|
Name |
Accession |
Description |
Interval |
E-value |
| Rve |
COG3316 |
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons]; |
215-472 |
1.67e-62 |
|
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];
Pssm-ID: 442545 [Multi-domain] Cd Length: 235 Bit Score: 203.21 E-value: 1.67e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 215 SSLKFSRHNAHVMGLCLTLHVNLGLSLRKTSQALkDLYNIRISHQQVANYARTAALVIKPFVDNYEYKTGTTFIADETYI 294
Cdd:COG3316 2 VDFKGRRFPPEIILLAVRLYLRYGLSLRDVEEML-AERGVDVSHSTIYRWVQKFAPLIAKRLRRRRPPLSDSWHVDETYI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 295 KVRGIKGYIWFIMDAVSRsILGYQVSDNRGVGPCILAMRMAFRKLKQLPEnfRFIADGYSAYPLAAQQFFHQFGEnfRFD 374
Cdd:COG3316 81 KIKGKWHYLYRAVDAEGR-ILDFLLSPRRDTKAAKRFLRKALKKYGLKPR--VIVTDKLPSYGAALRELKPEGGL--GVE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 375 ITQVIGLTNedevskefrpfkqMIERLNRTFKASYRITCGYDNYEGANYNVALWVAYYNFLRPHQHnhyrvLNKAEHLEN 454
Cdd:COG3316 156 HRQVKGLNN-------------RIERDHRTLKRRERPMRGFKSFRTAQRFLSGFEAYYNFRRPHRS-----LNGATPARV 217
|
250
....*....|....*...
gi 1199425969 455 ADNMPGKWQLLIFLGQQT 472
Cdd:COG3316 218 ARAAASKWGELILLAAAF 235
|
|
| transpos_IS6 |
NF033587 |
IS6 family transposase; |
221-436 |
6.74e-18 |
|
IS6 family transposase;
Pssm-ID: 411209 [Multi-domain] Cd Length: 203 Bit Score: 81.85 E-value: 6.74e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 221 RHNAHVMGLCLTLHVNLGLSLRKTSQALKDLyNIRISHQQVANYARTAALVIKPFVDNYEYKTGTTFIADETYIKVRGIK 300
Cdd:NF033587 5 RFPPEIILLAVRLYLRGPLSLRDVEEILAER-GVSVSHSTIYRWVHKYAPQLAKRLRRRKPRPPDSWAVDETVIKINGKW 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 301 GYIWFIMDAVSRsILGYQVSDNRGVGPCILAMRMAFRKLKQLPEnfRFIADGYSAYPLAaqqfFHQFGENFRFDITQVIG 380
Cdd:NF033587 84 YYLYRAVDKEGE-TLDFLLSPRRDTDAAKRFLRKLLKKHDGSPR--VILTDKAPSYPAA----LRRLGLEGRLPRRIEHR 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1199425969 381 LTNedevskefrPFKQMIERLNRTFKASYRITCGYDNYEGANYNVALWVAYYNFLR 436
Cdd:NF033587 157 QRK---------YLNNLIEQDHRRTKRFINSMLGFKSFRTARRTLAGFEAMYNLRK 203
|
|
| DDE_Tnp_IS240 |
pfam13610 |
DDE domain; This DDE domain is found in a wide variety of transposases including those found ... |
289-438 |
1.03e-08 |
|
DDE domain; This DDE domain is found in a wide variety of transposases including those found in IS240, IS26, IS6100 and IS26.
