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Conserved domains on  [gi|1330654380|ref|WP_102532917|]
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MULTISPECIES: uroporphyrinogen-III C-methyltransferase [unclassified Vibrio]

Protein Classification

uroporphyrinogen-III C-methyltransferase( domain architecture ID 10000225)

uroporphyrinogen-III C-methyltransferase catalyzes two sequential methylation reactions (on C2 and C7) of uroporphyrinogen-III (UROGEN) to yield precorrin-2

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CysG COG0007
Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; ...
3-245 4.94e-98

Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; Uroporphyrinogen-III methylase (siroheme synthase) is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


:

Pssm-ID: 439778 [Multi-domain]  Cd Length: 245  Bit Score: 294.29  E-value: 4.94e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   3 KGKVYLVGSGPGDPRLLTCRAKQLLSETDVVCYDKLVSAAILALIPESVEMHEVGYRGYQGThidygMHPE-----VIDF 77
Cdd:COG0007     1 KGKVYLVGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALARPDAELIYVGKRGGRHS-----LPQEeinalLVEL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  78 ALAGKRVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTFVSGHKNTHALD-DW 156
Cdd:COG0007    76 ARAGKRVVRLKGGDPFVFGRGGEEAEALAAAGIPFEVVPGITAAIAAPAYAGIPLTHRGVASSVTFVTGHEKDGKLDlDW 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380 157 VTNSNKSGTLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIGPALVIAGEVVS 236
Cdd:COG0007   156 AALARPGGTLVIYMGVKNLPEIAAALIAAGRSPDTPVAVIENGTTPDQRVVTGTLATLAELAAEAGLKSPALIVVGEVVA 235

                  ....*....
gi 1330654380 237 QAKALDWRQ 245
Cdd:COG0007   236 LREKLSWFE 244
 
Name Accession Description Interval E-value
CysG COG0007
Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; ...
3-245 4.94e-98

Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; Uroporphyrinogen-III methylase (siroheme synthase) is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 439778 [Multi-domain]  Cd Length: 245  Bit Score: 294.29  E-value: 4.94e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   3 KGKVYLVGSGPGDPRLLTCRAKQLLSETDVVCYDKLVSAAILALIPESVEMHEVGYRGYQGThidygMHPE-----VIDF 77
Cdd:COG0007     1 KGKVYLVGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALARPDAELIYVGKRGGRHS-----LPQEeinalLVEL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  78 ALAGKRVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTFVSGHKNTHALD-DW 156
Cdd:COG0007    76 ARAGKRVVRLKGGDPFVFGRGGEEAEALAAAGIPFEVVPGITAAIAAPAYAGIPLTHRGVASSVTFVTGHEKDGKLDlDW 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380 157 VTNSNKSGTLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIGPALVIAGEVVS 236
Cdd:COG0007   156 AALARPGGTLVIYMGVKNLPEIAAALIAAGRSPDTPVAVIENGTTPDQRVVTGTLATLAELAAEAGLKSPALIVVGEVVA 235

                  ....*....
gi 1330654380 237 QAKALDWRQ 245
Cdd:COG0007   236 LREKLSWFE 244
SUMT cd11642
Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen ...
9-235 9.52e-87

Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.


Pssm-ID: 381169  Cd Length: 228  Bit Score: 264.68  E-value: 9.52e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   9 VGSGPGDPRLLTCRAKQLLSETDVVCYDKLVSAAILALIPESVEMHEVGYRGYQGThidygMHPEVI-----DFALAGKR 83
Cdd:cd11642     1 VGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALAPPGAELIYVGKRPGRHS-----VPQEEInellvELAREGKR 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  84 VTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTFVSGH-KNTHALDDWVTNSNK 162
Cdd:cd11642    76 VVRLKGGDPFVFGRGGEEIEALREAGIPFEVVPGITSAIAAAAYAGIPLTHRGVASSVTFVTGHeADGKLPDDDAALARP 155
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1330654380 163 SGTLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIGPALVIAGEVV 235
Cdd:cd11642   156 GGTLVIYMGVSNLEEIAERLIAAGLPPDTPVAIVENATTPDQRVVVGTLAELAEKAAEAGIRSPALIVVGEVV 228
PRK06136 PRK06136
uroporphyrinogen-III C-methyltransferase;
4-245 1.50e-83

uroporphyrinogen-III C-methyltransferase;


Pssm-ID: 235711  Cd Length: 249  Bit Score: 257.45  E-value: 1.50e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   4 GKVYLVGSGPGDPRLLTCRAKQLLSETDVVCYDKLVSAAILALIPESVEMHEVGYRGyqgthidyGMH----PEV----I 75
Cdd:PRK06136    3 GKVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVSPEILAYAKPDAELIYVGKRA--------GRHstkqEEInrllV 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  76 DFALAGKRVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTFVSGHKNTHALD- 154
Cdd:PRK06136   75 DYARKGKVVVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAAGKLEp 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380 155 --DWVTNSNKSGTLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIGPALVIAG 232
Cdd:PRK06136  155 evNWSALADGADTLVIYMGVRNLPYIAAQLLAAGRAPDTPVAIIENGTTPEQRVVRGTLGTIAEGAAAEDIQSPAIIVIG 234
                         250
                  ....*....|...
gi 1330654380 233 EVVSQAKALDWRQ 245
Cdd:PRK06136  235 EVVALRAKLAWFE 247
cobA_cysG_Cterm TIGR01469
uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with ...
5-236 1.03e-81

uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273643  Cd Length: 236  Bit Score: 252.15  E-value: 1.03e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   5 KVYLVGSGPGDPRLLTCRAKQLLSETDVVCYDKLVSAAILALIPESVEMHEVGYRGyqgthidyGMHPE--------VID 76
Cdd:TIGR01469   1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYDALVSPEILAYAPPQAELIDVGKRP--------GCHSKkqeeinrlLVE 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  77 FALAGKRVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTFVSGH-KNTHALD- 154
Cdd:TIGR01469  73 LAREGKKVVRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHeADDKALEv 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380 155 DWVTNSNKSGTLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIGPALVIAGEV 234
Cdd:TIGR01469 153 DWEALAKGAGTLVIYMGVRNLPEIAKELIEHGRSPDTPVAVVEWATTPNQRVLIGTLGDLAEKAAEANLKSPALIVIGEV 232

                  ..
gi 1330654380 235 VS 236
Cdd:TIGR01469 233 VA 234
TP_methylase pfam00590
Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of ...
5-215 1.79e-43

Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.


