NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1196967974|ref|WP_086391042|]
View 

MULTISPECIES: AAA family ATPase [Bacillus cereus group]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG3950 super family cl34700
Predicted ATP-binding protein involved in virulence [General function prediction only];
391-492 1.79e-14

Predicted ATP-binding protein involved in virulence [General function prediction only];


The actual alignment was detected with superfamily member COG3950:

Pssm-ID: 443150 [Multi-domain]  Cd Length: 276  Bit Score: 73.88  E-value: 1.79e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 391 GSLEWYSLSSGEYALLSMFSRIFNAANQLERSSIPNLV---LLLIDEGELYFHPQWQKEwitiLIECLNKIFEHhnifIQ 467
Cdd:COG3950   179 EELPLNQLSDGERSLLALVGDLARRLAELNPALENPLEgegIVLIDEIDLHLHPKWQRR----ILPDLRKIFPN----IQ 250

                          90       100
                  ....*....|....*....|....*
gi 1196967974 468 VILTTHSPFLLSDITMDRVLFLEND 492
Cdd:COG3950   251 FIVTTHSPLILSSLEDEEVIVLERD 275
AAA_21 super family cl37854
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ...
 179-479 3.11e-07

AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.


The actual alignment was detected with superfamily member pfam13304:

Pssm-ID: 433102 [Multi-domain]  Cd Length: 303  Bit Score: 52.39  E-value: 3.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 179 MQVEFAMFFKDQPFASRFHIPKEIIFRINKNHTILDSLPKTLKEFINEItKYKFLKLLFKDKFDEKCS-KSSIKGFYINY 257
Cdd:pfam13304  22 LADFDALVIGLTDERSRNGGIGGIPSLLNGIDPKEPIEFEISEFLEDGV-RYRYGLDLEREDVEEKLSsKPTLLEKRLLL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 258 AKSILLYYIYSIIDFMELSHPNMDLWGLYSKFIN--ALQTIMQQLEN-NPNFKLEDFKSIVSLNIIDHHQNAKTTLSKYP 334
Cdd:pfam13304 101 REDSEEREPKFPPEAEELRLGLDVEERIELSLSElsDLISGLLLLSIiSPLSFLLLLDEGLLLEDWAVLDLAADLALFPD 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 335 TLQFLKHLENEcKQLVNLVFVDSIHTEESIYSIKYLFKQLTKPIIDiftkwqKMKLGSLEWYSLSSGEYALLSMFSRIFN 414
Cdd:pfam13304 181 LKELLQRLVRG-LKLADLNLSDLGEGIEKSLLVDDRLRERGLILLE------NGGGGELPAFELSDGTKRLLALLAALLS 253

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1196967974 415 AANQLErssipnlvLLLIDEGELYFHPQWQKEwitiLIECLNkifEHHNIFIQVILTTHSPFLLS 479
Cdd:pfam13304 254 ALPKGG--------LLLIDEPESGLHPKLLRR----LLELLK---ELSRNGAQLILTTHSPLLLD 303
SbcC super family cl33865
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
54-80 8.55e-05

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG0419:

Pssm-ID: 440188 [Multi-domain]  Cd Length: 204  Bit Score: 43.85  E-value: 8.55e-05
                          10        20
                  ....*....|....*....|....*....
gi 1196967974  54 ENNIEID--INAIVGENGTGKTTILEAIR 80
Cdd:COG0419    16 TETIDFDdgLNLIVGPNGAGKSTILEAIR 44
 
Name Accession Description Interval E-value
COG3950 COG3950
Predicted ATP-binding protein involved in virulence [General function prediction only];
391-492 1.79e-14

Predicted ATP-binding protein involved in virulence [General function prediction only];


Pssm-ID: 443150 [Multi-domain]  Cd Length: 276  Bit Score: 73.88  E-value: 1.79e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 391 GSLEWYSLSSGEYALLSMFSRIFNAANQLERSSIPNLV---LLLIDEGELYFHPQWQKEwitiLIECLNKIFEHhnifIQ 467
Cdd:COG3950   179 EELPLNQLSDGERSLLALVGDLARRLAELNPALENPLEgegIVLIDEIDLHLHPKWQRR----ILPDLRKIFPN----IQ 250

