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Conserved domains on  [gi|1356007953|ref|WP_105190539|]
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flagellar hook-associated protein FlgK [Pseudoalteromonas sp. T1lg48]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgK super family cl35521
flagellar hook-associated protein FlgK; Validated
 2-662 7.78e-111

flagellar hook-associated protein FlgK; Validated


The actual alignment was detected with superfamily member PRK06945:

Pssm-ID: 235895 [Multi-domain]  Cd Length: 651  Bit Score: 348.16  E-value: 7.78e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   2 SFNLLNIASSGIRASTELLNTASKNIANVNTAGYVRERTEHGGTIDNQIGRG---------ETYRLLNEFAQQQLNRDTS 72
Cdd:PRK06945    1 SSSLLNIGLSGLNAAQWGLTTTGHNISNAATPGYSRQRVVQAEAGGQYTGSGylgqgvnvvTVKRQYSQYLSAQLNNAQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  73 NRAFFERFTADAGRVDTMFSEESTSLSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQAVNE 152
Cdd:PRK06945   81 ASSSLSTYYSQISQLNNYLADPTAGLSPAITSFFTGLQNVANNPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVNT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 153 QLYGLSEEANGLIEKISELNSKITAVHGSDTQaSASNLYNERDLAIKELSALVNIETTDGPHGEKLVFMSTGESLVMENG 232
Cdd:PRK06945  161 QLTSSVTQINSYTKQIAQLNDQIAKAESSQGQ-PPNDLLDQRDQLVSELSKLVGVTVVQQDDGGYNVFVGNGQPLVVGNQ 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 233 TFNMFSLQGDPDPSKMELKLDVQDGKAIAIDiDPNTLKGEIGGVLAYRDEILIPAQTQLGQMALSFADAFNQQNALGMAG 312
Cdd:PRK06945  240 SYQLTTVPSPSDPSRLTVAGYKPPGTTQELP-DSSLTGGTLGGLLAFRSQTLDPAQNQLGRLAASLAAQFNAQNALGIDL 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 313 NGELGGDLFTL--PSVAGLAHGNSNAELSATLApgQGTNIPASDFRLEFTGpgANDVLVQPIDASGNAIGTASAATIAAN 390
Cdd:PRK06945  319 NGNLGGDLFSVagPTVYANANNTGSATLTASIT--NASALTTSDYTLSYDG--TNYTLTRLSDGSVVGTATSLPTPPPTT 394

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 391 GDvdfggndsfGLQINVSTLGAIGDKVDIKLNSAAASQLTLATDQGEDLALASPIRTETNINNNSEASISAGSVTSigtG 470
Cdd:PRK06945  395 ID---------GLSLSLSGTMNAGDSFLVQPTRNAANGFSVATTDGSAIAAASPVRASAGSTNTGTGAISQGSVSS---G 462

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 471 FlsgpppSLANGELTLTKVAEPDQYTLSDSANSVTFTLSDPKDSILAQAGAP----------FDAYGFDFDIKGTPEVGD 540
Cdd:PRK06945  463 Y------PLPSGTTTLTYDAATGTLSGFPAGTTVTVAGTPPTSVTITPATTPvpytsgagisLVFNGVSVTLSGTPADGD 536

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 541 SFSVEFNDQGFDDNRNGQALADLQNQNLVrqsvnaqndGSNGKTFNQAYAGTVSDIGMVTAQAQTSFGAFSALEAQSNAW 620
Cdd:PRK06945  537 TFTIGPNTGGTNDGRNALALAKLQNAKTL---------DGGTATYTGAYAQLVNQVGNKASQLKVSSAAQTALLGQITAA 607

                         650       660       670       680
                  ....*....|....*....|....*....|....*....|..
gi 1356007953 621 YESLSGVNLDEEAANLLRFQQSYSASARILQTAQTVFDTLLS 662
Cdd:PRK06945  608 QQSVSGVNLDEEAANLLRYQQAYQANAKVIQTASTLFDTLLG 649
 