Pssm-ID: 425769 [Multi-domain]  Cd Length: 209  Bit Score: 151.73  E-value: 1.79e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   5 KVYLVGSGPGDPRLLTCRAKQLLSETDVV-CYDKLVSAAILALIPESVEMHEVGYRGYQGTHIDygmhpEVIDF----AL 79
Cdd:pfam00590   1 KLYLVGVGPGDPDLLTLRALRALKEADVVlGDDSRALEILLDLLPEDLYFPMTEDKEPLEEAYE-----EIAEAlaaaLR 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  80 AGKRVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTFVSGhKNTHALDDWVTN 159
Cdd:pfam00590  76 AGKDVARLVSGDPLVYGTGSYLVEALRAAGIDVEVVPGVSSAQAAAARLGIPLTEGGEVLSVLFLPG-LARIELRLLEAL 154
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1330654380 160 SNKSGTLVLYMGARKLAEHTRHMIEKGvPPSLPIAVISSATSANHKCIIGTVESIA 215
Cdd:pfam00590 155 LANGDTVVLLYGPRRLAELAELLLELY-PDTTPVAVVERAGTPDEKVVRGTLGELA 209
 
Name Accession Description Interval E-value
CysG COG0007
Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; ...
3-245 4.94e-98

Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; Uroporphyrinogen-III methylase (siroheme synthase) is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 439778 [Multi-domain]  Cd Length: 245  Bit Score: 294.29  E-value: 4.94e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   3 KGKVYLVGSGPGDPRLLTCRAKQLLSETDVVCYDKLVSAAILALIPESVEMHEVGYRGYQGThidygMHPE-----VIDF 77
Cdd:COG0007     1 KGKVYLVGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALARPDAELIYVGKRGGRHS-----LPQEeinalLVEL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  78 ALAGKRVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTFVSGHKNTHALD-DW 156
Cdd:COG0007    76 ARAGKRVVRLKGGDPFVFGRGGEEAEALAAAGIPFEVVPGITAAIAAPAYAGIPLTHRGVASSVTFVTGHEKDGKLDlDW 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380 157 VTNSNKSGTLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIGPALVIAGEVVS 236
Cdd:COG0007   156 AALARPGGTLVIYMGVKNLPEIAAALIAAGRSPDTPVAVIENGTTPDQRVVTGTLATLAELAAEAGLKSPALIVVGEVVA 235

                  ....*....
gi 1330654380 237 QAKALDWRQ 245
Cdd:COG0007   236 LREKLSWFE 244
SUMT cd11642
Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen ...
9-235 9.52e-87

Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.


Pssm-ID: 381169  Cd Length: 228  Bit Score: 264.68  E-value: 9.52e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   9 VGSGPGDPRLLTCRAKQLLSETDVVCYDKLVSAAILALIPESVEMHEVGYRGYQGThidygMHPEVI-----DFALAGKR 83
Cdd:cd11642     1 VGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALAPPGAELIYVGKRPGRHS-----VPQEEInellvELAREGKR 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  84 VTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTFVSGH-KNTHALDDWVTNSNK 162
Cdd:cd11642    76 VVRLKGGDPFVFGRGGEEIEALREAGIPFEVVPGITSAIAAAAYAGIPLTHRGVASSVTFVTGHeADGKLPDDDAALARP 155
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1330654380 163 SGTLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIGPALVIAGEVV 235
Cdd:cd11642   156 GGTLVIYMGVSNLEEIAERLIAAGLPPDTPVAIVENATTPDQRVVVGTLAELAEKAAEAGIRSPALIVVGEVV 228
PRK06136 PRK06136
uroporphyrinogen-III C-methyltransferase;
4-245 1.50e-83

uroporphyrinogen-III C-methyltransferase;


Pssm-ID: 235711  Cd Length: 249  Bit Score: 257.45  E-value: 1.50e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   4 GKVYLVGSGPGDPRLLTCRAKQLLSETDVVCYDKLVSAAILALIPESVEMHEVGYRGyqgthidyGMH----PEV----I 75
Cdd:PRK06136    3 GKVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVSPEILAYAKPDAELIYVGKRA--------GRHstkqEEInrllV 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  76 DFALAGKRVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTFVSGHKNTHALD- 154
Cdd:PRK06136   75 DYARKGKVVVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAAGKLEp 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380 155 --DWVTNSNKSGTLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIGPALVIAG 232
Cdd:PRK06136  155 evNWSALADGADTLVIYMGVRNLPYIAAQLLAAGRAPDTPVAIIENGTTPEQRVVRGTLGTIAEGAAAEDIQSPAIIVIG 234
                         250
                  ....*....|...
gi 1330654380 233 EVVSQAKALDWRQ 245
Cdd:PRK06136  235 EVVALRAKLAWFE 247
cobA_cysG_Cterm TIGR01469
uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with ...
5-236 1.03e-81

uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273643  Cd Length: 236  Bit Score: 252.15  E-value: 1.03e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   5 KVYLVGSGPGDPRLLTCRAKQLLSETDVVCYDKLVSAAILALIPESVEMHEVGYRGyqgthidyGMHPE--------VID 76
Cdd:TIGR01469   1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYDALVSPEILAYAPPQAELIDVGKRP--------GCHSKkqeeinrlLVE 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  77 FALAGKRVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTFVSGH-KNTHALD- 154
Cdd:TIGR01469  73 LAREGKKVVRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHeADDKALEv 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380 155 DWVTNSNKSGTLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIGPALVIAGEV 234
Cdd:TIGR01469 153 DWEALAKGAGTLVIYMGVRNLPEIAKELIEHGRSPDTPVAVVEWATTPNQRVLIGTLGDLAEKAAEANLKSPALIVIGEV 232

