|
Name |
Accession |
Description |
Interval |
E-value |
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
31-543 |
3.97e-32 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 132.51 E-value: 3.97e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 31 TDTPAKFPTSVDLKSLTTSGS-YLAARhasverDAASAAAFYRSALRSDPKNNELLDRAFISSVADGDIDEAVKLADRVL 109
Cdd:TIGR02917 351 TLSPALGLDPDDPAALSLLGEaYLALG------DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 110 AVDKSNRIARLVMGVQDIKQKKYAAAQNNINQSVRGPITDLVATLLSAWATAGAGDAKGAVANIDKL--TGPEWYPLFKD 187
Cdd:TIGR02917 425 QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAlsIEPDFFPAAAN 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 188 LhaGMILELAGKEKEAGVRFERAYKLDDSMLRITEAYAHWLSRNKDAASATAIYEafdKKLARHP--------LVQEGLR 259
Cdd:TIGR02917 505 L--ARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE---KAAELNPqeiepalaLAQYYLG 579
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 260 DTKAGKKLPPLVDSP--QAGAAEALYGIGATLSRRGGEDLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVYE 337
Cdd:TIGR02917 580 KGQLKKALAILNEAAdaAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 338 RVPASSPLKRNAQIQLATDLDAADRSDEAIKILKDVITQDPKDLEAIMALGNIERGRKKFADCAKTYTLGIDSLP----- 412
Cdd:TIGR02917 660 RALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPssqna 739
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 413 --------ANNDKA---------------NSVYYYYRGICLERSKQWPKAEADMRKALELQPDQPHVLNYLgySWIDQGI 469
Cdd:TIGR02917 740 iklhrallASGNTAeavktleawlkthpnDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNL--AWLYLEL 817
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1194631850 470 NLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRIGNYEEAVKNLERAIDLKPEDPTINDHLGDAYWKVGRKLEAK 543
Cdd:TIGR02917 818 KDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
422-555 |
1.09e-25 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 102.58 E-value: 1.09e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 422 YYYYRGICLERSKQWPKAEADMRKALELQPDQPHVLNYLGYSWIDQGiNLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFR 501
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-DLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1194631850 502 IGNYEEAVKNLERAIDLKPEDPTINDHLGDAYWKVGRKLEAKFQWAHARDLKPE 555
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
296-559 |
1.45e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 106.35 E-value: 1.45e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 296 DLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLKRNAQIQLATDLDAADRSDEAIKILKDVIT 375
Cdd:COG2956 25 DKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 376 QDPKDLEAIMALGNIergrkkfadcaktytlgidslpanndkansvyyyyrgicLERSKQWPKAEADMRKALELQPDQPH 455
Cdd:COG2956 105 LDPDDAEALRLLAEI---------------------------------------YEQEGDWEKAIEVLERLLKLGPENAH 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 456 VLNYLGYSWIDQGiNLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRIGNYEEAVKNLERAIDLKPEDPTINDHLGDAYWK 535
Cdd:COG2956 146 AYCELAELYLEQG-DYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK 224
|
250 260
....*....|....*....|....
gi 1194631850 536 VGRKLEAKFQWAHARDLKPEPEEL 559
Cdd:COG2956 225 LGDPEEALELLRKALELDPSDDLL 248
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
351-558 |
2.10e-24 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 101.92 E-value: 2.10e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 351 IQLATDLDAADRSDEAIKILKDVITQDPKDLEAIMALGNIERGRKKFADCAKTYTLGIDSLPANNDKANSvyYYYRGICL 430
Cdd:COG4785 6 LALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQL--YYERGVAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 431 ERSKQWPKAEADMRKALELQPDQPHVLNYLGYSWIDQGiNLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRIGNYEEAVK 510
Cdd:COG4785 84 DSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLG-DYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIA 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1194631850 511 NLERAIDLKPEDPTINDHLGDAYWKVGR---KLEAKFQWAHARDLKPEPEE 558
Cdd:COG4785 163 DLEKALELDPNDPERALWLYLAERKLDPekaLALLLEDWATAYLLQGDTEE 213
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
374-559 |
2.70e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 102.01 E-value: 2.70e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 374 ITQDPKDLEAIMALGNIERGRKKFADCAKTYTLGIDslpanNDKANSVYYYYRGICLERSKQWPKAEADMRKALELQPDQ 453
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE-----LDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 454 PHVLNYLGYSWIDQGiNLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRIGNYEEAVKNLERAIDLKPEDPTINDHLGDAY 533
Cdd:COG0457 76 AEALNNLGLALQALG-RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL 154
|
170 180
....*....|....*....|....*.
gi 1194631850 534 WKVGRKLEAKFQWAHARDLKPEPEEL 559
Cdd:COG0457 155 EKLGRYEEALELLEKLEAAALAALLA 180
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
190-516 |
2.88e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 88.25 E-value: 2.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 190 AGMILELAGKEKEAGVRFERAYKLDDSMLRITEAYAHWLSRNKDAASATAIYEafdKKLARHPlvqeglrdtkagkklpp 269
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQ---KLLERDP----------------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 270 lvdspqaGAAEALYGIGATLSRRGGEDLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLKRNA 349
Cdd:COG2956 74 -------DRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 350 QIQLATDLDAADRSDEAIKILKDVITQDPKDLEAIMALGNIergrkkfadcaktytlgidslpanndkansvyyyyrgic 429
Cdd:COG2956 147 YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL--------------------------------------- 187
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 430 LERSKQWPKAEADMRKALELQPDQPHVLNYLGYSWIDQGiNLDEGMKMIKRAVEQRPDDgYIVDSLGWAYFRIGNYEEAV 509
Cdd:COG2956 188 YLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG-DPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAAL 265
|
....*..