Name Accession Description Interval E-value
flgK PRK06945
flagellar hook-associated protein FlgK; Validated
 2-662 7.78e-111

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235895 [Multi-domain]  Cd Length: 651  Bit Score: 348.16  E-value: 7.78e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   2 SFNLLNIASSGIRASTELLNTASKNIANVNTAGYVRERTEHGGTIDNQIGRG---------ETYRLLNEFAQQQLNRDTS 72
Cdd:PRK06945    1 SSSLLNIGLSGLNAAQWGLTTTGHNISNAATPGYSRQRVVQAEAGGQYTGSGylgqgvnvvTVKRQYSQYLSAQLNNAQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  73 NRAFFERFTADAGRVDTMFSEESTSLSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQAVNE 152
Cdd:PRK06945   81 ASSSLSTYYSQISQLNNYLADPTAGLSPAITSFFTGLQNVANNPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVNT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 153 QLYGLSEEANGLIEKISELNSKITAVHGSDTQaSASNLYNERDLAIKELSALVNIETTDGPHGEKLVFMSTGESLVMENG 232
Cdd:PRK06945  161 QLTSSVTQINSYTKQIAQLNDQIAKAESSQGQ-PPNDLLDQRDQLVSELSKLVGVTVVQQDDGGYNVFVGNGQPLVVGNQ 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 233 TFNMFSLQGDPDPSKMELKLDVQDGKAIAIDiDPNTLKGEIGGVLAYRDEILIPAQTQLGQMALSFADAFNQQNALGMAG 312
Cdd:PRK06945  240 SYQLTTVPSPSDPSRLTVAGYKPPGTTQELP-DSSLTGGTLGGLLAFRSQTLDPAQNQLGRLAASLAAQFNAQNALGIDL 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 313 NGELGGDLFTL--PSVAGLAHGNSNAELSATLApgQGTNIPASDFRLEFTGpgANDVLVQPIDASGNAIGTASAATIAAN 390
Cdd:PRK06945  319 NGNLGGDLFSVagPTVYANANNTGSATLTASIT--NASALTTSDYTLSYDG--TNYTLTRLSDGSVVGTATSLPTPPPTT 394

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 391 GDvdfggndsfGLQINVSTLGAIGDKVDIKLNSAAASQLTLATDQGEDLALASPIRTETNINNNSEASISAGSVTSigtG 470
Cdd:PRK06945  395 ID---------GLSLSLSGTMNAGDSFLVQPTRNAANGFSVATTDGSAIAAASPVRASAGSTNTGTGAISQGSVSS---G 462

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 471 FlsgpppSLANGELTLTKVAEPDQYTLSDSANSVTFTLSDPKDSILAQAGAP----------FDAYGFDFDIKGTPEVGD 540
Cdd:PRK06945  463 Y------PLPSGTTTLTYDAATGTLSGFPAGTTVTVAGTPPTSVTITPATTPvpytsgagisLVFNGVSVTLSGTPADGD 536

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 541 SFSVEFNDQGFDDNRNGQALADLQNQNLVrqsvnaqndGSNGKTFNQAYAGTVSDIGMVTAQAQTSFGAFSALEAQSNAW 620
Cdd:PRK06945  537 TFTIGPNTGGTNDGRNALALAKLQNAKTL---------DGGTATYTGAYAQLVNQVGNKASQLKVSSAAQTALLGQITAA 607

                         650       660       670       680
                  ....*....|....*....|....*....|....*....|..
gi 1356007953 621 YESLSGVNLDEEAANLLRFQQSYSASARILQTAQTVFDTLLS 662
Cdd:PRK06945  608 QQSVSGVNLDEEAANLLRYQQAYQANAKVIQTASTLFDTLLG 649
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
1-665 6.68e-78