Pssm-ID: 433347 [Multi-domain] Cd Length: 138 Bit Score: 53.91 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 289 ADETYIKVRGIKGYIWFIMDAVSRsILGYQVSDNRGVGPCILAMRMAFRKLKQLPEnfRFIADGYSAYPLAAQQFFHQFG 368
Cdd:pfam13610 5 VDETYVKVKGKWHYVYRAVDKEGN-TLDFYVSKRRDTDAAKAFLRRALKNYKGRPE--EIVTDKAGAYLSAIKELKPSGL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 369 ENFRFDITQVIGLTNEDEvsKEFRPFKQMIeRLNRTFKasyritcgydNYEGANYNVALWVAYYNFLRPH 438
Cdd:pfam13610 82 LLDDIRHVTVKYLNNRIE--SDHRPLKKRL-RPMRGFK----------SFKSARKTIAGFEVVHNLRKGH 138
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
287-450 |
6.31e-08 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 54.10 E-value: 6.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 287 FIADETYIKVRGIKGYIWFIMDAVSRSILGYQVSDNRGVGPCILAMRMAFrKLKQLPENFRFIADGYSAYplAAQQFFHQ 366
Cdd:PHA02517 113 WVADFTYVSTWQGWVYVAFIIDVFARRIVGWRVSSSMDTDFVLDALEQAL-WARGRPGGLIHHSDKGSQY--VSLAYTQR 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 367 FGEnfrfditqvigLTNEDEVSKEFRPFKQ-MIERLNRTFKASYRITCGYDNYEGANYNVALWVAYYNFLRPHQHNHYRV 445
Cdd:PHA02517 190 LKE-----------AGIRASTGSRGDSYDNaPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTP 258
|
....*
gi 1199425969 446 LNKAE 450
Cdd:PHA02517 259 PAEAE 263
|
|
| transpos_IS66 |
NF033517 |
IS66 family transposase; Members of this protein family are DDE transposases from the IS66 ... |
224-356 |
2.95e-05 |
|
IS66 family transposase; Members of this protein family are DDE transposases from the IS66 family insertion sequences, which typically consist of two accessary genes (TnpA and TnpB) and the third gene encoding the transposase.
Pssm-ID: 468053 [Multi-domain] Cd Length: 388 Bit Score: 46.04 E-value: 2.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 224 AHVMglclTLHVNLGLSLRKTSQALKDLYNIRISHQQVANYARTAALVIKPFVD-NYEY-KTGTTFIADETYIKV----R 297
Cdd:NF033517 93 AHVA----VLKYADHLPLYRQQQILARLFGIELSRGTLANWVGRAAELLEPLYDaLKEElLAAPVLHADETGVPVlepgR 168
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1199425969 298 GIKGYIWfimdAVSRS--ILGYQVSDNRGvGPCILAMRMAFR-KLkqlpenfrfIADGYSAY 356
Cdd:NF033517 169 GKTGWLW----VYASAppAVLFDYAPSRG-GEVPEALLEGFNgVL---------QSDGYAGY 216
|
|
| PRK07219 |
PRK07219 |
DNA topoisomerase I; Validated |
80-176 |
2.21e-03 |
|
DNA topoisomerase I; Validated
Pssm-ID: 235971 [Multi-domain] Cd Length: 822 Bit Score: 40.75 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 80 CPIKRQSECDIPEECSCPRCQApkpYLYKNNGSKGQ-LSC-KVCDAKFSQQDNRFSAIKL---RCPHCGNTLVPKKDRKF 154
Cdd:PRK07219 675 CEAEKEEEDPDEVIGPCPKCGG---ELAIKQLKYGSfLGCtNYPKCKYTLPLPRRGKITVtdeKCPECGLPLLRVKGGFG 751
|
90 100
....*....|....*....|..
gi 1199425969 155 FVLHKCVNPKCPYYLHNLKKVE 176
Cdd:PRK07219 752 DELGCCNNPKCNYTEKQKKEKE 773
|
|
| YrdD |
COG0551 |
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination ... |
65-176 |
3.41e-03 |
|
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination and repair];
Pssm-ID: 440317 [Multi-domain] Cd Length: 695 Bit Score: 39.85 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 65 KELIPYFHKRYGKKICPIKRQSECDIPEECSCPRCQapKPYLYKNnGSKGQ-LSCK---VCdaKFSQQDNRFSAIKLRCP 140
Cdd:COG0551 558 EEYPFFKKLLEIAEEEGEEELSEEDEVLGEKCPKCG--KPLVIKK-GRYGKfLGCSnypEC--KYTKPLPKPEVTGVKCP 632
|
90 100 110
....*....|....*....|....*....|....*..