gi 1194631850 510 KNLERAI 516
Cdd:COG2956 266 ALLERQL 272
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
275-560 |
3.04e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 88.51 E-value: 3.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 275 QAGAAEALYGIGATLSRRGGEDLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLKRNAQIQLA 354
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 355 TDLDAADRSDEAIKILKDVITQDPKDLEAimalgniergrkkfadcaktytlgidslpanndkansvyYYYRGICLERSK 434
Cdd:COG3914 86 LLLQALGRYEEALALYRRALALNPDNAEA---------------------------------------LFNLGNLLLALG 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 435 QWPKAEADMRKALELQPDQPHVLNYLGYSWIDQGiNLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRIGNYEEAVKNLER 514
Cdd:COG3914 127 RLEEALAALRRALALNPDFAEAYLNLGEALRRLG-RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRR 205
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1194631850 515 AIDLKPEDPTINDHLGDAYWKVGRKLEAKFQWAHARDLKPEPEELP 560
Cdd:COG3914 206 ALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS 251
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
306-570 |
1.53e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 82.36 E-value: 1.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 306 LHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLKRNAQIQLATDLDAADRSDEAIKILKDVITQDPKDLEAim 385
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 386 algniergrkkfadcaktytlgidslpanndkansvyYYYRGICLERSKQWPKAEADMRKALELQPDQPHVLNYLGYSWI 465
Cdd:COG0457 79 -------------------------------------LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 466 DQGiNLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRIGNYEEAVKNLERAIDLKPEDPTINDHLGDAYWKVGRKLEAKFQ 545
Cdd:COG0457 122 ELG-RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALL 200
|
250 260
....*....|....*....|....*
gi 1194631850 546 WAHARDLKPEPEELPKIEAKIQNGL 570
Cdd:COG0457 201 LALEQALRKKLAILTLAALAELLLL 225
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
257-569 |
1.35e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 83.59 E-value: 1.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 257 GLRDTKAGKKLPPLVDSPQAGAAEALYGIGATLSRRGGEDLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVY 336
Cdd:TIGR02917 137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 337 ERVPASSPLKRNAQIQLATDLDAADRSDEAIKILKDVITQDPKDLEAIMALGNIERGRKKFADcAKTYTlgIDSLPANND 416
Cdd:TIGR02917 217 RKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED-ARETL--QDALKSAPE 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 417 KANSVYYyyRGICLERSKQWPKAEADMRKALELQPDQPHVLNYLGYSWIDQGiNLDEGMKMIKRAVEQRPDDGYIVDSLG 496
Cdd:TIGR02917 294 YLPALLL--AGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG-RVDEAIATLSPALGLDPDDPAALSLLG 370
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1194631850 497 WAYFRIGNYEEAVKNLERAIDLKPEDPTINDHLGDAYWKVGRKLEAKFQWAHARDLKPEP--EELPKIEAKIQNG 569
Cdd:TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELgrADLLLILSYLRSG 445
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
62-567 |
3.25e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 79.36 E-value: 3.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 62 RDAASAAAFYRSALRSDPKNNELLDRAFISSVADGDIDEAVKLADRVLAVDKSNRIARLVMGVQDIKQKKYAAAQNNINQ 141
Cdd:TIGR02917 139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 142 SVR------GPITDLVATLLSAWATAGA----------------------------GDAKGAVANIDKL--TGPEWYPLF 185
Cdd:TIGR02917 219 AIAlrpnniAVLLALATILIEAGEFEEAekhadallkkapnsplahylkalvdfqkKNYEDARETLQDAlkSAPEYLPAL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 186 kdLHAGMILELAGKEKEAGVRFERAYKLDDSMLRITEAYAHWLSRNKDAASATAIYEAFDKKLARHPLVQE-------GL 258
Cdd:TIGR02917 299 --LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSllgeaylAL 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 259 RDTKAGKKLPPLVD--SPQAGAAEALYGIGATLS--------------------------------RRGGEDLALVYLQL 304
Cdd:TIGR02917 377 GDFEKAAEYLAKATelDPENAAARTQLGISKLSQgdpseaiadletaaqldpelgradlllilsylRSGQFDKALAAAKK 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 305 ALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLKRNAQIQLATDLDAADRSDEAIKILKDVITQDPKDLEAI 384
Cdd:TIGR02917 457 LEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 385 MALGNIERGRKKFADCAKTYTLGIDSLPANNDKANSVYYYYRGiclerSKQWPKAEADMRKALELQPDQPHVLNYLGYSW 464
Cdd:TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG-----KGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 465 IDQGiNLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRIGNYEEAVKNLERAIDLKPEDPTINDHLGDAYWKVGRKLEAKF 544
Cdd:TIGR02917 612 LAAG-DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690
|
570 580
....*....|....*....|...