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 256.34  E-value: 6.68e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   1 MSFNLLNIASSGIRASTELLNTASKNIANVNTAGYVRERTEHG-----GTIDNQIGRG----ETYRLLNEFAQQQLNRDT 71
Cdd:COG1256     1 SLFSALNIALSGLNAAQRALDVTSHNIANANTPGYSRQRVVLSaagptATGAGQVGTGvrvtGIRRIRDEFLDAQLRSAN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  72 SNRAFFERFTADAGRVDTMFSE-ESTSLSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQAV 150
Cdd:COG1256    81 SDLGYAEARADALSQLEALLGEpSDTGLSTALDDFFNALQELASNPESSAARQAVLEAAQALADRFNSLSSQLQDLRADA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 151 NEQLYGLSEEANGLIEKISELNSKITAVHGSDtqASASNLYNERDLAIKELSALVNIETTDGPHGEKLVFMSTGESLVmE 230
Cdd:COG1256   161 DSQIASTVDEINSLLSQIADLNKQIVKAEAGG--QDANDLLDQRDQLLDELSELVGVTVVEQDDGTVNVSTGNGQTLV-D 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 231 NGTFNMFSLQGDPDPSKMELKLDVQDGKAIAIDIDPNTlKGEIGGVLAYRDEILIPAQTQLGQMALSFADAFNQQNALGM 310
Cdd:COG1256   238 GDTASELSFTPSAGDPGGLSTVTLDDSGVPSDATSSIT-GGSLGGLLELRDETLPEYQAQLDELARGLADAFNAVHAQGY 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 311 AGNGELGGDLFTlpsvaglahgnsnaelsatlapgqgtnipasdfrlefTGPGANDVLVQPIDASGnaigtasAATIAAN 390
Cdd:COG1256   317 DLNGNPGGDLFD-------------------------------------IDPSITGGTLTPFDTVG-------AGNISVN 352

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 391 GDVDfggndsfglqinvstlgaigdkvdiklnsaaasqltlatdqgedlalaspirtetninnNSEASISAGSVTSIGTG 470
Cdd:COG1256   353 PAVI-----------------------------------------------------------GDPSLLAAANSDGGGAG 373

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 471 flsgpppslangeltltkvaepdqytlsdsansvtftlsdpkdsilaqagapfdaygfdfdikgtpevgdsfsvefndqg 550
Cdd:COG1256       --------------------------------------------------------------------------------

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 551 fdDNRNGQALADLQNQNLVrqsvnaqNDGSNGKTFNQAYAGTVSDIGMVTAQAQTSFGAFSALEAQSNAWYESLSGVNLD 630
Cdd:COG1256   374 --DNTNALALAALQDAKLV-------FDSGGSGTLSDYYASLVSDLGVDAQQAKTEAEAQEALLDQLENQRQSVSGVNLD 444

                         650       660       670
                  ....*....|....*....|....*....|....*
gi 1356007953 631 EEAANLLRFQQSYSASARILQTAQTVFDTLLSSAR 665
Cdd:COG1256   445 EEMANLIKFQQAYQANARVITTADEMLDTLLNIVG 479
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 4-309 2.32e-46

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 167.14  E-value: 2.32e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   4 NLLNIASSGIRASTELLNTASKNIANVNTAGYVRER-----TEHGGTIDNQIGRG----ETYRLLNEFAQQQLNRDTSNR 74
Cdd:TIGR02492   1 SLLNIAKSGLSASQIALSVTSNNIANANTPGYSRQRavltaVPAGGQGGKQIGTGvkvtSIRRIQDQFLDNQYRRANSSA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  75 AFFERFTADAGRVDTMFSEESTS-LSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQAVNEQ 153
Cdd:TIGR02492  81 GYADSRASGLSKIEQIFNDLDGSgLGTYLNNFFNALQELAKNPDSEALRQAVLESAQALANSFNQTSNELQDLRKGINAE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 154 LYGLSEEANGLIEKISELNSKITAVHGSDTqaSASNLYNERDLAIKELSALVNIETTDGPHGEKLVFMSTGESLVM--EN 231
Cdd:TIGR02492 161 IKSAVTEINSLLKQIASLNKEIKQVEASGQ--DANDLLDQRDLLLKELSQLIGISVSENENGTVNVYTGSGQVLVDgaTV 238