gi 1199425969 141 HCGNTLVPKKDRKFFVLHKCVN-PKCPYYLhNLKKVE 176
Cdd:COG0551 633 KCGKKLVLRKSKKGKVFYGCSNyPKCKFTE-WDKPVK 668
|
|
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
397-439 |
7.21e-03 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 38.34 E-value: 7.21e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1199425969 397 MIERLNRTFKASYRITCGYDNYEGANYNVALWVAYYNFLRPHQ 439
Cdd:NF033577 230 KVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHS 272
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Rve |
COG3316 |
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons]; |
215-472 |
1.67e-62 |
|
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];
Pssm-ID: 442545 [Multi-domain] Cd Length: 235 Bit Score: 203.21 E-value: 1.67e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 215 SSLKFSRHNAHVMGLCLTLHVNLGLSLRKTSQALkDLYNIRISHQQVANYARTAALVIKPFVDNYEYKTGTTFIADETYI 294
Cdd:COG3316 2 VDFKGRRFPPEIILLAVRLYLRYGLSLRDVEEML-AERGVDVSHSTIYRWVQKFAPLIAKRLRRRRPPLSDSWHVDETYI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 295 KVRGIKGYIWFIMDAVSRsILGYQVSDNRGVGPCILAMRMAFRKLKQLPEnfRFIADGYSAYPLAAQQFFHQFGEnfRFD 374
Cdd:COG3316 81 KIKGKWHYLYRAVDAEGR-ILDFLLSPRRDTKAAKRFLRKALKKYGLKPR--VIVTDKLPSYGAALRELKPEGGL--GVE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 375 ITQVIGLTNedevskefrpfkqMIERLNRTFKASYRITCGYDNYEGANYNVALWVAYYNFLRPHQHnhyrvLNKAEHLEN 454
Cdd:COG3316 156 HRQVKGLNN-------------RIERDHRTLKRRERPMRGFKSFRTAQRFLSGFEAYYNFRRPHRS-----LNGATPARV 217
|
250
....*....|....*...
gi 1199425969 455 ADNMPGKWQLLIFLGQQT 472
Cdd:COG3316 218 ARAAASKWGELILLAAAF 235
|
|
| transpos_IS6 |
NF033587 |
IS6 family transposase; |
221-436 |
6.74e-18 |
|
IS6 family transposase;
Pssm-ID: 411209 [Multi-domain] Cd Length: 203 Bit Score: 81.85 E-value: 6.74e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 221 RHNAHVMGLCLTLHVNLGLSLRKTSQALKDLyNIRISHQQVANYARTAALVIKPFVDNYEYKTGTTFIADETYIKVRGIK 300
Cdd:NF033587 5 RFPPEIILLAVRLYLRGPLSLRDVEEILAER-GVSVSHSTIYRWVHKYAPQLAKRLRRRKPRPPDSWAVDETVIKINGKW 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 301 GYIWFIMDAVSRsILGYQVSDNRGVGPCILAMRMAFRKLKQLPEnfRFIADGYSAYPLAaqqfFHQFGENFRFDITQVIG 380
Cdd:NF033587 84 YYLYRAVDKEGE-TLDFLLSPRRDTDAAKRFLRKLLKKHDGSPR--VILTDKAPSYPAA----LRRLGLEGRLPRRIEHR 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1199425969 381 LTNedevskefrPFKQMIERLNRTFKASYRITCGYDNYEGANYNVALWVAYYNFLR 436
Cdd:NF033587 157 QRK---------YLNNLIEQDHRRTKRFINSMLGFKSFRTARRTLAGFEAMYNLRK 203
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
289-444 |
8.86e-10 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 59.78 E-value: 8.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 289 ADETYIKVRGIKGYIWFIMDAVSRSILGYQVSDNRGVGPCILAMRMAFRKLKQ-LPENFR------FIADGYsayplaaQ 361
Cdd:COG2801 154 TDITYIPTAEGWLYLAAVIDLFSREIVGWSVSDSMDAELVVDALEMAIERRGPpKPLILHsdngsqYTSKAY-------Q 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 362 QFFHQFGenfrfdITQVIGltnedevskefRPFK----QMIERLNRTFKASYRITCGYDNYEGANYNVALWVAYYNFLRP 437
Cdd:COG2801 227 ELLKKLG------ITQSMS-----------RPGNpqdnAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERP 289
|
....*..