gi 1194631850 545 QWAHARDLKPEPEELPKIEAKIQ 567
Cdd:TIGR02917 691 IAKSLQKQHPKAALGFELEGDLY 713
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
414-522 |
3.54e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.53 E-value: 3.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 414 NNDKANSVYYYYRGICLERSKQWPKAEADMRKALELQPDQPHVLNYLGYSWIDQGiNLDEGMKMIKRAVEQRPDDGYIVD 493
Cdd:COG4783 32 ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG-DYDEALALLEKALKLDPEHPEAYL 110
|
90 100
....*....|....*....|....*....
gi 1194631850 494 SLGWAYFRIGNYEEAVKNLERAIDLKPED 522
Cdd:COG4783 111 RLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
267-460 |
5.38e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 78.11 E-value: 5.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 267 LPPLVDSPQAGAAEALYGIGATLSRRGGEDLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLK 346
Cdd:COG3914 66 EAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDF 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 347 RNAQIQLATDLDAADRSDEAIKILKDVITQDPKDLEAIMALGNiergrkkfadcaktytlgidslpanndkansvyyyyr 426
Cdd:COG3914 146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGN------------------------------------- 188
|
170 180 190
....*....|....*....|....*....|....
gi 1194631850 427 giCLERSKQWPKAEADMRKALELQPDQPHVLNYL 460
Cdd:COG3914 189 --ALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
438-567 |
2.59e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 70.03 E-value: 2.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 438 KAEADMRKALELQPDQPHVLNYLGYSWIDQGiNLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRIGNYEEAVKNLERAID 517
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLG-RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1194631850 518 LKPEDPTINDHLGDAYWKVGRKLEAKFQWAHARDLKPEPEELPKIEAKIQ 567
Cdd:COG4235 80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
21-559 |
2.39e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.19 E-value: 2.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 21 TVLAQTPDHPtdtpakfptsvdlkslttSGSYLAARHASVERDAASAAAFYRSALRSDPKNNELLDRAFISSVADGDIDE 100
Cdd:TIGR02917 252 ALLKKAPNSP------------------LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQ 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 101 AVKLADRVLAVDKSNRIARLVMGVQDIKQKKYAAAQNNINQSVRGPITDLVATLLSAWATAGAGDAKGAVANIDKLTGPE 180
Cdd:TIGR02917 314 AYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 181 WYPLFKDLHAGMILELAGKEKEAGVRFERAYKLDDSMLRITEAYAHWLSRNKDAASATAIYEAFDKKLARHPLVQEGLrd 260
Cdd:TIGR02917 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLL-- 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 261 tkagkklpplvdspqagaaealygiGATLSRRGGEDLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVP 340
Cdd:TIGR02917 472 -------------------------GAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 341 ASSPLKRNAQIQLATDLDAADRSDEAIKILKDVITQDPKDLEAIMALGniergrkkfadcaktytlgidslpanndkans 420
Cdd:TIGR02917 527 TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALA-------------------------------- 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 421 VYYyyrgiclERSKQWPKAEADMRKALELQPDQPHvlnylgyswidqginldegmkmikraveqrpddgyIVDSLGWAYF 500
Cdd:TIGR02917 575 QYY-------LGKGQLKKALAILNEAADAAPDSPE-----------------------------------AWLMLGRAQL 612
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1194631850 501 RIGNYEEAVKNLERAIDLKPEDPTINDHLGDAYWKVGRKLEAKFQWAHARDLKPEPEEL 559
Cdd:TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
470-554 |
9.12e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.14 E-value: 9.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 470 NLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRIGNYEEAVKNLERAIDLKPEDPTINDHLGDAYWKVGRKLEAKFQWAHA 549
Cdd:COG5010 69 DFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
....*
gi 1194631850 550 RDLKP 554
Cdd:COG5010 149 LGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
429-521 |
4.06e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 62.50 E-value: 4.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 429 CLERSKQWPKAEADMRKALELQPDQPHVLNYLGYSWIDQGiNLDEGMKmIKRAVEQRPDDGYIVDSLGWAYFRIGNYEEA 508
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-RYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|...
gi 1194631850 509 VKNLERAIDLKPE 521
Cdd:COG3063 79 LAYLERALELDPS 91
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
279-460 |
7.22e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.80 E-value: 7.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 279 AEALYGIGATLSRRGGEDLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLKRNAQIQLATDLD 358
Cdd:COG0457 42 AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 359 AADRSDEAIKILKDVITQDPKDLEAIMALGNIERGRKKFADCAKTYTLGIDSLPANNDKANSVYYYYRGICLERSKQWPK 438
Cdd:COG0457 122 ELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLL 201
|
170 180
....*....|....*....|..