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1356007953 232 GTFNMFSLQGDPDPSKMELKLDVQDGKAIAIDIDPNTLKGEIGGVLAYRDEILIPAQTQLGQMALSFADAFNQQNALG 309
Cdd:TIGR02492 239 TGSSTSPLTADTTGGKVGGDGVYLPSGSSKVTISSDLQGGKLGGLLDLRDGVLPDLQSQLDQLAKTLADEFNEVHQSG 316
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 625-662 1.01e-04

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 41.10  E-value: 1.01e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1356007953 625 SGVNLDEEAANLLRFQQSYSASARILQTAQTVFDTLLS 662
Cdd:pfam06429  36 SNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQ 73
 
Name Accession Description Interval E-value
flgK PRK06945
flagellar hook-associated protein FlgK; Validated
 2-662 7.78e-111

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235895 [Multi-domain]  Cd Length: 651  Bit Score: 348.16  E-value: 7.78e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   2 SFNLLNIASSGIRASTELLNTASKNIANVNTAGYVRERTEHGGTIDNQIGRG---------ETYRLLNEFAQQQLNRDTS 72
Cdd:PRK06945    1 SSSLLNIGLSGLNAAQWGLTTTGHNISNAATPGYSRQRVVQAEAGGQYTGSGylgqgvnvvTVKRQYSQYLSAQLNNAQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  73 NRAFFERFTADAGRVDTMFSEESTSLSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQAVNE 152
Cdd:PRK06945   81 ASSSLSTYYSQISQLNNYLADPTAGLSPAITSFFTGLQNVANNPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVNT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 153 QLYGLSEEANGLIEKISELNSKITAVHGSDTQaSASNLYNERDLAIKELSALVNIETTDGPHGEKLVFMSTGESLVMENG 232
Cdd:PRK06945  161 QLTSSVTQINSYTKQIAQLNDQIAKAESSQGQ-PPNDLLDQRDQLVSELSKLVGVTVVQQDDGGYNVFVGNGQPLVVGNQ 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 233 TFNMFSLQGDPDPSKMELKLDVQDGKAIAIDiDPNTLKGEIGGVLAYRDEILIPAQTQLGQMALSFADAFNQQNALGMAG 312
Cdd:PRK06945  240 SYQLTTVPSPSDPSRLTVAGYKPPGTTQELP-DSSLTGGTLGGLLAFRSQTLDPAQNQLGRLAASLAAQFNAQNALGIDL 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 313 NGELGGDLFTL--PSVAGLAHGNSNAELSATLApgQGTNIPASDFRLEFTGpgANDVLVQPIDASGNAIGTASAATIAAN 390
Cdd:PRK06945  319 NGNLGGDLFSVagPTVYANANNTGSATLTASIT--NASALTTSDYTLSYDG--TNYTLTRLSDGSVVGTATSLPTPPPTT 394

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 391 GDvdfggndsfGLQINVSTLGAIGDKVDIKLNSAAASQLTLATDQGEDLALASPIRTETNINNNSEASISAGSVTSigtG 470
Cdd:PRK06945  395 ID---------GLSLSLSGTMNAGDSFLVQPTRNAANGFSVATTDGSAIAAASPVRASAGSTNTGTGAISQGSVSS---G 462

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 471 FlsgpppSLANGELTLTKVAEPDQYTLSDSANSVTFTLSDPKDSILAQAGAP----------FDAYGFDFDIKGTPEVGD 540
Cdd:PRK06945  463 Y------PLPSGTTTLTYDAATGTLSGFPAGTTVTVAGTPPTSVTITPATTPvpytsgagisLVFNGVSVTLSGTPADGD 536

