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Conserved domains on  [gi|1221751036|ref|WP_089877603|]
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DICT sensory domain-containing protein [Halogeometricum limi]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DICT COG4250
DICT sensory domain found in diguanylate cyclases and two-component systems [Signal ...
 87-242 3.09e-54

DICT sensory domain found in diguanylate cyclases and two-component systems [Signal transduction mechanisms];


:

Pssm-ID: 443392  Cd Length: 178  Bit Score: 172.41  E-value: 3.09e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221751036  87 PYKPILDRLDETMFTSFDPSRMLSASREIEDRAWR-AGEGTLYAGFQHYSTLEKQLGTYEQLGTKpELDVTAIAFPDAEL 165
Cdd:COG4250     7 ILQELLDALPETRFTVYFKSSLVALSRAIEDRALRvDGKGLLIAGFQRESFYRQEADRYRRLADR-SLQVHVYAAPDTEF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221751036 166 SDHDGTFEVYPDRSREIRDVWFVAYDGGgddDAKCALVAEEREP--------RRFYGFWTYDPRTVDYIFDYVDDSYLSG 237
Cdd:COG4250    86 PDHDNVTVHALEPADELAQEWFLVIDGP---DYKAALLAEERSPglpemdqeRRFYGFWTFDPELVDEAADLLLDRIGSY 162


                  ....*
gi 1221751036 238 RSDRR 242
Cdd:COG4250   163 RPELA 167
 
Name Accession Description Interval E-value
DICT COG4250
DICT sensory domain found in diguanylate cyclases and two-component systems [Signal ...
 87-242 3.09e-54

DICT sensory domain found in diguanylate cyclases and two-component systems [Signal transduction mechanisms];


Pssm-ID: 443392  Cd Length: 178  Bit Score: 172.41  E-value: 3.09e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221751036  87 PYKPILDRLDETMFTSFDPSRMLSASREIEDRAWR-AGEGTLYAGFQHYSTLEKQLGTYEQLGTKpELDVTAIAFPDAEL 165
Cdd:COG4250     7 ILQELLDALPETRFTVYFKSSLVALSRAIEDRALRvDGKGLLIAGFQRESFYRQEADRYRRLADR-SLQVHVYAAPDTEF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221751036 166 SDHDGTFEVYPDRSREIRDVWFVAYDGGgddDAKCALVAEEREP--------RRFYGFWTYDPRTVDYIFDYVDDSYLSG 237
Cdd:COG4250    86 PDHDNVTVHALEPADELAQEWFLVIDGP---DYKAALLAEERSPglpemdqeRRFYGFWTFDPELVDEAADLLLDRIGSY 162


                  ....*
gi 1221751036 238 RSDRR 242
Cdd:COG4250   163 RPELA 167
DICT pfam10069
Sensory domain in DIguanylate Cyclases and Two-component system; DICT is a sensory domain ...
 90-205 1.83e-12

Sensory domain in DIguanylate Cyclases and Two-component system; DICT is a sensory domain found associated with GGDEF, EAL, HD-GYP, STAS, and two component systems (histidine-kinase type). It assumes an alpha+beta fold with a 4-stranded beta-sheet and might have a role in light response (Natural history of sensor domains in bacterial signaling systems by Aravind L, LM Iyer, Anantharaman V, from 'Sensory Mechanisms in Bacteria: Molecular Aspects of Signal Recognition.' Caister Academic Press. 2010) - see (http://de.scribd.com/doc/28576661/Bacterial-Signaling-Chapter)


Pssm-ID: 431029  Cd Length: 126  Bit Score: 62.26  E-value: 1.83e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221751036  90 PILDRLDETMFTSFDPSR-------MLSASREIEDRAWR-AGEGTLYAGFQHYSTLEKQLGTYEQLGTKPElDVTAIAFP 161
Cdd:pfam10069   2 SSLYQLAEALPTLAPPSPlvyskatLTALSHALEDLLIEqQIPATVWAKFQRGKFYRQEADRYQQLAQKSR-QIYVCAAP 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1221751036 162 DAELSDHDGTFEVY------PDRSrEIRDVWFVAYDGggdDDAKCALVAE 205
Cdd:pfam10069  81 ESEFAEPDSSSDNVetvaldPNSD-PLRREWFLIVLS---PQFCSCLLAQ 126
 