gi 1199425969 438 HQHNHYR 444
Cdd:COG2801 290 HSSLGYL 296
|
|
| DDE_Tnp_IS240 |
pfam13610 |
DDE domain; This DDE domain is found in a wide variety of transposases including those found ... |
289-438 |
1.03e-08 |
|
DDE domain; This DDE domain is found in a wide variety of transposases including those found in IS240, IS26, IS6100 and IS26.
Pssm-ID: 433347 [Multi-domain] Cd Length: 138 Bit Score: 53.91 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 289 ADETYIKVRGIKGYIWFIMDAVSRsILGYQVSDNRGVGPCILAMRMAFRKLKQLPEnfRFIADGYSAYPLAAQQFFHQFG 368
Cdd:pfam13610 5 VDETYVKVKGKWHYVYRAVDKEGN-TLDFYVSKRRDTDAAKAFLRRALKNYKGRPE--EIVTDKAGAYLSAIKELKPSGL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 369 ENFRFDITQVIGLTNEDEvsKEFRPFKQMIeRLNRTFKasyritcgydNYEGANYNVALWVAYYNFLRPH 438
Cdd:pfam13610 82 LLDDIRHVTVKYLNNRIE--SDHRPLKKRL-RPMRGFK----------SFKSARKTIAGFEVVHNLRKGH 138
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
287-450 |
6.31e-08 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 54.10 E-value: 6.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 287 FIADETYIKVRGIKGYIWFIMDAVSRSILGYQVSDNRGVGPCILAMRMAFrKLKQLPENFRFIADGYSAYplAAQQFFHQ 366
Cdd:PHA02517 113 WVADFTYVSTWQGWVYVAFIIDVFARRIVGWRVSSSMDTDFVLDALEQAL-WARGRPGGLIHHSDKGSQY--VSLAYTQR 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 367 FGEnfrfditqvigLTNEDEVSKEFRPFKQ-MIERLNRTFKASYRITCGYDNYEGANYNVALWVAYYNFLRPHQHNHYRV 445
Cdd:PHA02517 190 LKE-----------AGIRASTGSRGDSYDNaPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTP 258
|
....*
gi 1199425969 446 LNKAE 450
Cdd:PHA02517 259 PAEAE 263
|
|
| DDE_Tnp_IS66 |
pfam03050 |
Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. ... |
224-367 |
2.70e-05 |
|
Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.
Pssm-ID: 427113 [Multi-domain] Cd Length: 281 Bit Score: 45.70 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 224 AHVMglclTLHVNLGLSLRKTSQALKDLyNIRISHQQVANYARTAALVIKPFVDNYEYKTGTTFI--ADETYIKV----- 296
Cdd:pfam03050 10 ALIL----VLKYADHLPLYRQEDILARL-GVELSRGTLANWVGRAAELLEPLVDALRAALLESPVihADETPLRVlkpgr 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1199425969 297 -RGIKGYIW-FIMDAVSRSILGYQVSDNRGvGPCILAMRMAFRKlkqlpenfRFIADGYSAYP-LAAQQFFHQF 367
Cdd:pfam03050 85 gKGKKGWLWvYVTDDRPPPAVLFHYHPSRG-GEHPQALLGGFRG--------VLQTDGYAGYNkLARGQVTHAG 149
|
|
| transpos_IS66 |
NF033517 |
IS66 family transposase; Members of this protein family are DDE transposases from the IS66 ... |
224-356 |
2.95e-05 |
|
IS66 family transposase; Members of this protein family are DDE transposases from the IS66 family insertion sequences, which typically consist of two accessary genes (TnpA and TnpB) and the third gene encoding the transposase.