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 541 SFSVEFNDQGFDDNRNGQALADLQNQNLVrqsvnaqndGSNGKTFNQAYAGTVSDIGMVTAQAQTSFGAFSALEAQSNAW 620
Cdd:PRK06945  537 TFTIGPNTGGTNDGRNALALAKLQNAKTL---------DGGTATYTGAYAQLVNQVGNKASQLKVSSAAQTALLGQITAA 607

                         650       660       670       680
                  ....*....|....*....|....*....|....*....|..
gi 1356007953 621 YESLSGVNLDEEAANLLRFQQSYSASARILQTAQTVFDTLLS 662
Cdd:PRK06945  608 QQSVSGVNLDEEAANLLRYQQAYQANAKVIQTASTLFDTLLG 649
flgK PRK05683
flagellar hook-associated protein FlgK; Validated
 5-663 9.42e-102

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235558 [Multi-domain]  Cd Length: 676  Bit Score: 325.15  E-value: 9.42e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   5 LLNIASSGIRASTELLNTASKNIANVNTAGYVRERTEHGGTIDNQIGRG---------ETYRLLNEFAQQQLNRDTSNRA 75
Cdd:PRK05683    3 LISIGLSGLGASQTALAVTGNNIANVDTAGYSRQQTVQTTKASQQSGAGyigtgttlaDVRRIYNSFLDTQLRTATSLNS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  76 FFERFTADAGRVDTMFSEESTSLSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQAVNEQLY 155
Cdd:PRK05683   83 DASAYLGQISQLDKLLSDSTTGISPALQRFFTALQTAAANPTDTAARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 156 GLSEEANGLIEKISELNSKITAVHGSDTQASasNLYNERDLAIKELSALVNIETTDgPHGEKLVFMSTGESLVMENGTFN 235
Cdd:PRK05683  163 AMTDQVNNLTTSIASYNKQIAQASASGATPN--DLLDARDEAVRQLNELVGVTVVE-RDGNYDVYIGSGQPLVVGNTANT 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 236 MFSLQGDPDPSKMELKLDVQDGKaiaIDIDPNTLKGEIGGVLAYRDEILIPAQTQLGQMALSFADAFNQQNALGMAGNGE 315
Cdd:PRK05683  240 LSVVPGPSDPSRYNVQLNRGSST---QDVTSVVSGGEIGGLLRYRSDVLDPAMNELGRLALVVADQINSQLGQGIDLNGN 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 316 LGGDLF---------TLPSVAGLahGNSNAELSATLAPGQGTNIPASDFRLEFTGPGANDVLVQPidaSGNAIGTASAAT 386
Cdd:PRK05683  317 FGSSLFgdinsadaiSQRSLAKN--GNSAGSGNLNVTIKDTSKLTTSDYEVTFTSATNYTVRRLS---DGTDMGSFDLSD 391

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 387 IAANGdvdfggNDSFGLQINVSTLGAiGDKVDIKLNSAAASQLTLATDQGEDLALASPIRTETNINNNSEASISAGSVTS 466
Cdd:PRK05683  392 NPAPV------IDGFSLSLNGGTLAA-GDSFKVTPTRNAASDIETVLTDPKKLAFAAPLTAEAGSGNSGTGSITQPTLTS 464

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 467 ------------IGTGFLSGPPPSLANGELTltkvAEPDQYTLSDS--------------ANSVTFTLSDPKDSILAQAG 520
Cdd:PRK05683  465 kldiydpaqtadLQNAIKNSTPVKLVFGADS----SGPQSYTLVDAkgnaigsgtivpgqSNTLTLAVPMPDASGNPIND 540

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 521 ApfdAYGFDFDIKGTPEVGDSFSVEFNDQGFDDNRNGQALADLQNQNLVrqsvnAQNDGSNGKTFNQAYAGTVSDIGMVT 600
Cdd:PRK05683  541 A---TFTFEMTISGSPQAGDSFTVSFNGAGSSDNRNALALLGLQTKSTV-----GVGSGGKGTSLTDAYGKLVERVGTLA 612