                  ..
gi 1330654380 235 VS 236
Cdd:TIGR01469 233 VA 234
PLN02625 PLN02625
uroporphyrin-III C-methyltransferase
4-244 1.87e-70

uroporphyrin-III C-methyltransferase


Pssm-ID: 178232 [Multi-domain]  Cd Length: 263  Bit Score: 224.13  E-value: 1.87e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   4 GKVYLVGSGPGDPRLLTCRAKQLLSETDVVCYDKLVSAAILALIPESVEMHEVGYRGYQGTHIDYGMHPEVIDFALAGKR 83
Cdd:PLN02625   15 GNVFLVGTGPGDPDLLTLKALRLLQTADVVLYDRLVSPDILDLVPPGAELLYVGKRGGYHSRTQEEIHELLLSFAEAGKT 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  84 VTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTFVSGH---KNTHALDDWVTNS 160
Cdd:PLN02625   95 VVRLKGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRFLTGHdreGGTDPLDVAEAAA 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380 161 NKSGTLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIGPALVIAGEVVSQAKA 240
Cdd:PLN02625  175 DPDTTLVVYMGLGTLPSLAEKLIAAGLPPDTPAAAVERGTTPEQRVVFGTLEDIAEDVAAAGLVSPTVIVVGEVVALSPL 254

                  ....
gi 1330654380 241 LDWR 244
Cdd:PLN02625  255 WPWA 258
PRK07168 PRK07168
uroporphyrin-III C-methyltransferase;
1-344 1.04e-54

uroporphyrin-III C-methyltransferase;


Pssm-ID: 180864 [Multi-domain]  Cd Length: 474  Bit Score: 189.43  E-value: 1.04e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   1 MNkGKVYLVGSGPGDPRLLTCRAKQLLSETDVVCYDKLVSAAILALIPESVEMHEVGyrGYQGTHIdygMHPEVID---- 76
Cdd:PRK07168    1 MN-GYVYLVGAGPGDEGLITKKAIECLKRADIVLYDRLLNPFFLSYTKQTCELMYCG--KMPKNHI---MRQEMINahll 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  77 -FALAGKRVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTFVSGHKNTHALDD 155
Cdd:PRK07168   75 qFAKEGKIVVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAKGPLTDH 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380 156 W-VTNSNKSGTLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIGPALVIAGEV 234
Cdd:PRK07168  155 GkYNSSHNSDTIAYYMGIKNLPTICENLRQAGKKEDTPVAVIEWGTTGKQRVVTGTLSTIVSIVKNENISNPSMTIVGDV 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380 235 VSQAKALDWRQYLPMAGCKVLVCG----NYQYADLLCEMGAEVISVDVARAKstinEKTLMT--LSEKLEIE---FVDLS 305
Cdd:PRK07168  235 VSLRNQIAWKERKPLHGKKVLFTSatnkTSVMKQKLQEAGAEIYQIPTFKKE----EYTLTLeqINEIFNVNrlvFCSAE 310
                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1330654380 306 AFEAWWQALMMYKIDVRLFNKPLSSRDPKVHKVMSDVGL 344
Cdd:PRK07168  311 SVEILMQSCSKYKKDIRSLQAELQHMNVATQEKLMQYGL 349
cysG PRK10637
siroheme synthase CysG;
1-243 5.59e-53

siroheme synthase CysG;


Pssm-ID: 182606 [Multi-domain]  Cd Length: 457  Bit Score: 184.19  E-value: 5.59e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   1 MNKGKVYLVGSGPGDPRLLTCRAKQLLSETDVVCYDKLVSAAILALIPESVEMHEVGYRGyqgthidyGMH--PE----- 73
Cdd:PRK10637  213 DHRGEVVLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSDDIMNLVRRDADRVFVGKRA--------GYHcvPQeeinq 284
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  74 -VIDFALAGKRVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTFVSGHKNTHA 152
Cdd:PRK10637  285 iLLREAQKGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGG 364
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380 153 LDDWVTNSNKSGTLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGT---VESIAGRVDEqgyigPALV 229
Cdd:PRK10637  365 ELDWENLAAEKQTLVFYMGLNQAATIQQKLIEHGMPADMPVALVENGTSVTQRVVSGTltqLGELAQQVNS-----PSLI 439
                         250
                  ....*....|....
gi 1330654380 230 IAGEVVSQAKALDW 243
Cdd:PRK10637  440 IVGRVVGLRDKLNW 453
TP_methylase pfam00590
Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of ...
5-215 1.79e-43

Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.


Pssm-ID: 425769 [Multi-domain]  Cd Length: 209  Bit Score: 151.73  E-value: 1.79e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   5 KVYLVGSGPGDPRLLTCRAKQLLSETDVV-CYDKLVSAAILALIPESVEMHEVGYRGYQGTHIDygmhpEVIDF----AL 79
Cdd:pfam00590   1 KLYLVGVGPGDPDLLTLRALRALKEADVVlGDDSRALEILLDLLPEDLYFPMTEDKEPLEEAYE-----EIAEAlaaaLR 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  80 AGKRVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTFVSGhKNTHALDDWVTN 159
Cdd:pfam00590  76 AGKDVARLVSGDPLVYGTGSYLVEALRAAGIDVEVVPGVSSAQAAAARLGIPLTEGGEVLSVLFLPG-LARIELRLLEAL 154
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1330654380 160 SNKSGTLVLYMGARKLAEHTRHMIEKGvPPSLPIAVISSATSANHKCIIGTVESIA 215
Cdd:pfam00590 155 LANGDTVVLLYGPRRLAELAELLLELY-PDTTPVAVVERAGTPDEKVVRGTLGELA 209
CobM COG2875
Precorrin-4 methylase [Coenzyme transport and metabolism]; Precorrin-4 methylase is part of ...
3-248 5.04e-41

Precorrin-4 methylase [Coenzyme transport and metabolism]; Precorrin-4 methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 442122 [Multi-domain]  Cd Length: 256  Bit Score: 146.74  E-value: 5.04e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   3 KGKVYLVGSGPGDPRLLTCRAKQLLSETDVVCY-DKLVSAAILALIPESVEMH--------EVgyrgyqgthidygmHPE 73
Cdd:COG2875     2 KGTVYFVGAGPGDPDLITVKGRRLLEEADVVLYaGSLVPPELLAYCKPGAEIVdsasmtleEI--------------IAL 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  74 VIDFALAGKRVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSV--------TFVS 145
Cdd:COG2875    68 MKEAAAEGKDVVRLHSGDPSLYGAIAEQMRRLDALGIPYEVVPGVSAFAAAAAALGRELTLPEVSQTViltraegrTPMP 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380 146 GHKNTHALddwvtnSNKSGTLVLYMGARKLAEHTRHMIEkGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIG 225
Cdd:COG2875   148 EGESLASL------AAHGATLAIYLSAHRIDEVVEELLE-GYPPDTPVAVVYRASWPDEKIVRGTLADIAEKVKEAGITR 220
                         250       260
                  ....*....|....*....|...
gi 1330654380 226 PALVIAGEVVSQAKALDWRQYLP 248
Cdd:COG2875   221 TALILVGPALGAEDFARSKLYDP 243
Precorrin-4_C11-MT cd11641
Precorrin-4 C11-methyltransferase (CbiF/CobM); Precorrin-4 C11-methyltransferase participates ...
9-235 3.01e-40