gi 1194631850 439 AEADMRKALELQPDQPHVLNYL 460
Cdd:COG0457 202 ALEQALRKKLAILTLAALAELL 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
276-414 |
1.76e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.13 E-value: 1.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 276 AGAAEALYGIGATLSRRGGEDLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLKRNAQIQLAT 355
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1194631850 356 DLDAADRSDEAIKILKDVITQDPKDLEAIMALGNIERGRKKFADCAKTYTLGIDSLPAN 414
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
365-488 |
2.43e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.56 E-value: 2.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 365 EAIKILKDVITQDPKDLEAIMALGNIERGRKKFADCAKTYTLGIDSLPANNDkansvYYYYRGICLERSKQWPKAEADMR 444
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD-----ALLDLAEALLAAGDTEEAEELLE 75
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1194631850 445 KALELQPDQPHVLNYLGYSWIDQGiNLDEGMKMIKRAVEQRPDD 488
Cdd:COG4235 76 RALALDPDNPEALYLLGLAAFQQG-DYAEAIAAWQKLLALLPAD 118
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
470-555 |
3.71e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.80 E-value: 3.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 470 NLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRIGNYEEAVKnLERAIDLKPEDPTINDHLGDAYWKVGRKLEAKFQWAHA 549
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
....*.
gi 1194631850 550 RDLKPE 555
Cdd:COG3063 86 LELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
380-520 |
4.67e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.51 E-value: 4.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 380 DLEAIMALGNIERGRKKFADCAKTYTLGIDSLPANNDKANSVYYYYRGICLERSKQWPKAEADMRKALELQPDQPHVLNY 459
Cdd:COG5010 14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYN 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1194631850 460 LGYSWIDQGiNLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRIGNYEEAVKNLERAIDLKP 520
Cdd:COG5010 94 LALLYSRSG-DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
298-416 |
5.03e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.40 E-value: 5.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 298 ALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLKRNAQIQLATDLDAADRSDEAIKILKDVITQD 377
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....*....
gi 1194631850 378 PKDLEAIMALGNIERGRKKFADCAKTYTLGIDSLPANND 416
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
43-338 |
5.60e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.51 E-value: 5.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 43 LKSLTTSGSYLAARHASVERDAASAAAFYRSALRSDPKNNEL---LDRAFISSvadGDIDEAVKLADRVLAVDKSNRIAR 119
Cdd:COG2956 3 LPVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAhlaLGNLYRRR---GEYDRAIRIHQKLLERDPDRAEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 120 LVMGVQDIKQKKYAAAQNNINQSVRGPITDLVATLLSAWATAGAGDAKGAVANIDKLTGPEWYPLFKDLHAGMILELAGK 199
Cdd:COG2956 80 LELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 200 EKEAGVRFERAYKLDDSMLRITEAYAHWLSRNKDAASATAIYEafdKKLARHPlvqeglrdtkagkklpplvdspqaGAA 279
Cdd:COG2956 160 YDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE---RALEQDP------------------------DYL 212
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1194631850 280 EALYGIGATLSRRGGEDLALVYLQLALHLQPNhPLALLSLADLYETVKKPQMAIKVYER 338
Cdd:COG2956 213 PALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLER 270
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
418-533 |
5.97e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.51 E-value: 5.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 418 ANSVYYYYRGICLERSKQWPKAEADMRKALELQPDQPHVLNYLGYSWIDQGiNLDEGMKMIKRAVEQRPDDGYIVDSLGW 497
Cdd:COG2956 6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRG-EYDRAIRIHQKLLERDPDRAEALLELAQ 84
|
90 100 110
....*....|....*....|....*....|....*.
gi 1194631850 498 AYFRIGNYEEAVKNLERAIDLKPEDPTINDHLGDAY 533
Cdd:COG2956 85 DYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIY 120
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
278-549 |
1.88e-08 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 56.46 E-value: 1.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 278 AAEALYGIGATLSRRGgedlalvYLQLALHLQPNHPLA-LLSLADLYETVKKPQMAIKVYERVPASSPLKRNAQIQLATD 356
Cdd:COG3071 56 AARAAQALGDYERRDE-------YLAQALELAPEAELAvLLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQA 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 357 LDAADRSDEAIKILKDVITQ---DPKDLEAIMALGNIERGRKKFADCAKTYTLgIDSLPANnDKANSVYYYYRGICLERS 433
Cdd:COG3071 129 YRQLGDWEELLELLPALRKHkalSAEEAQALERRAYLGLLRQAARDAEALKAL-WKALPRA-ERRDPELAAAYARALIAL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 434 KQWPKAEADMRKALELQPDqPHVLNYLGYSwidQGINLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRIGNYEEAVKNLE 513
Cdd:COG3071 207 GDHDEAERLLREALKRQWD-PRLVRLYGRL---QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLE 282
|
250 260 270
....*....|....*....|....*....|....*.
gi 1194631850 514 RAIDLKPeDPTINDHLGDAYWKVGRKLEAKFQWAHA 549
Cdd:COG3071 283 AALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKA 317
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
496-537 |
3.81e-08 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 49.39 E-value: 3.81e-08
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1194631850 496 GWAYFRIGNYEEAVKNLERAIDLKPEDPTINDHLGDAYWKVG 537
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
279-392 |
4.38e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.93 E-value: 4.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 279 AEALYGIGATLSRRGGEDLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLKRNAQIQLATDLD 358
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
|
90 100 110
....*....|....*....|....*....|....