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1356007953 601 AQAQTSFGAFSALEAQSNAWYESLSGVNLDEEAANLLRFQQSYSASARILQTAQTVFDTLLSS 663
Cdd:PRK05683  613 SQARADATATAAVLKQAKDSRDSLSGVSLDEEAANLIKFQQYYTASSQIIKAAQETFSTLINA 675
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
1-665 6.68e-78

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 256.34  E-value: 6.68e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   1 MSFNLLNIASSGIRASTELLNTASKNIANVNTAGYVRERTEHG-----GTIDNQIGRG----ETYRLLNEFAQQQLNRDT 71
Cdd:COG1256     1 SLFSALNIALSGLNAAQRALDVTSHNIANANTPGYSRQRVVLSaagptATGAGQVGTGvrvtGIRRIRDEFLDAQLRSAN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  72 SNRAFFERFTADAGRVDTMFSE-ESTSLSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQAV 150
Cdd:COG1256    81 SDLGYAEARADALSQLEALLGEpSDTGLSTALDDFFNALQELASNPESSAARQAVLEAAQALADRFNSLSSQLQDLRADA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 151 NEQLYGLSEEANGLIEKISELNSKITAVHGSDtqASASNLYNERDLAIKELSALVNIETTDGPHGEKLVFMSTGESLVmE 230
Cdd:COG1256   161 DSQIASTVDEINSLLSQIADLNKQIVKAEAGG--QDANDLLDQRDQLLDELSELVGVTVVEQDDGTVNVSTGNGQTLV-D 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 231 NGTFNMFSLQGDPDPSKMELKLDVQDGKAIAIDIDPNTlKGEIGGVLAYRDEILIPAQTQLGQMALSFADAFNQQNALGM 310
Cdd:COG1256   238 GDTASELSFTPSAGDPGGLSTVTLDDSGVPSDATSSIT-GGSLGGLLELRDETLPEYQAQLDELARGLADAFNAVHAQGY 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 311 AGNGELGGDLFTlpsvaglahgnsnaelsatlapgqgtnipasdfrlefTGPGANDVLVQPIDASGnaigtasAATIAAN 390
Cdd:COG1256   317 DLNGNPGGDLFD-------------------------------------IDPSITGGTLTPFDTVG-------AGNISVN 352

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 391 GDVDfggndsfglqinvstlgaigdkvdiklnsaaasqltlatdqgedlalaspirtetninnNSEASISAGSVTSIGTG 470
Cdd:COG1256   353 PAVI-----------------------------------------------------------GDPSLLAAANSDGGGAG 373

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 471 flsgpppslangeltltkvaepdqytlsdsansvtftlsdpkdsilaqagapfdaygfdfdikgtpevgdsfsvefndqg 550
Cdd:COG1256       --------------------------------------------------------------------------------

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 551 fdDNRNGQALADLQNQNLVrqsvnaqNDGSNGKTFNQAYAGTVSDIGMVTAQAQTSFGAFSALEAQSNAWYESLSGVNLD 630
Cdd:COG1256   374 --DNTNALALAALQDAKLV-------FDSGGSGTLSDYYASLVSDLGVDAQQAKTEAEAQEALLDQLENQRQSVSGVNLD 444

                         650       660       670
                  ....*....|....*....|....*....|....*
gi 1356007953 631 EEAANLLRFQQSYSASARILQTAQTVFDTLLSSAR 665
Cdd:COG1256   445 EEMANLIKFQQAYQANARVITTADEMLDTLLNIVG 479
flgK PRK08147
flagellar hook-associated protein FlgK; Validated
 4-662 2.44e-74