Precorrin-4 C11-methyltransferase (CbiF/CobM); Precorrin-4 C11-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. In the aerobic pathway, CobM catalyzes the methylation of precorrin-4 at C-11 to yield precorrin-5. In the anaerobic pathway, CibF catalyzes the methylation of cobalt-precorrin-4 to cobalt-precorrin-5. Both CibF and CobM, which are homologous, are included in this model. There are about 30 enzymes involved in vitamin B12 synthetic pathway. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared in both pathways and several of these enzymes are pathway-specific.


Pssm-ID: 381168 [Multi-domain]  Cd Length: 225  Bit Score: 143.69  E-value: 3.01e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   9 VGSGPGDPRLLTCRAKQLLSETDVVCY-DKLVSAAILALIPESVEMHEVgyrgyqgthidYGMH-PEVI----DFALAGK 82
Cdd:cd11641     1 VGAGPGDPELITVKGARLLEEADVVIYaGSLVPPELLAYAKPGAEIVDS-----------AGMTlEEIIevmrEAAREGK 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  83 RVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTF--VSGHKNTHALDDwVTNS 160
Cdd:cd11641    70 DVVRLHTGDPSLYGAIREQIDALDKLGIPYEVVPGVSSFFAAAAALGTELTLPEVSQTVILtrLEGRTPVPEGES-LREL 148
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1330654380 161 NKSG-TLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIGPALVIAGEVV 235
Cdd:cd11641   149 AKHGaTLAIFLSAALIEEVVEELLAGGYPPDTPVAVVYKASWPDEKIIRGTLADLAEKVKEAGITRTALILVGPAL 224
cobM_cbiF TIGR01465
precorrin-4 C11-methyltransferase; This model represents precorrin-4 C11-methyltransferase, ...
6-236 2.50e-38

precorrin-4 C11-methyltransferase; This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 200107  Cd Length: 247  Bit Score: 139.38  E-value: 2.50e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   6 VYLVGSGPGDPRLLTCRAKQLLSETDVVCY-DKLVSAAILALIPESVEMHEVGyrgyqGTHIDyGMHPEVIDFALAGKRV 84
Cdd:TIGR01465   1 VYFIGAGPGDPDLITVKGRKLIESADVILYaGSLVPPELLAHCRPGAEVVNSA-----GMSLE-EIVDIMSDAHREGKDV 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  85 TRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSVTF--VSGHKNTHALDDwVTNSNK 162
Cdd:TIGR01465  75 ARLHSGDPSIYGAIAEQMRLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILtrASGRTPMPEGEK-LADLAK 153
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1330654380 163 SG-TLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIGPALVIAGEVVS 236
Cdd:TIGR01465 154 HGaTMAIFLSAHILDKVVKELIEHGYSEDTPVAVVYRATWPDEKIVRGTLADLADLVREEGIYRTTLILVGPALD 228
cbiF PRK15473
cobalt-precorrin-4 methyltransferase;
5-232 1.03e-30

cobalt-precorrin-4 methyltransferase;


Pssm-ID: 185370  Cd Length: 257  Bit Score: 119.09  E-value: 1.03e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   5 KVYLVGSGPGDPRLLTCRAKQLLSETDVVCY-DKLVSAAILALIPESVEMHEVGyrgyqgthidyGMH-PEVIDFAL--- 79
Cdd:PRK15473    9 CVWFVGAGPGDKELITLKGYRLLQQAQVVIYaGSLINTELLDYCPAQAECHDSA-----------ELHlEQIIDLMEagv 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  80 -AGKRVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTASSV--TFVSGHKNTHALDDW 156
Cdd:PRK15473   78 kAGKTVVRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYTVPEVSQSLiiTRMEGRTPVPAREQL 157
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1330654380 157 VTNSNKSGTLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIGPALVIAG 232
Cdd:PRK15473  158 ESFASHQTSMAIFLSVQRIHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADIAEKVRDAGIRKTALILVG 233
TP_methylase cd09815
S-AdoMet-dependent tetrapyrrole methylases; This superfamily uses S-AdoMet ...
9-232 1.69e-25

S-AdoMet-dependent tetrapyrrole methylases; This superfamily uses S-AdoMet (S-adenosyl-L-methionine or SAM) in the methylation of diverse substrates. Most members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis. There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared by both pathways and a few enzymes are pathway-specific. Diphthine synthase and ribosomal RNA small subunit methyltransferase I (RsmI) are two superfamily members that are not involved in cobalamin biosynthesis. Diphthine synthase participates in the posttranslational modification of a specific histidine residue in elongation factor 2 (EF-2) of eukaryotes and archaea to diphthamide. RsmI catalyzes the 2-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. Other superfamily members not involved in cobalamin biosynthesis include the N-terminal tetrapyrrole methylase domain of Bacillus subtilis YabN whose specific function is unknown, and Omphalotus olearius omphalotin methyltransferase which catalyzes the automethylation of its own C-terminus; this C terminus is subsequently released and macrocyclized to give Omphalotin A, a potent nematicide.