                          90       100
                  ....*....|....*....|....*
gi 1196967974 468 VILTTHSPFLLSDITMDRVLFLEND 492
Cdd:COG3950   251 FIVTTHSPLILSSLEDEEVIVLERD 275
restrict_AAA_1 TIGR04435
restriction system-associated AAA family ATPase; Members of this family are AAA family ATPases ...
 397-543 4.66e-12

restriction system-associated AAA family ATPase; Members of this family are AAA family ATPases by homology. They occur regularly in a conserved gene neighborhood with the restriction (R), modification (M), and specificity (S) proteins of an apparent type I restriction enzyme system, plus one additional uncharacterized protein. It is not clear whether members of this family contribute to restriction per se, or to another process such as transfer of mobile elements.


Pssm-ID: 275228 [Multi-domain]  Cd Length: 555  Bit Score: 68.92  E-value: 4.66e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 397 SLSSGEYALLSMFSRIFNAANqlerssiPNlVLLLIDEGELYFHPQWQKEWITILIECLNKIFEHHNIFiQVILTTHSPF 476
Cdd:TIGR04435 385 SLSDGEHQLLHSLGLCLLFKD-------TN-SLFLLDEPETHFNPKWRASFISRLRQCLEAGNTKNVMQ-EMLITTHSPF 455

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1196967974 477 LLSDITMDRVLFLENDYDNNVHSKNYLDdiHHTFGANINYLyTHSFFLKGSLMGDFAKNKINALADE 543
Cdd:TIGR04435 456 LISDCKPENVLVFKKNKENGKVEISLPK--FNTFGASINKI-TMETFGKRETIGDYAQKQLKELRER 519
AAA_21 pfam13304
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ...
 179-479 3.11e-07

AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.


Pssm-ID: 433102 [Multi-domain]  Cd Length: 303  Bit Score: 52.39  E-value: 3.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 179 MQVEFAMFFKDQPFASRFHIPKEIIFRINKNHTILDSLPKTLKEFINEItKYKFLKLLFKDKFDEKCS-KSSIKGFYINY 257
Cdd:pfam13304  22 LADFDALVIGLTDERSRNGGIGGIPSLLNGIDPKEPIEFEISEFLEDGV-RYRYGLDLEREDVEEKLSsKPTLLEKRLLL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 258 AKSILLYYIYSIIDFMELSHPNMDLWGLYSKFIN--ALQTIMQQLEN-NPNFKLEDFKSIVSLNIIDHHQNAKTTLSKYP 334
Cdd:pfam13304 101 REDSEEREPKFPPEAEELRLGLDVEERIELSLSElsDLISGLLLLSIiSPLSFLLLLDEGLLLEDWAVLDLAADLALFPD 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 335 TLQFLKHLENEcKQLVNLVFVDSIHTEESIYSIKYLFKQLTKPIIDiftkwqKMKLGSLEWYSLSSGEYALLSMFSRIFN 414
Cdd:pfam13304 181 LKELLQRLVRG-LKLADLNLSDLGEGIEKSLLVDDRLRERGLILLE------NGGGGELPAFELSDGTKRLLALLAALLS 253

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1196967974 415 AANQLErssipnlvLLLIDEGELYFHPQWQKEwitiLIECLNkifEHHNIFIQVILTTHSPFLLS 479
Cdd:pfam13304 254 ALPKGG--------LLLIDEPESGLHPKLLRR----LLELLK---ELSRNGAQLILTTHSPLLLD 303
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
54-80 8.55e-05

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 440188 [Multi-domain]  Cd Length: 204  Bit Score: 43.85  E-value: 8.55e-05
                          10        20
                  ....*....|....*....|....*....
gi 1196967974  54 ENNIEID--INAIVGENGTGKTTILEAIR 80
Cdd:COG0419    16 TETIDFDdgLNLIVGPNGAGKSTILEAIR 44
ABC_Rad50 cd03240
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ...
 52-80 4.01e-04

ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.