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236165 [Multi-domain]  Cd Length: 547  Bit Score: 248.82  E-value: 2.44e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   4 NLLNIASSGIRASTELLNTASKNIANVNTAGYVRERT---EHGGTIDNQ--IGRGET----YRLLNEFAQQQLNRDTSNR 74
Cdd:PRK08147    3 SLINTAMSGLNAAQAALNTVSNNISNYNVAGYTRQTTilaQAGSTLTAGgwIGNGVYvsgvQREYDAFITNQLRAAQTQS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  75 AFFERFTADAGRVDTMFSEESTSLSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQAVNEQL 154
Cdd:PRK08147   83 SGLTTRYEQMSKIDNLLSDSTNSLSTTMQDFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAI 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 155 YGLSEEANGLIEKISELNSKITAVHGSDTQASASNLYNERDLAIKELSALVNIETTDGPHGEKLVFMSTGESLVMENGTF 234
Cdd:PRK08147  163 GSSVDQINNYAKQIASLNDQITRLTGVGAGASPNDLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTAY 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 235 NMFSLQGDPDPSKMELKLDvqDGKAIAIDIDPNTL-KGEIGGVLAYRDEILIPAQTQLGQMALSFADAFNQQNALGMAGN 313
Cdd:PRK08147  243 QLAAVPSSADPTRTTVAYV--DGTAGNIEIPEKLLtTGSLGGLLTFRSQDLDQTRNQLGQLALAFADAFNTQHKAGFDAN 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 314 GELGGDLFTL--PSVAGLAHGNSNAELSATLApgQGTNIPASDFRLEFTgpGANDVLVQpidASGNAIGTASAATIAANG 391
Cdd:PRK08147  321 GDAGEDFFSIgkPAVLSNSKNTGTASLTAEYT--DASAVKATDYKISFD--GTNWQVTR---LSDNTTFTVTPDANGKTL 393

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 392 DVDfggndsfGLQINVSTLGAIGDKVDIKlnsaaasqltlatdqgedlalaspirtetninnnseasisagsvtsigtgf 471
Cdd:PRK08147  394 EFD-------GLKVTVTGTPAANDSFTLK--------------------------------------------------- 415

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 472 lsgpppslangeltltkvaepdqyTLSDSANSVTFTLSDPkdSILAQAGAPfdaygfdfdikgtpevgdsfsvefnDQGF 551
Cdd:PRK08147  416 ------------------------PVSDAIVNMDVLITDE--SKIAMASEA-------------------------DGGD 444

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 552 DDNRNGQALADLQNQNLVrqsvnaqnDGSngKTFNQAYAGTVSDIGMVTAQAQTSFGAFSALEAQSNAWYESLSGVNLDE 631
Cdd:PRK08147  445 SDNRNGQALLDLQNKKLV--------GGK--KSFNDAYASLVSDVGNQTATLKTSSTTQANVVTQLTNQQQSVSGVNLDE 514

                         650       660       670
                  ....*....|....*....|....*....|.
gi 1356007953 632 EAANLLRFQQSYSASARILQTAQTVFDTLLS 662
Cdd:PRK08147  515 EYGNLQRFQQYYLANAQVLQTASTLFDALLN 545
flgK PRK12714
flagellar hook-associated protein FlgK; Provisional
 4-665 7.26e-59

flagellar hook-associated protein FlgK; Provisional


Pssm-ID: 183697 [Multi-domain]  Cd Length: 624  Bit Score: 209.04  E-value: 7.26e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   4 NLLNIASSGIRASTELLNTASKNIANVNTAGYVRERTEHGGTIDNQIGRG---------ETYRLLNEFAQQQLNRDTSNR 74
Cdd:PRK12714    2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAfvgngakitDVGRVADQLAISRLLDSGGEL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  75 AFFERFTADAGRVDTMFSEESTSLSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQAVNEQL 154
Cdd:PRK12714   82 SRLQQLSSLSNRVDALYSNTATNVAGLWSNFFDSTSALSSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 155 YGLSEEANGLIEKISELNSKItavhGSDTQASASNLYNERDLAIKELSALVNIETTDGPHGEKLVFMSTGESLVMENGTF 234
Cdd:PRK12714  162 TSSVDEVNRLTQQIAKINGTI----GSSAQNAAPDLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTAS 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 235 NMFSLQGDPDPSKMELKLDVQDGkaiAIDIDPNTLKGEIGGVLAYRDEILIPAQTQLGQMALSFADAFNQQNALGMAGNG 314
Cdd:PRK12714  238 KLTTVADPYQPTKLQVAMQTQGQ---NVSLSPSSLGGQIGGLLEFRSSVLEPTQAELGRLAVGMASSFNAGHSQGMDLYG 314

