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Conserved domains on  [gi|1214079075|ref|WP_088726612|]
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DUF1127 domain-containing protein [Thioclava sp. IC9]

Protein Classification

DUF1127 domain-containing protein( domain architecture ID 581249)

DUF1127 domain-containing protein similar to Escherichia coli YjiS

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1127 super family cl23975
Domain of unknown function (DUF1127); This family is found in several hypothetical bacterial ...
 8-63 5.20e-03

Domain of unknown function (DUF1127); This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.


The actual alignment was detected with superfamily member COG5457:

Pssm-ID: 474119  Cd Length: 61  Bit Score: 31.50  E-value: 5.20e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1214079075  8 ALKIRRPKDWMHALHWVVEQNANYRASHKLRSMTDERLEDMGISREDADTAFYKRF 63
Cdd:COG5457    3 TITTTRAALLARLARRLARWRERRRTRRELARLSDRELADIGLTRSDIRREARKPF 58
 
Name Accession Description Interval E-value
YjiS COG5457
Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];
8-63 5.20e-03

Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];


Pssm-ID: 444208  Cd Length: 61  Bit Score: 31.50  E-value: 5.20e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1214079075  8 ALKIRRPKDWMHALHWVVEQNANYRASHKLRSMTDERLEDMGISREDADTAFYKRF 63
Cdd:COG5457    3 TITTTRAALLARLARRLARWRERRRTRRELARLSDRELADIGLTRSDIRREARKPF 58
 
Name Accession Description Interval E-value
YjiS COG5457
Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];
8-63 5.20e-03

Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];


Pssm-ID: 444208  Cd Length: 61  Bit Score: 31.50  E-value: 5.20e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1214079075  8 ALKIRRPKDWMHALHWVVEQNANYRASHKLRSMTDERLEDMGISREDADTAFYKRF 63
Cdd:COG5457    3 TITTTRAALLARLARRLARWRERRRTRRELARLSDRELADIGLTRSDIRREARKPF 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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