Pssm-ID: 381167 [Multi-domain]  Cd Length: 219  Bit Score: 103.63  E-value: 1.69e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   9 VGSGPGDPRLLTCRAKQLLSETDVVCYD----KLVSAAILALIPESVEMHEVGyRGYQGTHIDYGMHPEvidfALAGKRV 84
Cdd:cd09815     1 VGVGPGDPDLLTLRALEILRAADVVVAEdkdsKLLSLVLRAILKDGKRIYDLH-DPNVEEEMAELLLEE----ARQGKDV 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  85 TRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSAGTassVTFVSGHKNTHALDDWVTNSNKSG 164
Cdd:cd09815    76 AFLSPGDPGVAGTGAELVERAEREGVEVKVIPGVSAADAAAAALGIDLGESFL---FVTASDLLENPRLLVLKALAKERR 152
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1330654380 165 TLVLYMGARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIAGRVDEQGYIgPALVIAG 232
Cdd:cd09815   153 HLVLFLDGHRFLKALERLLKELGEDDTPVVLVANAGSEGEVIRTGTVKELRAERTERGKP-LTTILVG 219
TP_methylase cd11724
uncharacterized family of the tetrapyrrole methylase superfamily; Members of this superfamily ...
5-232 1.53e-21

uncharacterized family of the tetrapyrrole methylase superfamily; Members of this superfamily use S-AdoMet (S-adenosyl-L-methionine or SAM) in the methylation of diverse substrates. Most members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis. There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared by both pathways and a few enzymes are pathway-specific. Diphthine synthase and Ribosomal RNA small subunit methyltransferase I (RsmI) are two superfamily members that are not involved in cobalamin biosynthesis. Diphthine synthase participates in the posttranslational modification of a specific histidine residue in elongation factor 2 (EF-2) of eukaryotes and archaea to diphthamide. RsmI catalyzes the 2-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. Other superfamily members not involved in cobalamin biosynthesis include the N-terminal tetrapyrrole methylase domain of Bacillus subtilis YabN whose specific function is unknown, and Omphalotus olearius omphalotin methyltransferase which catalyzes the automethylation of its own C-terminus; this C terminus is subsequently released and macrocyclized to give Omphalotin A, a potent nematicide.


Pssm-ID: 381178 [Multi-domain]  Cd Length: 243  Bit Score: 93.00  E-value: 1.53e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   5 KVYLVGSGPGDPRLLTCRAKQLLSETDVVCYDKLVSAAILALIPEsVEMHEVGYR--GYQGTHIDYGMHPEVIDFAL--- 79
Cdd:cd11724     1 KLYLVGVGPGDPDLITLRALKAIKKADVVFAPPDLRKRFAEYLAG-KEVLDDPHGlfTYYGKKCSPLEEAEKECEELekq 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  80 -------------AGKRVTRLKAGDPCIFGRTT---EEclsLKELGIsyEIIPGI------TAALGAasysgfPLTSAGT 137
Cdd:cd11724    80 raeivqkirealaQGKNVALLDSGDPTIYGPWIwylEE---FADLNP--EVIPGVssfnaaNAALKR------SLTGGGD 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380 138 ASSVTFVSGHKNTHALDDWVTNSNKSGTLVLYMGARKLAEhtrhMIE---KGVPPSLPIAVISSATSANH-KCIIGTVES 213
Cdd:cd11724   149 SRSVILTAPFALKENEDLLEDLAATGDTLVIFMMRLDLDE----LVEklkKHYPPDTPVAIVYHAGYSEKeKVIRGTLDD 224
                         250
                  ....*....|....*....
gi 1330654380 214 IAGRVDEQGYIGPALVIAG 232
Cdd:cd11724   225 ILEKLGGEKEPFLGLIYVG 243
Precorrin_3B_C17_MT cd11646
Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH); Precorrin-3B C(17) ...
6-133 2.57e-19

Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH); Precorrin-3B C(17)-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model includes CobJ of the aerobic pathway and CbiH of the anaerobic pathway, both as stand-alone enzymes and when CobJ or CbiH form part of bifunctional enzymes, such as in Mycobacterium tuberculosis CobIJ where CobJ fuses with a precorrin-2 C(20)-methyltransferase domain, or Bacillus megaterium CbiH60, where CbiH is fused to a nitrite and sulfite reductase-like domain. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyzes the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1). In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.


Pssm-ID: 381173 [Multi-domain]  Cd Length: 238  Bit Score: 86.70  E-value: 2.57e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   6 VYLVGSGPGDPRLLTCRAKQLLSE-TDVVCYDKLVsaailALIPESVEMHEVgyrgyqgthIDYGMHPEV------IDFA 78
Cdd:cd11646     1 LYVVGIGPGSADLMTPRAREALEEaDVIVGYKTYL-----DLIEDLLPGKEV---------ISSGMGEEVerareaLELA 66
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1330654380  79 LAGKRVTRLKAGDPCIFGRT--TEECLSLKELGISYEIIPGITAALGAASYSGFPLT 133
Cdd:cd11646    67 LEGKRVALVSSGDPGIYGMAglVLELLDERWDDIEVEVVPGITAALAAAALLGAPLG 123
CobJ COG1010
Precorrin-3B methylase [Coenzyme transport and metabolism]; Precorrin-3B methylase is part of ...
1-132 7.93e-19

Precorrin-3B methylase [Coenzyme transport and metabolism]; Precorrin-3B methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440634  Cd Length: 250  Bit Score: 85.51  E-value: 7.93e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   1 MNKGKVYLVGSGPGDPRLLTCRAKQLLSE-TDVVCYDKLVsaailALIPESVEMHEVgyrgyqgthIDYGMHPEV----- 74
Cdd:COG1010     1 PMRGKLYVVGLGPGSAELMTPRARAALAEaDVVVGYGTYL-----DLIPPLLPGKEV---------HASGMREEVerare 66
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1330654380  75 -IDFALAGKRVTRLKAGDPCIFGRTT---EECLSLKE-LGISYEIIPGITAALGAASYSGFPL 132
Cdd:COG1010    67 aLELAAEGKTVAVVSSGDPGVYGMAGlvlEVLEEGGAwRDVEVEVVPGITAAQAAAARLGAPL 129
PRK05765 PRK05765
precorrin-3B C17-methyltransferase; Provisional
3-134 5.82e-16

precorrin-3B C17-methyltransferase; Provisional


Pssm-ID: 235597  Cd Length: 246  Bit Score: 77.13  E-value: 5.82e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   3 KGKVYLVGSGPGDPRLLTCRAKQLLSETDVVC-YDKLVsaailALIPESVEMHEVgyrgyqgthIDYGMHPEV------I 75
Cdd:PRK05765    1 MGKLYIVGIGPGSKEQRTIKAQEAIEKSNVIIgYNTYL-----RLISDLLDGKEV---------IGARMKEEIfrantaI 66
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1330654380  76 DFALAGKRVTRLKAGDPCIFGRT--TEECLSLKELGISYEIIPGITAALGAASYSGFPLTS 134
Cdd:PRK05765   67 EKALEGNIVALVSSGDPQVYGMAglVFELISRRKLDVDVEVIPGVTAALAAAARLGSPLSL 127
CobF COG2243
Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of ...
3-186 8.03e-16

Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441844 [Multi-domain]  Cd Length: 229  Bit Score: 76.29  E-value: 8.03e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   3 KGKVYLVGSGPGDPRLLTCRAKQLLSETDVVCY-DKLVSAAILAL------IPEsVEMHEVGY---RGYQGTHIDYgmH- 71
Cdd:COG2243     2 MGKLYGVGVGPGDPELLTLKAVRALREADVIAYpAKGAGKASLAReivapyLPP-ARIVELVFpmtTDYEALVAAW--De 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  72 --PEVIDFALAGKRVTRLKAGDPCIFGRTT---EEclsLKELGISYEIIPGITAALGAASYSGFPLTSAGTasSVTFVSG 146
Cdd:COG2243    79 aaARIAEELEAGRDVAFLTEGDPSLYSTFMyllER---LRERGFEVEVIPGITSFSAAAAALGIPLAEGDE--PLTVLPG 153
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1330654380 147 HKNTHALDDWVTNSNksgTLVLYMGARKLAEHTRHMIEKG 186
Cdd:COG2243   154 TLLEEELERALDDFD---TVVIMKVGRNFPKVREALEEAG 190
Precorrin_2_C20_MT cd11645
Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase ...
9-186 5.54e-14

Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase (also known as S-adenosyl-L-methionine--precorrin-2 methyltransferase) participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. Precorrin-2 C20-methyltransferase catalyzes methylation at the C-20 position of a cyclic tetrapyrrole ring of precorrin-2 using S-adenosylmethionine as a methyl group source to produce precorrin-3A. In the anaerobic pathway, cobalt is inserted into precorrin-2 by CbiK to generate cobalt-precorrin-2, which is the substrate for CbiL, a C20 methyltransferase. In Clostridium difficile, CbiK and CbiL are fused into a bifunctional enzyme. In the aerobic pathway, the precorrin-2 C20-methyltransferase is named CobI. This family includes CbiL and CobI precorrin-2 C20-methyltransferases, both as stand-alone enzymes and when CbiL forms part of a bifunctional enzyme.


Pssm-ID: 381172 [Multi-domain]  Cd Length: 223  Bit Score: 71.00  E-value: 5.54e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   9 VGSGPGDPRLLTCRAKQLLSETDVVCY-------DKLVSAAILALIPESVEMHEVGY-----RGYQGTHIDYGMHpEVID 76
Cdd:cd11645     1 VGVGPGDPELLTLKAVRILKEADVIFVpvskggeGSAALIIAAALLIPDKEIIPLEFpmtkdREELEEAWDEAAE-EIAE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  77 FALAGKRVtrlkA----GDPCI---FGRTTEEclsLKELGISYEIIPGITAALGAASYSGFPLTSAGtaSSVTFVSGHKN 149
Cdd:cd11645    80 ELKEGKDV----AfltlGDPSLystFSYLLER---LRAPGVEVEIIPGITSFSAAAARLGIPLAEGD--ESLAILPATYD 150
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1330654380 150 THALDDWVTNsnkSGTLVLYMGARKLAEHTRHMIEKG 186
Cdd:cd11645   151 EEELEKALEN---FDTVVLMKVGRNLEEIKELLEELG 184
cobJ_cbiH TIGR01466
precorrin-3B C17-methyltransferase; This model represents precorrin-3B C17-methyltransferase, ...
6-133 9.00e-14

precorrin-3B C17-methyltransferase; This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273641 [Multi-domain]  Cd Length: 239  Bit Score: 70.79  E-value: 9.00e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   6 VYLVGSGPGDPRLLTCRAKQLLSETDV-VCYDKLVSaailaLIPESVEMHEVgyrgyqgthIDYGMHPEV------IDFA 78
Cdd:TIGR01466   1 LYVVGIGPGAEELMTPEAKEALAEADViVGYKTYLD-----LIEDLIPGKEV---------VTSGMREEIaraelaIELA 66
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1330654380  79 LAGKRVTRLKAGDPCIFGRT--TEECLSLKELGISYEIIPGITAALGAASYSGFPLT 133
Cdd:TIGR01466  67 AEGRTVALVSSGDPGIYGMAalVFEALEKKGAEVDIEVIPGITAASAAASLLGAPLG 123
cobI_cbiL TIGR01467
precorrin-2 C(20)-methyltransferase; This model represents precorrin-2 C(20)-methyltransferase, ...
4-219 4.86e-11

precorrin-2 C(20)-methyltransferase; This model represents precorrin-2 C(20)-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273642 [Multi-domain]  Cd Length: 230  Bit Score: 62.33  E-value: 4.86e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   4 GKVYLVGSGPGDPRLLTCRAKQLLSETDVVCY------DKLVSAAILA--LIPESVEMHEVGY-----RGYQGTHIDyGM 70
Cdd:TIGR01467   1 GKLYGVGVGPGDPELITVKALEALRSADVIAVpaskkgRESLARKIVEdyLKPNDTRILELVFpmtkdRDELEKAWD-EA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  71 HPEVIDFALAGKRVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTSaGTaSSVTFVSGhknT 150
Cdd:TIGR01467  80 AEAVAAELEEGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVE-GD-ESLAILPA---T 154
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1330654380 151 HALDDWVTNSNKSGTLVLYMGARKLAEHTRHMIEKGVPPSlpIAVISSATSANHKCIIGTVESIAGRVD 219
Cdd:TIGR01467 155 AGEAELEKALAEFDTVVLMKVGRNLPQIKEALAKLGRLDA--AVVVERATMPDEKIVDLVREAIDDALP 221
PRK05787 PRK05787
cobalt-precorrin-7 (C(5))-methyltransferase;
5-219 6.61e-11

cobalt-precorrin-7 (C(5))-methyltransferase;


