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Conserved domains on  [gi|1296614734|ref|WP_100778040|]
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MULTISPECIES: flagellar type III secretion system pore protein FliP [Lelliottia]

Protein Classification

flagellar type III secretion system pore protein FliP( domain architecture ID 10003557)

flagellar type III secretion system pore protein FliP plays a role in the flagellum-specific transport system

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
6-246 1.63e-108

Flagellar biosynthesis protein FliP [Cell motility];


:

Pssm-ID: 440949  Cd Length: 249  Bit Score: 312.82  E-value: 1.63e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734   6 RAVAPALLFAGLLFSPQLFAANGDITL-FSSATTDGGQDYNVKIEILILMTLLGLLPVMVLMMTCFTRFIIVLAILRQAL 84
Cdd:COG1338     4 RLLALLLLLALLLLPAPALAQPGLPSLsLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQAL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  85 GLQQSPPNKILTGIALALTLLVMRPVWTTIYDEAIVPFQNDEITMKQAFGKAETPLKNYMLAQTSNKAMAQMMDIAKVTG 164
Cdd:COG1338    84 GTQQTPPNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPP 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734 165 --DPREQDLTVVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIVGT 242
Cdd:COG1338   164 peTPEDVPLRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGS 243


                  ....
gi 1296614734 243 LTSS 246
Cdd:COG1338   244 LVRS 247
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
6-246 1.63e-108

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 312.82  E-value: 1.63e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734   6 RAVAPALLFAGLLFSPQLFAANGDITL-FSSATTDGGQDYNVKIEILILMTLLGLLPVMVLMMTCFTRFIIVLAILRQAL 84
Cdd:COG1338     4 RLLALLLLLALLLLPAPALAQPGLPSLsLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQAL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  85 GLQQSPPNKILTGIALALTLLVMRPVWTTIYDEAIVPFQNDEITMKQAFGKAETPLKNYMLAQTSNKAMAQMMDIAKVTG 164
Cdd:COG1338    84 GTQQTPPNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPP 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734 165 --DPREQDLTVVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIVGT 242
Cdd:COG1338   164 peTPEDVPLRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGS 243


                  ....
gi 1296614734 243 LTSS 246
Cdd:COG1338   244 LVRS 247
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 11-249 2.52e-103

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 299.80  E-value: 2.52e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  11 ALLFAGLLFSPQLFAANGDITLFSSAT-TDGGQDYNVKIEILILMTLLGLLPVMVLMMTCFTRFIIVLAILRQALGLQQS 89
Cdd:PRK05699    5 LLALALLLLALASAAAAAPLPGLNLLPgANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQT 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  90 PPNKILTGIALALTLLVMRPVWTTIYDEAIVPFQNDEITMKQAFGKAETPLKNYMLAQTSNKAMAQMMDIAKV-TGDPRE 168
Cdd:PRK05699   85 PPNQVLIGLALFLTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGEpPKTPED 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734 169 QDLTVVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIVGTLTSSVQ 248
Cdd:PRK05699  165 VPLSVLVPAFVLSELKTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSFG 244


                  .
gi 1296614734 249 G 249
Cdd:PRK05699  245 G 245
FliP pfam00813
FliP family;
61-243 1.89e-95

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 277.76  E-value: 1.89e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  61 PVMVLMMTCFTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYDEAIVPFQNDEITMKQAFGKAETPL 140
Cdd:pfam00813   8 PAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEALERASEPL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734 141 KNYMLAQTSNKAMAQMMDIAKVTGDPREQ-DLTVVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPL 219
Cdd:pfam00813  88 REFMLKQTREKDLALFLDLAGQWPETAEDvPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSMGMMMLPPV 167

                         170       180
                  ....*....|....*....|....
gi 1296614734 220 IVSLPFKLMLFVLCDGWTLIVGTL 243
Cdd:pfam00813 168 TISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 61-246 3.15e-75

