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Conserved domains on  [gi|1337348123|ref|WP_103242226|]
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MULTISPECIES: helix-turn-helix domain-containing protein [Lachnospiraceae]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 10576928)

helix-turn-helix domain-containing protein may function as a transcriptional regulator or a transposase

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_16 pfam12645
Helix-turn-helix domain; This domain appears to be a helix-turn-helix domain suggesting that ...
 9-64 1.18e-09

Helix-turn-helix domain; This domain appears to be a helix-turn-helix domain suggesting that this might be a transcriptional regulatory protein. Some members of this family are annotated as conjugative transposon domains.


:

Pssm-ID: 463654  Cd Length: 65  Bit Score: 48.76  E-value: 1.18e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1337348123  9 YETIVRATSGEPEAVDEVLRHYSKRIRIAAI---------ENGHIDRDTEDSIKQQLVAALFKFR 64
Cdd:pfam12645  1 YEVIEKAVNGDEEAIEEILKHYEPYIRKLSLrtlydedgnVNGYVDEDLKQELEIKLIEAILKFD 65
 
Name Accession Description Interval E-value
HTH_16 pfam12645
Helix-turn-helix domain; This domain appears to be a helix-turn-helix domain suggesting that ...
 9-64 1.18e-09

Helix-turn-helix domain; This domain appears to be a helix-turn-helix domain suggesting that this might be a transcriptional regulatory protein. Some members of this family are annotated as conjugative transposon domains.


Pssm-ID: 463654  Cd Length: 65  Bit Score: 48.76  E-value: 1.18e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1337348123  9 YETIVRATSGEPEAVDEVLRHYSKRIRIAAI---------ENGHIDRDTEDSIKQQLVAALFKFR 64
Cdd:pfam12645  1 YEVIEKAVNGDEEAIEEILKHYEPYIRKLSLrtlydedgnVNGYVDEDLKQELEIKLIEAILKFD 65
 
Name Accession Description Interval E-value
HTH_16 pfam12645
Helix-turn-helix domain; This domain appears to be a helix-turn-helix domain suggesting that ...
 9-64 1.18e-09

Helix-turn-helix domain; This domain appears to be a helix-turn-helix domain suggesting that this might be a transcriptional regulatory protein. Some members of this family are annotated as conjugative transposon domains.


Pssm-ID: 463654  Cd Length: 65  Bit Score: 48.76  E-value: 1.18e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1337348123  9 YETIVRATSGEPEAVDEVLRHYSKRIRIAAI---------ENGHIDRDTEDSIKQQLVAALFKFR 64
Cdd:pfam12645  1 YEVIEKAVNGDEEAIEEILKHYEPYIRKLSLrtlydedgnVNGYVDEDLKQELEIKLIEAILKFD 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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