Pssm-ID: 235609 [Multi-domain]  Cd Length: 210  Bit Score: 61.81  E-value: 6.61e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   5 KVYLVGSGPGDPRLLTCRAKQLLSETDVVcydkLVSAAILALIPEsVEMHEVGYRGyqgthIDYGMHPEVIDFALAGKRV 84
Cdd:PRK05787    1 MIYIVGIGPGDPEYLTLKALEAIRKADVV----VGSKRVLELFPE-LIDGEAFVLT-----AGLRDLLEWLELAAKGKNV 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  85 TRLKAGDPCI--FGRTTEECLSLKElgiSYEIIPGITAALGAASYSGFPLTsagtasSVTFVSGHK---NTHALDDWVtn 159
Cdd:PRK05787   71 VVLSTGDPLFsgLGKLLKVRRAVAE---DVEVIPGISSVQYAAARLGIDMN------DVVFTTSHGrgpNFEELEDLL-- 139
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1330654380 160 SNKSGTLVL---YMGARKLAehtRHMIEKGvPPSLPIAVISSATSANHKCIIGTVESIAGRVD 219
Cdd:PRK05787  140 KNGRKVIMLpdpRFGPKEIA---AELLERG-KLERRIVVGENLSYPDERIHKLTLSEIEPLEF 198
CbiE TIGR02467
precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; This model recognizes ...
8-215 1.75e-10

precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.


Pssm-ID: 274146 [Multi-domain]  Cd Length: 204  Bit Score: 60.41  E-value: 1.75e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   8 LVGSGPGDPRLLTCRAKQLLSETDVVCYDKLVSAAILALIPESVEmhevgyRGYQGTHIDygMHPEVIDFALAGKRVTRL 87
Cdd:TIGR02467   1 VVGIGPGGPELLTPAAIEAIRKADLVVGGERHLELLAELIGEKRE------IILTYKDLD--ELLEFIAATRKEKRVVVL 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  88 KAGDPCIFGRTTEECLSLKelGISYEIIPGITAALGAASYSGFPLTSAgtassvTFVSGHknTHALDDwvtnsnksGTLV 167
Cdd:TIGR02467  73 ASGDPLFYGIGRTLAERLG--KERLEIIPGISSVQYAFARLGLPWQDA------VVISLH--GRELDE--------LLLA 134
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1330654380 168 LYMGARKLA----------EHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVESIA 215
Cdd:TIGR02467 135 LLRGHRKVAvltdprngpaEIARELIELGIGGSYELTVGENLGYEDERITEGTLEEIA 192
PRK05990 PRK05990
precorrin-2 C(20)-methyltransferase; Reviewed
3-132 1.62e-09

precorrin-2 C(20)-methyltransferase; Reviewed


Pssm-ID: 180341  Cd Length: 241  Bit Score: 58.07  E-value: 1.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   3 KGKVYLVGSGPGDPRLLTCRAKQLLSETDVVCY---------------DKLVSAAI-LALI-PESVEMHEVGYRgYQGTH 65
Cdd:PRK05990    2 KGRLIGLGVGPGDPELLTLKALRLLQAAPVVAYfvakgkkgnafgiveAHLSPGQTlLPLVyPVTTEILPPPLC-YETVI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  66 ID-YGMHPEVIDFAL-AGKRVTRLKAGDPCIFGrtteeclslkelgiSY-------------EIIPGITAALGAASYSGF 130
Cdd:PRK05990   81 ADfYDTSAEAVAAHLdAGRDVAVICEGDPFFYG--------------SYmylhdrlapryetEVIPGVCSMLGCWSVLGA 146

                  ..
gi 1330654380 131 PL 132
Cdd:PRK05990  147 PL 148
PRK05576 PRK05576
cobalt-factor II C(20)-methyltransferase;
4-134 3.64e-09

cobalt-factor II C(20)-methyltransferase;


Pssm-ID: 235512 [Multi-domain]  Cd Length: 229  Bit Score: 56.85  E-value: 3.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   4 GKVYLVGSGPGDPRLLTCRAKQLLSETDVV-------CYDKLVSAAILALIPESVemhEVGYRGYQGTHiDYGMHPEVID 76
Cdd:PRK05576    2 GKLYGIGLGPGDPELLTVKAARILEEADVVyapasrkGGGSLALNIVRPYLKEET---EIVELHFPMSK-DEEEKEAVWK 77
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1330654380  77 FALA--------GKRVTRLKAGDPCIFGRTTEECLSLKELGISYEIIPGITAALGAASYSGFPLTS 134
Cdd:PRK05576   78 ENAEeiaaeaeeGKNVAFITLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAM 143
CobL COG2241
Precorrin-6B methylase 1 [Coenzyme transport and metabolism]; Precorrin-6B methylase 1 is part ...
5-217 8.19e-09

Precorrin-6B methylase 1 [Coenzyme transport and metabolism]; Precorrin-6B methylase 1 is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441842 [Multi-domain]  Cd Length: 207  Bit Score: 55.54  E-value: 8.19e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   5 KVYLVGSGPGDPRLLTCRAKQLLSETDVVcydklV-SAAILALIPEsvemhevgyrgYQGTHIDYGMH-PEVIDF---AL 79
Cdd:COG2241     3 WLTVVGIGPGGPDGLTPAAREAIAEADVV-----VgGKRHLELFPD-----------LGAERIVWPSPlSELLEEllaLL 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  80 AGKRVTRLKAGDPCIFG--RTTEECLSLKELgisyEIIPGITAALGAASYSGFPLTSAgtassvTFVSGH-KNTHALDDW 156
Cdd:COG2241    67 RGRRVVVLASGDPLFYGigATLARHLPAEEV----RVIPGISSLQLAAARLGWPWQDA------AVVSLHgRPLERLLPA 136
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1330654380 157 VTNSNKsgTLVL---YMGARKLAehtRHMIEKGVPPSlPIAVISSATSANHKCIIGTVESIAGR 217
Cdd:COG2241   137 LAPGRR--VLVLtddGNTPAAIA---RLLLERGFGDS-RLTVLENLGGPDERITRGTAEELADA 194
cbiH PRK15478
precorrin-3B C(17)-methyltransferase;
6-132 1.61e-07

precorrin-3B C(17)-methyltransferase;


