAEAKAKAEEAKAKAEAAKAKAAAEAAAK 212
|
|
| PRK06991 |
PRK06991 |
electron transport complex subunit RsxB; |
241-343 |
9.72e-03 |
|
electron transport complex subunit RsxB;
Pssm-ID: 235903 [Multi-domain] Cd Length: 270 Bit Score: 38.62 E-value: 9.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176382922 241 EQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAARLAKEQAEREEAAR--LAK 318
Cdd:PRK06991 153 DAARARHDARQARLRREREAAEARAAARAAASAAAAAAEASAAAAPAADDAEAKKRAIIAAALERARKKKEELAAqgAGP 232
|
90 100
....*....|....*....|....*
gi 1176382922 319 EKAEREEAARLAKEQAEREEAARLA 343
Cdd:PRK06991 233 KNTEGVSAAVQAQIDAAEARRKRLA 257
|
|
| |