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 226.88  E-value: 3.15e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  61 PVMVLMMTCFTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYDEAIVPFQNDEITMKQAFGKAETPL 140
Cdd:TIGR01103   9 PAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEAYQKAEEPL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734 141 KNYMLAQTSNKAMAQMMDIAKVTG--DPREQDLTVVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSP 218
Cdd:TIGR01103  89 REFMLRQTRDKDLALFMRLAKIPKpqTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMAMGMMMLPP 168

                         170       180
                  ....*....|....*....|....*...
gi 1296614734 219 LIVSLPFKLMLFVLCDGWTLIVGTLTSS 246
Cdd:TIGR01103 169 VMISLPFKLMLFVLVDGWNLLVGSLVQS 196
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
6-246 1.63e-108

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 312.82  E-value: 1.63e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734   6 RAVAPALLFAGLLFSPQLFAANGDITL-FSSATTDGGQDYNVKIEILILMTLLGLLPVMVLMMTCFTRFIIVLAILRQAL 84
Cdd:COG1338     4 RLLALLLLLALLLLPAPALAQPGLPSLsLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQAL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  85 GLQQSPPNKILTGIALALTLLVMRPVWTTIYDEAIVPFQNDEITMKQAFGKAETPLKNYMLAQTSNKAMAQMMDIAKVTG 164
Cdd:COG1338    84 GTQQTPPNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPP 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734 165 --DPREQDLTVVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIVGT 242
Cdd:COG1338   164 peTPEDVPLRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGS 243


                  ....
gi 1296614734 243 LTSS 246
Cdd:COG1338   244 LVRS 247
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 11-249 2.52e-103

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 299.80  E-value: 2.52e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  11 ALLFAGLLFSPQLFAANGDITLFSSAT-TDGGQDYNVKIEILILMTLLGLLPVMVLMMTCFTRFIIVLAILRQALGLQQS 89
Cdd:PRK05699    5 LLALALLLLALASAAAAAPLPGLNLLPgANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQT 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  90 PPNKILTGIALALTLLVMRPVWTTIYDEAIVPFQNDEITMKQAFGKAETPLKNYMLAQTSNKAMAQMMDIAKV-TGDPRE 168
Cdd:PRK05699   85 PPNQVLIGLALFLTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGEpPKTPED 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734 169 QDLTVVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIVGTLTSSVQ 248
Cdd:PRK05699  165 VPLSVLVPAFVLSELKTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSFG 244


                  .
gi 1296614734 249 G 249
Cdd:PRK05699  245 G 245
FliP pfam00813
FliP family;
61-243 1.89e-95

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 277.76  E-value: 1.89e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  61 PVMVLMMTCFTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYDEAIVPFQNDEITMKQAFGKAETPL 140
Cdd:pfam00813   8 PAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEALERASEPL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734 141 KNYMLAQTSNKAMAQMMDIAKVTGDPREQ-DLTVVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPL 219
Cdd:pfam00813  88 REFMLKQTREKDLALFLDLAGQWPETAEDvPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSMGMMMLPPV 167

                         170       180
                  ....*....|....*....|....
gi 1296614734 220 IVSLPFKLMLFVLCDGWTLIVGTL 243
Cdd:pfam00813 168 TISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 61-246 3.15e-75

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 226.88  E-value: 3.15e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  61 PVMVLMMTCFTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYDEAIVPFQNDEITMKQAFGKAETPL 140
Cdd:TIGR01103   9 PAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEAYQKAEEPL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734 141 KNYMLAQTSNKAMAQMMDIAKVTG--DPREQDLTVVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSP 218
Cdd:TIGR01103  89 REFMLRQTRDKDLALFMRLAKIPKpqTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMAMGMMMLPP 168

                         170       180
                  ....*....|....*....|....*...
gi 1296614734 219 LIVSLPFKLMLFVLCDGWTLIVGTLTSS 246
Cdd:TIGR01103 169 VMISLPFKLMLFVLVDGWNLLVGSLVQS 196
EscR COG4790
Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and ...
 61-246 2.88e-64

Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443819  Cd Length: 216  Bit Score: 199.63  E-value: 2.88e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  61 PVMVLMMTCFTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYD---EAIVPFQNDEiTMKQAFGKAE 137
Cdd:COG4790    21 PFLVVMGTSFLKISVVLSLLRNALGVQQVPPNMVLNGIALILTLFVMAPVGQEIYDrlqAAPVDFSSSA-SVLEAVDAGL 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734 138 TPLKNYMLAQTSNKAMAQMMDIAK------VTGDPREQDLTVVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAM 211
Cdd:COG4790   100 EPLRDFLKKNTDPEERAFFLDAAQrlwpeeYAAKLKPDDLLVLLPAFVLSELTSAFKIGFLLYLPFVVIDLVVSNILLAL 179

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1296614734 212 GMMMLSPLIVSLPFKLMLFVLCDGWTLIVGTLTSS 246
Cdd:COG4790   180 GMMMVSPMTISLPFKLLLFVLVDGWTLLLHGLVLS 214
PRK12430 PRK12430
putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
 13-246 4.01e-64

putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional


Pssm-ID: 237101 [Multi-domain]  Cd Length: 379  Bit Score: 204.35  E-value: 4.01e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  13 LFAGLLFSPQLFAANGDITlfSSATTDGGQDYNVKIEILILMTLLGLLPVMVLMMTCFTRFIIVLAILRQALGLQQSPPN 92
Cdd:PRK12430  143 LVFLLLFCPSAYADIPGLT--SHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPN 220

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  93 KILTGIALALTLLVMRPVWTTIYDEAIVPFQNDEITMKQAFGKAETPLKNYMLAQTSNKAMAQMMDIAKVTGDPREQD-- 170
Cdd:PRK12430  221 QILLGLALFLTFFIMSPTFDKIYKDAYLPFSQEKINMDDAILKGAMPLKKFMLNQTRTPDLELFSKLAHISSYKNKNEip 300

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1296614734 171 LTVVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIVGTLTSS 246
Cdd:PRK12430  301 MRILLPSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHS 376
PRK12797 PRK12797
type III secretion system protein YscR; Provisional
 61-243 8.92e-58

type III secretion system protein YscR; Provisional


Pssm-ID: 237210  Cd Length: 213  Bit Score: 182.76  E-value: 8.92e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  61 PVMVLMMTCFTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYDEAIVPFQNDEIT--MKQAFGKAET 138
Cdd:PRK12797   21 PLIAVMGTSFLKISVVLSLLRNALGVQQVPPNMALYGLALILTLFVMAPVGLAIQDRLQQPPLSLQDPdsVLQLLDAALA 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734 139 PLKNYMLAQTSNKAMAQMMDIAKVT------GDPREQDLTVVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMG 212
Cdd:PRK12797  101 PLRDFLKKHTDERERTFFVRSAQRIwpeeaaDSLKKDDLLILIPAFTLSELTRAFEIGFLLYLPFIVIDLIISNILLAMG 180

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1296614734 213 MMMLSPLIVSLPFKLMLFVLCDGWTLIVGTL 243
Cdd:PRK12797  181 MMMVSPTTISLPFKLLLFVLVDGWSRLLHGL 211
yscR TIGR01102
type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic ...
 61-243 1.25e-49

type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130172  Cd Length: 202  Bit Score: 161.74  E-value: 1.25e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  61 PVMVLMMTCFTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYD---EAIVPFQNDEITMKqAFGKAE 137
Cdd:TIGR01102  12 PFIIVVGTSFLKISVVLGILRNALGVQQVPPNMALYGIALILSMFVMAPVGHQAQDrfhQEPVAYSNIDFLQK-SLDAGL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734 138 TPLKNYMLAQTSNKAMAQMMDIAKVTGDPREQD------LTVVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAM 211
Cdd:TIGR01102  91 APYREFLKKNTDEDEVAFFERSTQKMWPKEMADrlkkdsLLILLPAFTLSELTAAFKIGFLLYLPFIVIDLIVSNILLAL 170