Pssm-ID: 213207 [Multi-domain]  Cd Length: 204  Bit Score: 41.82  E-value: 4.01e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1196967974  52 SQENNIEID----INAIVGENGTGKTTILEAIR 80
Cdd:cd03240    11 SFHERSEIEffspLTLIVGQNGAGKTTIIEALK 43
AAA_23 pfam13476
AAA domain;
55-251 1.06e-03

AAA domain;


Pssm-ID: 463890 [Multi-domain]  Cd Length: 190  Bit Score: 40.56  E-value: 1.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974  55 NNIEID----INAIVGENGTGKTTILEAIRdivsnklknkyLIIYEESGRYIYKAPHKIKINSPKLTLNVPDNTlptins 130
Cdd:pfam13476  10 RDQTIDfskgLTLITGPNGSGKTTILDAIK-----------LALYGKTSRLKRKSGGGFVKGDIRIGLEGKGKA------ 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 131 lyysnvfdvrYVSNLFNHQRIRETKDYTTNILLRRSNDIYDFFSQELTMQVEfamffKDQPFASRFHIPKEIIFRI---- 206
Cdd:pfam13476  73 ----------YVEITFENNDGRYTYAIERSRELSKKKGKTKKKEILEILEID-----ELQQFISELLKSDKIILPLlvfl 137

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1196967974 207 ---NKNHTILDSLPKTLKEFINEITKYKFLKLLFKDKFDEKCSKSSIK 251
Cdd:pfam13476 138 gqeREEEFERKEKKERLEELEKALEEKEDEKKLLEKLLQLKEKKKELE 185
recF PRK00064
recombination protein F; Reviewed
 60-79 3.02e-03

recombination protein F; Reviewed


Pssm-ID: 234608 [Multi-domain]  Cd Length: 361  Bit Score: 40.14  E-value: 3.02e-03
                          10        20
                  ....*....|....*....|
gi 1196967974  60 DINAIVGENGTGKTTILEAI 79
Cdd:PRK00064   24 GVNVLVGENGQGKTNLLEAI 43
 
Name Accession Description Interval E-value
COG3950 COG3950
Predicted ATP-binding protein involved in virulence [General function prediction only];
391-492 1.79e-14

Predicted ATP-binding protein involved in virulence [General function prediction only];


Pssm-ID: 443150 [Multi-domain]  Cd Length: 276  Bit Score: 73.88  E-value: 1.79e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 391 GSLEWYSLSSGEYALLSMFSRIFNAANQLERSSIPNLV---LLLIDEGELYFHPQWQKEwitiLIECLNKIFEHhnifIQ 467
Cdd:COG3950   179 EELPLNQLSDGERSLLALVGDLARRLAELNPALENPLEgegIVLIDEIDLHLHPKWQRR----ILPDLRKIFPN----IQ 250

                          90       100
                  ....*....|....*....|....*
gi 1196967974 468 VILTTHSPFLLSDITMDRVLFLEND 492
Cdd:COG3950   251 FIVTTHSPLILSSLEDEEVIVLERD 275
restrict_AAA_1 TIGR04435
restriction system-associated AAA family ATPase; Members of this family are AAA family ATPases ...
 397-543 4.66e-12

restriction system-associated AAA family ATPase; Members of this family are AAA family ATPases by homology. They occur regularly in a conserved gene neighborhood with the restriction (R), modification (M), and specificity (S) proteins of an apparent type I restriction enzyme system, plus one additional uncharacterized protein. It is not clear whether members of this family contribute to restriction per se, or to another process such as transfer of mobile elements.


Pssm-ID: 275228 [Multi-domain]  Cd Length: 555  Bit Score: 68.92  E-value: 4.66e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 397 SLSSGEYALLSMFSRIFNAANqlerssiPNlVLLLIDEGELYFHPQWQKEWITILIECLNKIFEHHNIFiQVILTTHSPF 476
Cdd:TIGR04435 385 SLSDGEHQLLHSLGLCLLFKD-------TN-SLFLLDEPETHFNPKWRASFISRLRQCLEAGNTKNVMQ-EMLITTHSPF 455

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1196967974 477 LLSDITMDRVLFLENDYDNNVHSKNYLDdiHHTFGANINYLyTHSFFLKGSLMGDFAKNKINALADE 543
Cdd:TIGR04435 456 LISDCKPENVLVFKKNKENGKVEISLPK--FNTFGASINKI-TMETFGKRETIGDYAQKQLKELRER 519
YbjD COG3593
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ...
 397-500 2.05e-09

Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];