gi 1194631850 359 AADRSDEAIKILKDVITQDPKDLEAIMALGNIER 392
Cdd:COG4235 97 QQGDYAEAIAAWQKLLALLPADAPARLLEASIAE 130
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
191-394 |
8.49e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 53.47 E-value: 8.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 191 GMILELAGKEKEAGVRFERAYKLDDSMLRITEAYAHWLSRNKDAASAtaiYEAFDKKLARHPlvqeglrdtkagkklppl 270
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEA---LADYEQALELDP------------------ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 271 vdspqaGAAEALYGIGATLSRRGGEDLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLKRNAQ 350
Cdd:COG0457 74 ------DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADAL 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1194631850 351 IQLATDLDAADRSDEAIKILKDVITQDPKDLEAIMALGNIERGR 394
Cdd:COG0457 148 YNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALA 191
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
470-568 |
1.41e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 47.29 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 470 NLDEGMKMIKRAVEQRPDDGYIVDS---LGWAYFRIGNYEEAVKNLERAIDLKPEDPTIND---HLGDAYWKVGRKLEAK 543
Cdd:COG1729 8 DYDEAIAAFKAFLKRYPNSPLAPDAlywLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDYDKAR 87
|
90 100
....*....|....*....|....*
gi 1194631850 544 FQWAHARDLKPEPEELPKIEAKIQN 568
Cdd:COG1729 88 ATLEELIKKYPDSEAAKEARARLAR 112
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
52-176 |
1.59e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.88 E-value: 1.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 52 YLAARHASVERDAASAAAFYRSALRSDPKNNELLDRAFISSVADGDIDEAVKLADRVLAVDKSNRIARLVMGVQDIKQKK 131
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1194631850 132 YAAAQNNINQSVRGPITDLVATLLSAWATAGAGDAKGAVANIDKL 176
Cdd:COG4783 88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
|
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
423-518 |
1.74e-06 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 51.07 E-value: 1.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 423 YYYRGICLERSKQWPKAEADMRKALELQPDQPHVLNYLGYSWIDQGiNLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRI 502
Cdd:PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG-DIAQSREMLERAHKGLPDDPALIRQLAYVNQRL 690
|
90
....*....|....*.
gi 1194631850 503 GNYEEAVKNLERAIDL 518
Cdd:PRK09782 691 DDMAATQHYARLVIDD 706
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
335-542 |
7.45e-06 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 47.72 E-value: 7.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 335 VYERVPASSPLKRN----AQIQLATDLDAADRSDEAIKILKDVITQDPKDLEAIMALGniergrkkfadcaktytlgids 410
Cdd:TIGR02521 15 TPDVPRSSRTTDRNkaakIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALA---------------------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 411 lpanndkansvYYYyrgiclERSKQWPKAEADMRKALELQPDQPHVLNYLGYSWIDQGiNLDEGMKMIKRAVEQ----RP 486
Cdd:TIGR02521 73 -----------LYY------QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG-KYEQAMQQFEQAIEDplypQP 134
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1194631850 487 DDGYivDSLGWAYFRIGNYEEAVKNLERAIDLKPEDPTINDHLGDAYWKVGRKLEA 542
Cdd:TIGR02521 135 ARSL--ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
278-378 |
2.27e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.95 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 278 AAEALYGIGATLSRRGGEDLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLKRNAQIQLATDL 357
Cdd:COG5010 53 AFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALL 132
|
90 100
....*....|....*....|.
gi 1194631850 358 DAADRSDEAIKILKDVITQDP 378
Cdd:COG5010 133 LSLGQDDEAKAALQRALGTSP 153
|
|
| PGA_TPR_OMP |
TIGR03939 |
poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA; Members of this protein family are the ... |
42-394 |
3.39e-05 |
|
poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA; Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats.
Pssm-ID: 274868 [Multi-domain] Cd Length: 800 Bit Score: 46.96 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 42 DLKSLTTSGSYLAARHASVERDAASAAAFYRSALRSDPKNNELLDRAFISSVADGDIDEAVKLADRVLAV---DKSNRIA 118
Cdd:TIGR03939 80 SPVGLPARVLEALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARfptDAARYEA 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 119 RLVmgVQDIKQKKYAAAQNNINQSVRGPI-TDLVATLLSAWATAGAGDAKGAVAN--IDKLTGPEWYPLFKDLHAgMILE 195
Cdd:TIGR03939 160 LAY--VLRAAEDHLDALQAWQQALTLEPDnPEAALELYRILTRLGAPPAAARLAKqyPDLFTPEDQRWLEHDQAA-ELVR 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 196 LAGK----EKEAGVRFERAYKLDDSMLRITEAYAHWLSRNkdaasatAIYEAFDKKLARH---PLVQEGLRDTKAGKKLP 268
Cdd:TIGR03939 237 LGENpsrsEKERFAIADRALADLQALLDKWGPQANPLYRR-------ARIDRLGALLVRKryaEVIREYESLEAEGQPLP 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 269 PLVdspQAGAAEALygigatLSRRGGEDLALVYLQL-ALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLKR 347
Cdd:TIGR03939 310 PYA---QEAVADAY------LALRQPEKALPIYRELaAAEPADNNLELTIKLFYAYLEAEQYDEAQALLDGLKESTPPQR 380
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1194631850 348 N---------------AQIQLATDLDAADRSDEAIKILKDVITQDPKDLEAIMALGNIERGR 394
Cdd:TIGR03939 381 WdftrstkapnddyleAQQLLVLSLAWRGDLPEAEARLDELLATAPGNPWLRLALADVYRAR 442
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
360-456 |
5.36e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.67 E-value: 5.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 360 ADRSDEAIKILKDVITQDPKDL---EAIMALGNIERGRKKFADCAKTYTLGIDSLPANNDKANSvyYYYRGICLERSKQW 436
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDA--LLKLGLSYLELGDY 83
|
90 100
....*....|....*....|
gi 1194631850 437 PKAEADMRKALELQPDQPHV 456
Cdd:COG1729 84 DKARATLEELIKKYPDSEAA 103
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
479-555 |
7.31e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.41 E-value: 7.31e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1194631850 479 KRAVEQRPDDGYIVDSLGWAYFRIGNYEEAVKNLERAIDLKPEDPTINDHLGDAYWKVGRKLEAKFQWAHARDLKPE 555
Cdd:COG5010 44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD 120
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
289-382 |
7.83e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 41.69 E-value: 7.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 289 LSRRGGEDLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKvYERVPASSPLKRNAQIQLATDLDAADRSDEAIK 368
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|....
gi 1194631850 369 ILKDVITQDPKDLE 382
Cdd:COG3063 81 YLERALELDPSALR 94
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
293-555 |
8.28e-05 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 45.84 E-value: 8.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 293 GGEDLALVYLQlALHLQ-PNHPLALLSLADLYETVKKPQMAIKVYERVpASSPLKRNAQIQLATD-LDAADRSDEAIKIL 370
Cdd:PRK11447 161 AQRPEAINQLQ-RLNADyPGNTGLRNTLALLLFSSGRRDEGFAVLEQM-AKSPAGRDAAAQLWYGqIKDMPVSDASVAAL 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 371 KDVITQDPKDLEAIMALGNIERGRKKFADcaktytlgidslPANNDKAnsvyyyyRGICLERSKQWPKAEADMRKALElq 450
Cdd:PRK11447 239 QKYLQVFSDGDSVAAARSQLAEQQKQLAD------------PAFRARA-------QGLAAVDSGQGGKAIPELQQAVR-- 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 451 pdqphvlnylgyswidqginldegmkmikraveQRPDDGYIVDSLGWAYFRIGNYEEAVKNLERAIDLKPEDPTIND--- 527
Cdd:PRK11447 298 ---------------------------------ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKwes 344
|
250 260 270
....*....|....*....|....*....|....*....
gi 1194631850 528 -----------HLGDAYWKVGRKLEAKFQWAHARDLKPE 555
Cdd:PRK11447 345 llkvnrywlliQQGDAALKANNLAQAERLYQQARQVDNT 383
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
498-551 |
1.88e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.54 E-value: 1.88e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1194631850 498 AYFRIGNYEEAVKNLERAIDLKPEDPTINDHLGDAYWKVGRKLEA-KFQWAHARD 551
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAiALEKALKLD 55
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
495-522 |
2.15e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.56 E-value: 2.15e-04
10 20
....*....|....*....|....*...
gi 1194631850 495 LGWAYFRIGNYEEAVKNLERAIDLKPED 522
Cdd:pfam00515 7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
52-135 |
2.28e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.53 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 52 YLAARHASVERDAASAAAFYRSALRSDPKNNELLDRAFISSVADGDIDEAVKLADRVLAVDKSNRIARLVMGVQDIKQKK 131
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGD 100
|
....
gi 1194631850 132 YAAA 135
Cdd:COG4235 101 YAEA 104
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
278-354 |
2.84e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.75 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 278 AAEALYGIGATLSRRGGEDLALVYLQLALHLQPNHPL---ALLSLADLYETVKKPQMAIKVYERVPA---SSPLKRNAQI 351
Cdd:COG1729 29 APDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDKARATLEELIKkypDSEAAKEARA 108
|
...
gi 1194631850 352 QLA 354
Cdd:COG1729 109 RLA 111
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
315-405 |
2.93e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 43.64 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 315 ALLSLADLYETVKKPQMAIKVYERVPASSPLKRNAQI-----QLATDLDAADRSDEAIKILKDVITQDPKDLEAIMALGN 389
Cdd:PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIahfycELAQQALARGDLDAARALLKKALAADPQCVRASILLGD 222
|
90
....*....|....*.
gi 1194631850 390 IERGRKKFADCAKTYT 405
Cdd:PRK11788 223 LALAQGDYAAAIEALE 238
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
357-452 |
3.77e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.77 E-value: 3.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 357 LDAADRSDEAIKILKDVITQDPKDLEAIMALGNIERGRKKFADcAKTYTLGIDSLPANNDkansvYYYYRGICLERSKQW 436
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDE-AIALEKALKLDPNNAE-----ALLNLAELLLELGDY 75
|
90
....*....|....*.