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1296614734 212 GMMMLSPLIVSLPFKLMLFVLCDGWTLIVGTL 243
Cdd:TIGR01102 171 GMMMVSPMTISLPFKLLLFVLIDGWSRLLHGL 202
fliP PRK12783
flagellar biosynthesis protein FliP; Reviewed
 5-246 1.75e-49

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 171720  Cd Length: 255  Bit Score: 163.12  E-value: 1.75e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734   5 LRAVAPALLFAGLLFSPQLFAANGDITLFSSATT----DGGQDYNVKIEILILMTLLGLLPVMVLMMTCFTRFIIVLAIL 80
Cdd:PRK12783    4 ARAILVLALAAGLTASAALAQGAGGVTGVPGLDAllppGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVALSFL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  81 RQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYDEAIVPFQNDEITMKQAFGKAETPLKNYMLAQTSNKAMAQMMDIA 160
Cdd:PRK12783   84 RSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKDLQTFTDLA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734 161 KVTGDPREQ----DLTVVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGW 236
Cdd:PRK12783  164 SRSFPKAEAgekiDLRILIPAFMISELRRGFEIGFLIVLPFLVIDMIVATIVMSMGMMMLPPTVISLPFKVLFFVLIDGW 243

                         250
                  ....*....|
gi 1296614734 237 TLIVGTLTSS 246
Cdd:PRK12783  244 NLLVSGLVRS 253
PRK09617 PRK09617
type III secretion system protein; Reviewed
 61-248 1.28e-48

type III secretion system protein; Reviewed


Pssm-ID: 236593  Cd Length: 243  Bit Score: 160.29  E-value: 1.28e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  61 PVMVLMMTCFTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYDEAIVPFQNDEI-----------TM 129
Cdd:PRK09617   39 PFLVMLLTSFLKIIIVLSLLRNALGVQQTPPSQVLNGIALILSIYIMFPTGVAMYNDAQKGIESNAVprslfsaegaeTV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734 130 KQAFGKAETPLKNYMLAQTSNKAMAQMMDIAKVTGDP------REQDLTVVTPAYLLSELKTAFQIGFMIYIPFLVIDLI 203
Cdd:PRK09617  119 FVAANKSKEPLRSFLIKNTPKPQIASFYKISQKTFPPeirdalTPSDFMIIIPAFIMGQLKNAFEIGVLIYLPFFVIDLV 198

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1296614734 204 VASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIVGTLTSSVQ 248
Cdd:PRK09617  199 TANVLLAMGMMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISFK 243
spaP PRK12796
EscR/YscR/HrcR family type III secretion system export apparatus protein;
68-239 7.27e-42

EscR/YscR/HrcR family type III secretion system export apparatus protein;


Pssm-ID: 237209  Cd Length: 221  Bit Score: 142.43  E-value: 7.27e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734  68 TCFTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYD---EAIVPFQN-DEIT--MKQAFGKAETPLK 141
Cdd:PRK12796   25 TCFIKFSIVFVMVRNALGLQQVPSNMTLNGIALLLSMFVMMPVIQDIYVyfqNEPVDFNNiASVVkfVDEGLGGYRDYLI 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614734 142 NYM---LAQTSNKAMAQMM--DIAKVTgDPREQDLTVVT--PAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMM 214
Cdd:PRK12796  105 KYSdpeLVRFFERAQKKRSygDEAEAN-DHDKDEISLFSllPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMM 183

                         170       180
                  ....*....|....*....|....*
gi 1296614734 215 MLSPLIVSLPFKLMLFVLCDGWTLI 239
Cdd:PRK12796  184 MMSPVTISVPIKLILFVAMDGWTLL 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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