Pssm-ID: 442812 [Multi-domain]  Cd Length: 359  Bit Score: 59.63  E-value: 2.05e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 397 SLSSGEYALLSMFsrIFNAANQLERSsiPNLVLLLIDEGELYFHPQWQKewitILIECLNKIFEHHNifiQVILTTHSPF 476
Cdd:COG3593   162 RLGSGFQRLILLA--LLSALAELKRA--PANPILLIEEPEAHLHPQAQR----RLLKLLKELSEKPN---QVIITTHSPH 230

                          90       100
                  ....*....|....*....|....
gi 1196967974 477 LLSDITMDRVLFLENDYDNNVHSK 500
Cdd:COG3593   231 LLSEVPLENIRRLRRDSGGTTSTK 254
COG4637 COG4637
Predicted ATPase [General function prediction only];
429-492 2.12e-07

Predicted ATPase [General function prediction only];


Pssm-ID: 443675 [Multi-domain]  Cd Length: 371  Bit Score: 53.40  E-value: 2.12e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1196967974 429 LLLIDEGELYFHPQWqkewITILIECLNKIFEHHnifiQVILTTHSPFLLSDITMDRVLFLEND 492
Cdd:COG4637   281 LLCIEEPENGLHPDL----LPALAELLREASERT----QVIVTTHSPALLDALEPEEVLVLERE 336
AAA_21 pfam13304
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ...
 179-479 3.11e-07

AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.


Pssm-ID: 433102 [Multi-domain]  Cd Length: 303  Bit Score: 52.39  E-value: 3.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 179 MQVEFAMFFKDQPFASRFHIPKEIIFRINKNHTILDSLPKTLKEFINEItKYKFLKLLFKDKFDEKCS-KSSIKGFYINY 257
Cdd:pfam13304  22 LADFDALVIGLTDERSRNGGIGGIPSLLNGIDPKEPIEFEISEFLEDGV-RYRYGLDLEREDVEEKLSsKPTLLEKRLLL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 258 AKSILLYYIYSIIDFMELSHPNMDLWGLYSKFIN--ALQTIMQQLEN-NPNFKLEDFKSIVSLNIIDHHQNAKTTLSKYP 334
Cdd:pfam13304 101 REDSEEREPKFPPEAEELRLGLDVEERIELSLSElsDLISGLLLLSIiSPLSFLLLLDEGLLLEDWAVLDLAADLALFPD 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 335 TLQFLKHLENEcKQLVNLVFVDSIHTEESIYSIKYLFKQLTKPIIDiftkwqKMKLGSLEWYSLSSGEYALLSMFSRIFN 414
Cdd:pfam13304 181 LKELLQRLVRG-LKLADLNLSDLGEGIEKSLLVDDRLRERGLILLE------NGGGGELPAFELSDGTKRLLALLAALLS 253

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1196967974 415 AANQLErssipnlvLLLIDEGELYFHPQWQKEwitiLIECLNkifEHHNIFIQVILTTHSPFLLS 479
Cdd:pfam13304 254 ALPKGG--------LLLIDEPESGLHPKLLRR----LLELLK---ELSRNGAQLILTTHSPLLLD 303
AAA_15 pfam13175
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
 56-478 1.30e-06

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433011 [Multi-domain]  Cd Length: 392  Bit Score: 51.06  E-value: 1.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974  56 NIEIDINAIVGENGTGKTTILEAIRDIVSNKLKNKYLIIYeesgryIYKAPHKIKINSPKLTLNVPDNTLPTInslyysn 135
Cdd:pfam13175  20 DLDEDLTVLIGKNNSGKSSILEALDIFLNNKEKFFEDDFL------VLYLKDVIKIDKEDLNIFENISFSIDI------- 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 136 VFDVRYVSNLFNHQRIRETKDYTtnillrrsndiyDFFSQELTMQVEFAMFFKDQPFASRFHIPKEIIFRINKNHTILDS 215
Cdd:pfam13175  87 EIDVEFLLILFGYLEIKKKYLCL------------ASKGKAKEYEKTLHPKGANKADLLLELKISDLKKYLKQFKIYIYN 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 216 LPKtlkeFINEITKYKFLKLLFKDKFDEKCSKSSIKGFYINYAKSILLYYIYSIIdFMELSHPNMDLWGLYSKFINALQT 295
Cdd:pfam13175 155 NYY----LDEKKNVFDKKSKYELPSLKEEFLNSEKEEIKVDKEDLKKLINELEKS-INYHENVLENLQIKKLLISADRNA 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 296 IMQQLENNPNFKLEDFKSIVSLNIIDHHQ---NAKTTLSKYPTLQFLkhLENECKQLVNLVFVDSIHTEESIYSIKYLFK 372
Cdd:pfam13175 230 SDEDSEKINSLLGALKQRIFEEALQEELElteKLKETQNKLKEIDKT--LAEELKNILFKKIDKLKDFGYPPFLNPEIEI 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 373 QLTKPIIDIftkwqkmklgslewYSLSSG--EYALLSMFSRIFNaanQLERSSIPNLVLLLIDEGELYFHPQWQKEWITI 450
Cdd:pfam13175 308 KKDDEDLPL--------------NKNGSGvqRLILLIFFIAEAE---RKEDEIEEKNVILAIEEPEAHLHPQAQRVLIKL 370