Pssm-ID: 185375 [Multi-domain]  Cd Length: 241  Bit Score: 52.19  E-value: 1.61e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   6 VYLVGSGPGDPRLLTCRAKQLLSETDVVcydklvsaailalipesvemheVGYRGYqgTH-----------IDYGMHPEV 74
Cdd:PRK15478    2 LSVIGIGPGSQAMMTMEAIEALQAAEIV----------------------VGYKTY--THlvkaftgdkqvIKTGMCKEI 57
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1330654380  75 ------IDFALAGKRVTRLKAGDPCIFGRT--TEECLSLKELGISYEIIPGITAALGAASYSGFPL 132
Cdd:PRK15478   58 ercqaaIELAQAGHNVALISSGDAGIYGMAglVLELVSKQKLDVEVRLIPGMTASIAAASLLGAPL 123
Precorrin-6Y-MT cd11644
Precorrin-6Y methyltransferase (also named CbiE); CbiE (precorrin-6Y methyltransferase, also ...
9-217 3.35e-07

Precorrin-6Y methyltransferase (also named CbiE); CbiE (precorrin-6Y methyltransferase, also known as cobalt-precorrin-7 C(5)-methyltransferase, also known as cobalt-precorrin-6Y C(5)-methyltransferase) catalyzes the methylation of C-5 in cobalt-precorrin-7 to form cobalt-precorrin-8. It participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. CbiE functions in the anaerobic pathway, it is a subunit of precorrin-6Y C5,15-methyltransferase, a bifunctional enzyme: cobalt-precorrin-7 C(5)-methyltransferase (CbiE)/cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating) (CbiT), that catalyzes two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. CbiE and CbiT can be found fused (CbiET, also called CobL), or on separate protein chains (CbiE and CbiT). In the aerobic pathway, a single enzyme called CobL catalyzes the methylations at C-5 and C-15, and the decarboxylation of the C-12 acetate side chain of precorrin-6B.


Pssm-ID: 381171 [Multi-domain]  Cd Length: 198  Bit Score: 50.57  E-value: 3.35e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   9 VGSGPGDPRLLTCRAKQLLSETDVVcydkLVSAAILALIPE-SVEMHEVGYRGYQgthidygmhpEVIDF-ALAGKRVTR 86
Cdd:cd11644     1 IGIGPGGPEYLTPEAREAIEEADVV----IGAKRLLELFPDlGAEKIPLPSEDIA----------ELLEEiAEAGKRVVV 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  87 LKAGDPCIFGRTTeeclSLKEL--GISYEIIPGITAALGAASYSGFPLtsagtaSSVTFVSGH-KNTHALDDWVTNSNKS 163
Cdd:cd11644    67 LASGDPGFYGIGK----TLLRRlgGEEVEVIPGISSVQLAAARLGLPW------EDARLVSLHgRDLENLRRALRRGRKV 136
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1330654380 164 GTLVLY-MGARKLAehtRHMIEKGVPPSlPIAVISSATSANHKCIIGTVESIAGR 217
Cdd:cd11644   137 FVLTDGkNTPAEIA---RLLLERGLGDS-RVTVGENLGYPDERITEGTAEELAEE 187
DHP5_DphB cd11647
diphthine methyl ester synthase and diphthine synthase; Eukaryotic diphthine methyl ester ...
7-233 8.78e-05

diphthine methyl ester synthase and diphthine synthase; Eukaryotic diphthine methyl ester synthase (DHP5) and archaeal diphthamide synthase (DphB) participate in the second step of the biosynthetic pathway of diphthamide. The eukaryotic enzyme catalyzes four methylations of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine methyl ester; the archaeal enzyme, catalyzes only 3 methylations, producing diphthine. Diphtheria toxin ADP-ribosylates diphthamide leading to inhibition of protein synthesis in the eukaryotic host cells.


Pssm-ID: 381174  Cd Length: 241  Bit Score: 43.94  E-value: 8.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   7 YLVGSGPGDPRLLTCRAKQLLSETDVVCYD----KLVSAAILAL--------IPESVEMHEVGYRgyqgthidygmhpEV 74
Cdd:cd11647     3 YLIGLGLGDEKDITLEGLEALKKADKVYLEaytsILPGSKLEELekligkkiILLDREDLEEESE-------------EI 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380  75 IDFALAgKRVTRLKAGDPciFGRTT-----EEClslKELGISYEIIPGITAALGAASYSGFPLTSAG-TASSVTFVSGHK 148
Cdd:cd11647    70 LEEAKK-KDVALLVPGDP--LIATThidlrLEA---KKRGIKVKVIHNASILSAAGSTSGLQLYKFGrTVTIPFPEENYK 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380 149 NTHALDdwVTNSNKSG---TLVL---------YM----GARKLAEHTRHMIEKGVPPSLPIAVISSATSANHKCIIGTVE 212
Cdd:cd11647   144 PESPYD--VIKENLKRglhTLLLldikveegrFMtineAIEILLEIEEKRKEGVITEDTLVVGLARLGSDDQKIVAGTLK 221
                         250       260
                  ....*....|....*....|...
gi 1330654380 213 SIAgrvdEQGYIGP--ALVIAGE 233
Cdd:cd11647   222 ELL----KEDFGPPphSLIIPGK 240
PRK05948 PRK05948
precorrin-2 C(20)-methyltransferase;
1-133 3.45e-03

precorrin-2 C(20)-methyltransferase;


Pssm-ID: 180320  Cd Length: 238  Bit Score: 38.86  E-value: 3.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330654380   1 MNKGKVYLVGSGPGDPRLLTCRAKQLLSETDVVCY-----------DKLVSAAI------LALIPESVEMHEVGYRGYQG 63
Cdd:PRK05948    1 MTLGTLYGISVGPGDPELITLKGLRLLQSAPVVAFpaglagqpglaEQIIAPWLspqqikLPLYFPYVQDEEQLEQAWQA 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1330654380  64 ThidygmHPEVIDFALAGKRVTRLKAGDPCIFGRTTEECLSLKEL--GISYEIIPGITAALGAASYSGFPLT 133
Cdd:PRK05948   81 A------ADQVWHYLEQGEDVAFACEGDVSFYSTFTYLAQTLQELypQVAIQTIPGVCSPLAAAAALGIPLT 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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