Pssm-ID: 468053 [Multi-domain] Cd Length: 388 Bit Score: 46.04 E-value: 2.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 224 AHVMglclTLHVNLGLSLRKTSQALKDLYNIRISHQQVANYARTAALVIKPFVD-NYEY-KTGTTFIADETYIKV----R 297
Cdd:NF033517 93 AHVA----VLKYADHLPLYRQQQILARLFGIELSRGTLANWVGRAAELLEPLYDaLKEElLAAPVLHADETGVPVlepgR 168
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1199425969 298 GIKGYIWfimdAVSRS--ILGYQVSDNRGvGPCILAMRMAFR-KLkqlpenfrfIADGYSAY 356
Cdd:NF033517 169 GKTGWLW----VYASAppAVLFDYAPSRG-GEVPEALLEGFNgVL---------QSDGYAGY 216
|
|
| rve_3 |
pfam13683 |
Integrase core domain; |
398-439 |
1.33e-04 |
|
Integrase core domain;
Pssm-ID: 433402 [Multi-domain] Cd Length: 67 Bit Score: 39.89 E-value: 1.33e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1199425969 398 IERLNRTFKASYRITCGYDNYEGANYNVALWVAYYNFLRPHQ 439
Cdd:pfam13683 19 VESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHS 60
|
|
| rve |
pfam00665 |
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
289-368 |
1.27e-03 |
|
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.
Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 38.06 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 289 ADETYIKVRGIKGYIW--FIMDAVSRSILGYQVSDNRGVGPCILAMRMAFRKLKQLPEnfRFIADGYSAYPLAA-QQFFH 365
Cdd:pfam00665 7 GDFTYIRIPGGGGKLYllVIVDDFSREILAWALSSEMDAELVLDALERAIAFRGGVPL--IIHSDNGSEYTSKAfREFLK 84
|
...
gi 1199425969 366 QFG 368
Cdd:pfam00665 85 DLG 87
|
|
| PRK07219 |
PRK07219 |
DNA topoisomerase I; Validated |
80-176 |
2.21e-03 |
|
DNA topoisomerase I; Validated
Pssm-ID: 235971 [Multi-domain] Cd Length: 822 Bit Score: 40.75 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 80 CPIKRQSECDIPEECSCPRCQApkpYLYKNNGSKGQ-LSC-KVCDAKFSQQDNRFSAIKL---RCPHCGNTLVPKKDRKF 154
Cdd:PRK07219 675 CEAEKEEEDPDEVIGPCPKCGG---ELAIKQLKYGSfLGCtNYPKCKYTLPLPRRGKITVtdeKCPECGLPLLRVKGGFG 751
|
90 100
....*....|....*....|..
gi 1199425969 155 FVLHKCVNPKCPYYLHNLKKVE 176
Cdd:PRK07219 752 DELGCCNNPKCNYTEKQKKEKE 773
|
|
| YrdD |
COG0551 |
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination ... |
65-176 |
3.41e-03 |
|
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination and repair];
Pssm-ID: 440317 [Multi-domain] Cd Length: 695 Bit Score: 39.85 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199425969 65 KELIPYFHKRYGKKICPIKRQSECDIPEECSCPRCQapKPYLYKNnGSKGQ-LSCK---VCdaKFSQQDNRFSAIKLRCP 140
Cdd:COG0551 558 EEYPFFKKLLEIAEEEGEEELSEEDEVLGEKCPKCG--KPLVIKK-GRYGKfLGCSnypEC--KYTKPLPKPEVTGVKCP 632
|
90 100 110
....*....|....*....|....*....|....*..
gi 1199425969 141 HCGNTLVPKKDRKFFVLHKCVN-PKCPYYLhNLKKVE 176
Cdd:COG0551 633 KCGKKLVLRKSKKGKVFYGCSNyPKCKFTE-WDKPVK 668
|
|
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
397-439 |
7.21e-03 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 38.34 E-value: 7.21e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1199425969 397 MIERLNRTFKASYRITCGYDNYEGANYNVALWVAYYNFLRPHQ 439
Cdd:NF033577 230 KVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHS 272
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