                         410       420
                  ....*....|....*....|....*...
gi 1196967974 451 LIECLNkifehhNIFIQVILTTHSPFLL 478
Cdd:pfam13175 371 LKELAN------DNKTQVIITTHSPHII 392
COG1106 COG1106
ATPase/GTPase, AAA15 family [General function prediction only];
336-517 6.39e-06

ATPase/GTPase, AAA15 family [General function prediction only];


Pssm-ID: 440723 [Multi-domain]  Cd Length: 330  Bit Score: 48.50  E-value: 6.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 336 LQFLKHLENECKqlvNLVFVDSIHTEESIYSIKYLFKQLTKPIidiftkwqkmklgslEWYSLSSGEYALLSMFSRIFNA 415
Cdd:COG1106   159 LELLKIADPGIE---DIEVEEEEIEDLVERKLIFKHKGGNVPL---------------PLSEESDGTKRLLALAGALLDA 220

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 416 anqLERSSIpnlvlLLIDEGELYFHPQWQKEWITILIECLNKifehHNIfiQVILTTHSPFLLSDITM----DRVLFLEN 491
Cdd:COG1106   221 ---LAKGGV-----LLIDEIEASLHPSLLRKLLKLFLDLANK----NNA--QLIFTTHSTELLDAFLEllrrDQIWFVEK 286

                         170       180
                  ....*....|....*....|....*....
gi 1196967974 492 DYDNNvhSKNY-LDDIHHTFGANI--NYL 517
Cdd:COG1106   287 DKDGA--SELYsLEDFKVRKDENLekGYL 313
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
54-80 8.55e-05

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 440188 [Multi-domain]  Cd Length: 204  Bit Score: 43.85  E-value: 8.55e-05
                          10        20
                  ....*....|....*....|....*....
gi 1196967974  54 ENNIEID--INAIVGENGTGKTTILEAIR 80
Cdd:COG0419    16 TETIDFDdgLNLIVGPNGAGKSTILEAIR 44
RecF COG1195
Recombinational DNA repair ATPase RecF [Replication, recombination and repair];
61-79 3.81e-04

Recombinational DNA repair ATPase RecF [Replication, recombination and repair];


Pssm-ID: 440808 [Multi-domain]  Cd Length: 352  Bit Score: 43.22  E-value: 3.81e-04
                          10
                  ....*....|....*....
gi 1196967974  61 INAIVGENGTGKTTILEAI 79
Cdd:COG1195    24 INVLVGPNGQGKTNLLEAI 42
ABC_Rad50 cd03240
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ...
 52-80 4.01e-04

ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.


Pssm-ID: 213207 [Multi-domain]  Cd Length: 204  Bit Score: 41.82  E-value: 4.01e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1196967974  52 SQENNIEID----INAIVGENGTGKTTILEAIR 80
Cdd:cd03240    11 SFHERSEIEffspLTLIVGQNGAGKTTIIEALK 43
YbjD COG3593
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ...
 60-91 6.80e-04

Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];