gi 1194631850 437 PKAEADMRKALELQPD 452
Cdd:COG3063 76 DEALAYLERALELDPS 91
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
463-522 |
5.07e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 42.62 E-value: 5.07e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 463 SWIDQGiNLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRIGNYEEAVKNLERAIDLKPED 522
Cdd:cd24142 9 ELLDQG-NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
423-566 |
5.63e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 43.05 E-value: 5.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 423 YYYRGI--CLERSKQwpKAEADMRKALELQPDQPHVLNYLGYSWIDQGiNLDEGMKMIKRAVEQRPDDGYIVDSLGWAYF 500
Cdd:TIGR00990 334 LNLRGTfkCLKGKHL--EALADLSKSIELDPRVTQSYIKRASMNLELG-DPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1194631850 501 RIGNYEEAVKNLERAIDLKPEDPTINDHLGDAYWKVGRKLEAKFQWAHARDLKPEPEELPKIEAKI 566
Cdd:TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGEL 476
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
494-522 |
5.76e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.43 E-value: 5.76e-04
10 20
....*....|....*....|....*....
gi 1194631850 494 SLGWAYFRIGNYEEAVKNLERAIDLKPED 522
Cdd:smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
53-375 |
5.83e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.15 E-value: 5.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 53 LAARHASVErdaaSAAAFYRSALRSDPKNNELLDRAFISSVADGDIDEAVKLADRVLAVDKSNRIARLVMGVQDIKQKKY 132
Cdd:TIGR02917 542 LYLRTGNEE----EAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL 617
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 133 AAAQNNINQSVRGPITDLVATLLSAWATAGAGDAKGAVANIDKltGPEWYPLFKDLHAGMI-LELAGKEKEAGVRFERAY 211
Cdd:TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR--ALELKPDNTEAQIGLAqLLLAAKRTESAKKIAKSL 695
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 212 K------------LDDSMLRI----------TEAY------------AHWLSRNKDAASATAIYEAFDKKLARHPLVQEG 257
Cdd:TIGR02917 696 QkqhpkaalgfelEGDLYLRQkdypaaiqayRKALkrapssqnaiklHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTA 775
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 258 L--------RDTKAGKKLPPLVDSPQAGAAeALYGIgATLSRRGGEDLALVYLQLALHLQPNHPLALLSLADLYETVKKP 329
Cdd:TIGR02917 776 LaelylaqkDYDKAIKHYQTVVKKAPDNAV-VLNNL-AWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEA 853
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1194631850 330 QMAIKVYERVPASSPLKRNAQIQLATDLDAADRSDEAIKILKDVIT 375
Cdd:TIGR02917 854 DRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
294-598 |
7.94e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 42.28 E-value: 7.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 294 GEDLALVY-LQLALHLQPNHPLAllSLADLYETVK-KPQMAIKVYERvpASSPLKRNAQIQLATDLDAAdrsdeaikilk 371
Cdd:TIGR00990 327 GEKEAIALnLRGTFKCLKGKHLE--ALADLSKSIElDPRVTQSYIKR--ASMNLELGDPDKAEEDFDKA----------- 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 372 dvITQDPKDLEAIMALGNIERGRKKFADCAKTYTLGIDSLPANndkansVYYYYRGICLE-RSKQWPKAEADMRKALELQ 450
Cdd:TIGR00990 392 --LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF------IFSHIQLGVTQyKEGSIASSMATFRRCKKNF 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 451 PDQPHVLNYLGYSWIDQGiNLDEGMKMIKRAVE-QRPDDGYIVDSL-----GWAYFR-IGNYEEAVKNLERAIDLKPEDP 523
Cdd:TIGR00990 464 PEAPDVYNYYGELLLDQN-KFDEAIEKFDTAIElEKETKPMYMNVLplinkALALFQwKQDFIEAENLCEKALIIDPECD 542
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1194631850 524 TINDHLGDAYWKVGRKLEakfqwahARDLKPEPEELPKIEAKIQNGLTDDPAPAAASADTKDAPADAKKDDGKGG 598
Cdd:TIGR00990 543 IAVATMAQLLLQQGDVDE-------ALKLFERAAELARTEGELVQAISYAEATRTQIQVQEDYPVLASKLQGMLG 610
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
279-344 |
8.31e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.00 E-value: 8.31e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1194631850 279 AEALYGIGATLSRRGGEDLALVYLQlALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSP 344
Cdd:COG3063 26 ADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
298-555 |
9.83e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.38 E-value: 9.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 298 ALVYLQLALHLQPNHP----------------------------------LALLSLADLYETVKKPQMAI---------- 333
Cdd:TIGR02917 41 AIIQLKNALQKDPNDAearfllgkiylalgdyaaaekelrkalslgypknQVLPLLARAYLLQGKFQQVLdelpgktlld 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 334 -------------------------KVYERVPASSPLKRNAQIQLATDLDAADRSDEAIKILKDVITQDPKDLEAIMALG 388
Cdd:TIGR02917 121 degaaellalrglaylglgqlelaqKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 389 NIERGRKKFADCAKTYT---------------LGIDSLPANNDKANSVY--------------YYYRGICLERSKQWPKA 439
Cdd:TIGR02917 201 DLLLSLGNIELALAAYRkaialrpnniavllaLATILIEAGEFEEAEKHadallkkapnsplaHYLKALVDFQKKNYEDA 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 440 EADMRKALELQPDQPHVLNYLGYSWIDQGiNLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRIGNYEEAVKNLERAIDLK 519
Cdd:TIGR02917 281 RETLQDALKSAPEYLPALLLAGASEYQLG-NLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD 359
|
330 340 350
....*....|....*....|....*....|....*.
gi 1194631850 520 PEDPTINDHLGDAYWKVGRKLEAKFQWAHARDLKPE 555
Cdd:TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE 395
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
279-346 |
1.39e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.56 E-value: 1.39e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1194631850 279 AEALYGIGATLSRRGGEDLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLK 346
Cdd:COG5010 88 PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
228-392 |
1.54e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 40.28 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 228 LSRNKDAASATAIYEAFDKKLARHPLVQEGLRDTKAGKKLPPLVDSPQAGA-------------AEALYGIGATLSRRGG 294
Cdd:COG4785 9 LLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAaeridralalpdlAQLYYERGVAYDSLGD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 295 EDLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLKRNAQIQLATDLDAADRSDEAIKILKDVI 374
Cdd:COG4785 89 YDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKAL 168
|
170
....*....|....*...
gi 1194631850 375 TQDPKDLEAIMALGNIER 392
Cdd:COG4785 169 ELDPNDPERALWLYLAER 186
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
422-452 |
1.73e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.35 E-value: 1.73e-03
10 20 30
....*....|....*....|....*....|.
gi 1194631850 422 YYYYRGICLERSKQWPKAEADMRKALELQPD 452
Cdd:pfam07719 3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
495-521 |
2.21e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.96 E-value: 2.21e-03
10 20
....*....|....*....|....*..
gi 1194631850 495 LGWAYFRIGNYEEAVKNLERAIDLKPE 521
Cdd:pfam07719 7 LGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
63-250 |
2.53e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.99 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 63 DAASAAAFYRSALRSDPKNNELLDRAFISSVADGDIDEAVKLADRVLAVDKSNRIARLVMGVQDIKQKKYAAAQNNINQS 142
Cdd:COG0457 57 RYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 143 VRGPITDLVATLLSAWATAGAGDAKGAVANIDKLTGPEWYPLFKDLHAGMILELAGKEKEAGVRFERAYKLDDSMLRITE 222
Cdd:COG0457 137 LELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
170 180
....*....|....*....|....*...
gi 1194631850 223 AYAHWLSRNKDAASATAIYEAFDKKLAR 250
Cdd:COG0457 217 AALAELLLLALALLLALRLAALALYQYR 244
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
341-458 |
2.53e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 40.74 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 341 ASSPLKRNAQIQLATDLDAADRSDEAikilkdVITQDPKDLEA--IMALGNIERGRKKFADCAKTYTLGIDSlpanndKA 418
Cdd:TIGR00990 91 KKSTAPKNAPVEPADELPEIDESSVA------NLSEEERKKYAakLKEKGNKAYRNKDFNKAIKLYSKAIEC------KP 158
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1194631850 419 NSVYYYYRGICLERSKQWPKAEADMRKALELQPDQPHVLN 458
Cdd:TIGR00990 159 DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALN 198
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
296-451 |
2.65e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 296 DLALVYLQLALHLQPNHPLALLSLADLYETVKKPQMAIKVYERVPASSPLKRNAQIQLATD--LDAADRSDEAIKILKDV 373
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDnlYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1194631850 374 ITQDPKDLEAIMALGNIERGRKKFADCAKTYTLGIDSLPanndkANSVYYYYRGICLERSKQWPKAEADMRKALELQP 451
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSP-----DNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
96-319 |
3.86e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.22 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 96 GDIDEAVKLADRVLAVDKSNRIARLVMGVQDIKQKKYAAAQNNINQSVRGPITDLVATLLSAWATAGAGDAKGAVANIDK 175
Cdd:COG0457 22 GRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 176 LTG--PEWYPLFKDLhaGMILELAGKEKEAGVRFERAYKLDDSMLRITEAYAHWLSRNKDAASATAIYEAFDKKLARHPL 253
Cdd:COG0457 102 ALEldPDDAEALYNL--GLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1194631850 254 VQEGLRDTKAGKKLPPLVDSPQAGAAEALYGIGATLSRRGGEDLALVYLQLALHLQPNHPLALLSL 319
Cdd:COG0457 180 AAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
495-521 |
4.35e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.07 E-value: 4.35e-03
10 20
....*....|....*....|....*..
gi 1194631850 495 LGWAYFRIGNYEEAVKNLERAIDLKPE 521
Cdd:pfam13181 7 LGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
495-559 |
4.50e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 37.86 E-value: 4.50e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1194631850 495 LGWAYFRIGNYEEAVKNLERAIDLKPEDPTINDHLGDAYWKVGRKLEAKFQWAHARDLKPEPEEL 559
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA 74
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
423-523 |
8.81e-03 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 38.33 E-value: 8.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194631850 423 YYYRGICLERSKQWPKAEADMRKALELQPDQPHVLNYLGYSWIDQGiNLDEGMKMIKRAVEQRPDDGYIVDSLGWAYFRI 502
Cdd:PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG-NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145
|
90 100
....*....|....*....|.
gi 1194631850 503 GNYEEAVKNLERAIDLKPEDP 523
Cdd:PRK11189 146 GRYELAQDDLLAFYQDDPNDP 166
|
|
| |