Name Accession Description Interval E-value
DICT COG4250
DICT sensory domain found in diguanylate cyclases and two-component systems [Signal ...
 87-242 3.09e-54

DICT sensory domain found in diguanylate cyclases and two-component systems [Signal transduction mechanisms];


Pssm-ID: 443392  Cd Length: 178  Bit Score: 172.41  E-value: 3.09e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221751036  87 PYKPILDRLDETMFTSFDPSRMLSASREIEDRAWR-AGEGTLYAGFQHYSTLEKQLGTYEQLGTKpELDVTAIAFPDAEL 165
Cdd:COG4250     7 ILQELLDALPETRFTVYFKSSLVALSRAIEDRALRvDGKGLLIAGFQRESFYRQEADRYRRLADR-SLQVHVYAAPDTEF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221751036 166 SDHDGTFEVYPDRSREIRDVWFVAYDGGgddDAKCALVAEEREP--------RRFYGFWTYDPRTVDYIFDYVDDSYLSG 237
Cdd:COG4250    86 PDHDNVTVHALEPADELAQEWFLVIDGP---DYKAALLAEERSPglpemdqeRRFYGFWTFDPELVDEAADLLLDRIGSY 162


                  ....*
gi 1221751036 238 RSDRR 242
Cdd:COG4250   163 RPELA 167
DICT pfam10069
Sensory domain in DIguanylate Cyclases and Two-component system; DICT is a sensory domain ...
 90-205 1.83e-12

Sensory domain in DIguanylate Cyclases and Two-component system; DICT is a sensory domain found associated with GGDEF, EAL, HD-GYP, STAS, and two component systems (histidine-kinase type). It assumes an alpha+beta fold with a 4-stranded beta-sheet and might have a role in light response (Natural history of sensor domains in bacterial signaling systems by Aravind L, LM Iyer, Anantharaman V, from 'Sensory Mechanisms in Bacteria: Molecular Aspects of Signal Recognition.' Caister Academic Press. 2010) - see (http://de.scribd.com/doc/28576661/Bacterial-Signaling-Chapter)


Pssm-ID: 431029  Cd Length: 126  Bit Score: 62.26  E-value: 1.83e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221751036  90 PILDRLDETMFTSFDPSR-------MLSASREIEDRAWR-AGEGTLYAGFQHYSTLEKQLGTYEQLGTKPElDVTAIAFP 161
Cdd:pfam10069   2 SSLYQLAEALPTLAPPSPlvyskatLTALSHALEDLLIEqQIPATVWAKFQRGKFYRQEADRYQQLAQKSR-QIYVCAAP 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1221751036 162 DAELSDHDGTFEVY------PDRSrEIRDVWFVAYDGggdDDAKCALVAE 205
Cdd:pfam10069  81 ESEFAEPDSSSDNVetvaldPNSD-PLRREWFLIVLS---PQFCSCLLAQ 126
CHASE6_C pfam17150
C-terminal domain of two-partite extracellular sensor domain; CHASE6 was originally described ...
 210-223 6.48e-03

C-terminal domain of two-partite extracellular sensor domain; CHASE6 was originally described as a two-partite extracellular (periplasmic) sensor domain found in histidine kinases and HD-GYP-type c-di-GMP-specific phosphodiesterases and assigned to COG4250 in the COG database. Subsequently, its N-terminal part has been described as a separate DICT (DIguanylate Cyclases and Two-component systems) domain (PF10069) (Aravind L., Iyer LM, Anantharaman V. (2010) Natural history of sensor domains in the bacterial signalling systems. In: Sensory Mechanisms in Bacteria: Molecular Aspects of Signal Recognition ((Spiro S, Dixon R, eds)), pp. 1-38. Caister Academic Press, Norfolk, UK). The current entry contains only the C-terminal part of the original CHASE6 domain described in, which is found primarily in cyanobacteria.


Pssm-ID: 435751  Cd Length: 80  Bit Score: 34.82  E-value: 6.48e-03
                          10
                  ....*....|....
gi 1221751036 210 RRFYGFWTYDPRTV 223
Cdd:pfam17150   5 RKFEGIWTFDRQLV 18
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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