Pssm-ID: 442812 [Multi-domain]  Cd Length: 359  Bit Score: 42.30  E-value: 6.80e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1196967974  60 DINAIVGENGTGKTTILEAIRDIVSNKLKNKY 91
Cdd:COG3593    24 DLTVLVGENNSGKSSILEALRLLLGPSSSRKF 55
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
60-100 9.57e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.06  E-value: 9.57e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1196967974  60 DINAIVGENGTGKTTILEAIRDIVSNKLKNKYLIIYEESGR 100
Cdd:COG4717    24 GLNVIYGPNEAGKSTLLAFIRAMLLERLEKEADELFKPQGR 64
AAA_23 pfam13476
AAA domain;
55-251 1.06e-03

AAA domain;


Pssm-ID: 463890 [Multi-domain]  Cd Length: 190  Bit Score: 40.56  E-value: 1.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974  55 NNIEID----INAIVGENGTGKTTILEAIRdivsnklknkyLIIYEESGRYIYKAPHKIKINSPKLTLNVPDNTlptins 130
Cdd:pfam13476  10 RDQTIDfskgLTLITGPNGSGKTTILDAIK-----------LALYGKTSRLKRKSGGGFVKGDIRIGLEGKGKA------ 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 131 lyysnvfdvrYVSNLFNHQRIRETKDYTTNILLRRSNDIYDFFSQELTMQVEfamffKDQPFASRFHIPKEIIFRI---- 206
Cdd:pfam13476  73 ----------YVEITFENNDGRYTYAIERSRELSKKKGKTKKKEILEILEID-----ELQQFISELLKSDKIILPLlvfl 137

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1196967974 207 ---NKNHTILDSLPKTLKEFINEITKYKFLKLLFKDKFDEKCSKSSIK 251
Cdd:pfam13476 138 gqeREEEFERKEKKERLEELEKALEEKEDEKKLLEKLLQLKEKKKELE 185
COG3910 COG3910
Predicted ATPase [General function prediction only];
64-79 2.11e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443116 [Multi-domain]  Cd Length: 239  Bit Score: 40.13  E-value: 2.11e-03
                          10
                  ....*....|....*.
gi 1196967974  64 IVGENGTGKTTILEAI 79
Cdd:COG3910    42 FVGENGSGKSTLLEAI 57
COG4938 COG4938
Predicted ATPase [General function prediction only];
421-506 2.81e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443965 [Multi-domain]  Cd Length: 277  Bit Score: 39.95  E-value: 2.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196967974 421 RSSIPNLVLLLIDEGELYFHPQWQKEWITILIECLNkifehHNIfiQVILTTHSPFLLS----------DITMDRV--LF 488
Cdd:COG4938   157 LSAAKPGSLLIIEEPEAHLHPKAQSALAELLAELAN-----SGV--QVIIETHSDYILNglrnlikegkLLDPDDVavYF 229

                          90
                  ....*....|....*...
gi 1196967974 489 LENDYDNNVHSKNYLDDI 506
Cdd:COG4938   230 FERDGGGSELRRIEIDEN 247
recF PRK00064
recombination protein F; Reviewed
 60-79 3.02e-03

recombination protein F; Reviewed


Pssm-ID: 234608 [Multi-domain]  Cd Length: 361  Bit Score: 40.14  E-value: 3.02e-03
                          10        20
                  ....*....|....*....|
gi 1196967974  60 DINAIVGENGTGKTTILEAI 79
Cdd:PRK00064   24 GVNVLVGENGQGKTNLLEAI 43
COG1106 COG1106
ATPase/GTPase, AAA15 family [General function prediction only];
61-94 5.07e-03

ATPase/GTPase, AAA15 family [General function prediction only];


Pssm-ID: 440723 [Multi-domain]  Cd Length: 330  Bit Score: 39.26  E-value: 5.07e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1196967974  61 INAIVGENGTGKTTILEAI---RDIVSNKLKNKYLII 94
Cdd:COG1106    31 VNLIYGANASGKSNLLEALyflRNLVLNSSQPGDKLV 67
MK0520 COG2401
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ...
 48-86 5.08e-03

ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];


Pssm-ID: 441957 [Multi-domain]  Cd Length: 222  Bit Score: 38.79  E-value: 5.08e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1196967974  48 FYNVSQENNIEI---DINAIVGENGTGKTTILEAIRDIVSNK 86
Cdd:COG2401    42 ERYVLRDLNLEIepgEIVLIVGASGSGKSTLLRLLAGALKGT 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH