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Conserved domains on  [gi|1254102755|ref|WP_097036453|]
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fibrobacter succinogenes major paralogous domain-containing protein [Fibrobacter sp. UWT3]

Protein Classification

fibrobacter succinogenes major paralogous domain-containing protein( domain architecture ID 10020264)

fibrobacter succinogenes major paralogous domain-containing protein is a putative lipoprotein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 118-322 1.88e-88

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


:

Pssm-ID: 273995  Cd Length: 171  Bit Score: 262.24  E-value: 1.88e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254102755 118 TLTDTRDGQTYKTVTIGDQVWMAENLNYETENSYCYDDDPSNCAKYGRLYTWAAAMDSvgtwttngkgcgygsecsptgt 197
Cdd:TIGR02145   1 TLVDSRDGQVYKTVKIGSQTWMAENLNYETEGSWCYEDDEENCAKYGRLYTWAAAMDS---------------------- 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254102755 198 irgICPEGWHLPDTTEWNTLITSVGGvqdedyaykWHGAGTALKSTGGWYNDRNGTDAFGFSALPAGYRDYDGNYYGEGH 277
Cdd:TIGR02145  59 ---ICPEGWHLPSTTEWNTLFDAVGG---------KVNAGGKLKARSGWSKSGNGTDDYGFSALPAGYRFSDGEFSDDGE 126

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1254102755 278 YADFWSSTEGNSSSAYSMYLNYDYDIAGLYGSYKYYGRSVRCLKD 322
Cdd:TIGR02145 127 YAFFWSSDEENEDSAYYMYLRYSSDGIFLIGEDKDDGLSVRCVKD 171
 
Name Accession Description Interval E-value
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 118-322 1.88e-88

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


Pssm-ID: 273995  Cd Length: 171  Bit Score: 262.24  E-value: 1.88e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254102755 118 TLTDTRDGQTYKTVTIGDQVWMAENLNYETENSYCYDDDPSNCAKYGRLYTWAAAMDSvgtwttngkgcgygsecsptgt 197
Cdd:TIGR02145   1 TLVDSRDGQVYKTVKIGSQTWMAENLNYETEGSWCYEDDEENCAKYGRLYTWAAAMDS---------------------- 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254102755 198 irgICPEGWHLPDTTEWNTLITSVGGvqdedyaykWHGAGTALKSTGGWYNDRNGTDAFGFSALPAGYRDYDGNYYGEGH 277
Cdd:TIGR02145  59 ---ICPEGWHLPSTTEWNTLFDAVGG---------KVNAGGKLKARSGWSKSGNGTDDYGFSALPAGYRFSDGEFSDDGE 126

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1254102755 278 YADFWSSTEGNSSSAYSMYLNYDYDIAGLYGSYKYYGRSVRCLKD 322
Cdd:TIGR02145 127 YAFFWSSDEENEDSAYYMYLRYSSDGIFLIGEDKDDGLSVRCVKD 171
Fib_succ_major pfam09603
Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino ...
 133-321 4.53e-48

Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.


Pssm-ID: 462836  Cd Length: 171  Bit Score: 159.15  E-value: 4.53e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254102755 133 IGDQVWMAENLNYETEN------SYCYDDDPSNCAKYGRLYTWAAAMDSvgtwttngkgcgygsecsptgtiRGICPEGW 206
Cdd:pfam09603   1 IGGQYWMAENLRYATYRdgdpieTAKDANTDENCAGYGRLYNWEAAMDA-----------------------RGLCPEGW 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254102755 207 HLPDTTEWNTLITSVGGVQdedyaykwhGAGTALKSTGGWYN--DRNGTDAFGFSALPAGYRDYDG-NYYGEGHYADFWS 283
Cdd:pfam09603  58 HVPTDEEWKTLEAYLGGSE---------GAGSLLKATSGGPNltVGNGTNETGFNALPAGYRDGDGsGFNADGKYAYFWT 128

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1254102755 284 STEGNSSSAYSMYLNY-----DYDIAGLYGSYKYYGRSVRCLK 321
Cdd:pfam09603 129 STEDGSKGAEAGSLGYryfglRRSVIRRGGANKGKGLSVRCVK 171
 
Name Accession Description Interval E-value
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 118-322 1.88e-88

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


Pssm-ID: 273995  Cd Length: 171  Bit Score: 262.24  E-value: 1.88e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254102755 118 TLTDTRDGQTYKTVTIGDQVWMAENLNYETENSYCYDDDPSNCAKYGRLYTWAAAMDSvgtwttngkgcgygsecsptgt 197
Cdd:TIGR02145   1 TLVDSRDGQVYKTVKIGSQTWMAENLNYETEGSWCYEDDEENCAKYGRLYTWAAAMDS---------------------- 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254102755 198 irgICPEGWHLPDTTEWNTLITSVGGvqdedyaykWHGAGTALKSTGGWYNDRNGTDAFGFSALPAGYRDYDGNYYGEGH 277
Cdd:TIGR02145  59 ---ICPEGWHLPSTTEWNTLFDAVGG---------KVNAGGKLKARSGWSKSGNGTDDYGFSALPAGYRFSDGEFSDDGE 126

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1254102755 278 YADFWSSTEGNSSSAYSMYLNYDYDIAGLYGSYKYYGRSVRCLKD 322
Cdd:TIGR02145 127 YAFFWSSDEENEDSAYYMYLRYSSDGIFLIGEDKDDGLSVRCVKD 171
Fib_succ_major pfam09603
Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino ...
 133-321 4.53e-48

Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.


Pssm-ID: 462836  Cd Length: 171  Bit Score: 159.15  E-value: 4.53e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254102755 133 IGDQVWMAENLNYETEN------SYCYDDDPSNCAKYGRLYTWAAAMDSvgtwttngkgcgygsecsptgtiRGICPEGW 206
Cdd:pfam09603   1 IGGQYWMAENLRYATYRdgdpieTAKDANTDENCAGYGRLYNWEAAMDA-----------------------RGLCPEGW 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254102755 207 HLPDTTEWNTLITSVGGVQdedyaykwhGAGTALKSTGGWYN--DRNGTDAFGFSALPAGYRDYDG-NYYGEGHYADFWS 283
Cdd:pfam09603  58 HVPTDEEWKTLEAYLGGSE---------GAGSLLKATSGGPNltVGNGTNETGFNALPAGYRDGDGsGFNADGKYAYFWT 128

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1254102755 284 STEGNSSSAYSMYLNY-----DYDIAGLYGSYKYYGRSVRCLK 321
Cdd:pfam09603 129 STEDGSKGAEAGSLGYryfglRRSVIRRGGANKGKGLSVRCVK 171
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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