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 315 ELGGDLFTL--PSVAGLAHGNSNAELSATLApgqgtNIPASDfrleftgpgANDVLVQPIDASGNAIGTASAATIAANGD 392
Cdd:PRK12714  315 AMGGNFFNIgsPTVAANPSNTGTASLSASFS-----NLSAVD---------GQNVTLSFDGTNWKATRADTGSAVPMTGT 380

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 393 VDfgGNDSF---GLQINVSTLGAIGDKVDIKLNSAAASQLTLATDQGEDLALASPIRTETNINNNSEASISAGSVTSIGT 469
Cdd:PRK12714  381 GT--AADPLvlnGVSMVVGGTPASGDKFLLQPTAGLAGSLSVAITDPSRIAAATPVKATATLANQGTGKISDVKVTNAQN 458

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 470 GFLSGPppslANGELTltkvaEPDQYTLsDSANSVTFTlsdpkdsilaqAGAPFDAYGFDFDIKGTPEVGDSFSVEFNDQ 549
Cdd:PRK12714  459 PALLTP----SSIEFI-----DANQYTI-DGAGPFAYT-----------AGQTISANGWSFALDGAPKAGDTFGVGPTGA 517

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 550 GFDDNRNGQALADLQnqnlvrqSVNAQNDGSngKTFNQAYAGTVSDIGMVTAQAQTSFGAFSALEAQSNAWYESLSGVNL 629
Cdd:PRK12714  518 GSSDNGNAKLLAKVD-------DAKALNGGT--VTLNGALSGLTTSVGSAARAANYSADAQKVINDQAQASRDSISGVNL 588

                         650       660       670
                  ....*....|....*....|....*....|....*.
gi 1356007953 630 DEEAANLLRFQQSYSASARILQTAQTVFDTLLSSAR 665
Cdd:PRK12714  589 DEEAANMLKLQQAYQAAAQMISTADTMFQAILGAVR 624
flgK PRK12715
flagellar hook-associated protein FlgK; Provisional
 4-665 6.49e-57

flagellar hook-associated protein FlgK; Provisional


Pssm-ID: 183698 [Multi-domain]  Cd Length: 649  Bit Score: 204.20  E-value: 6.49e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   4 NLLNIASSGIRASTELLNTASKNIANVNTAGYVRERTEHGGTIDNQ-----IGRG----ETYRLLNEFAQQQLNRDTSNR 74
Cdd:PRK12715    2 SILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRyagsyIGAGvsvsSIYRNVDQFANAQVRSTLSYR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  75 AFFERFTADAGRVDTMFSEESTSLSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQAVNEQL 154
Cdd:PRK12715   82 TQYDAFYNQAIQIDKLLSQDGSSISVPLQTFFDSIGQLNSTPDNIATRGVVLKQSQLLAQQFNSLQTKLEEYERNSTLQV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 155 YGLSEEANGLIEKISELNSKITAvhgsdtQASASNLYNERDLAIKELSALVNIETTDGPHGEKLVFMSTGESLVMenGTF 234
Cdd:PRK12715  162 TESVKIINRITKELAEVNGKLLG------NNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVA--GTQ 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 235 NMFSLQGDPDPSKMELKLDVQDGKAIAIDIDPNTLKGEIGGVLAYRDEILIPAQTQLGQMALSFADAFNQQNALGMAGNG 314
Cdd:PRK12715  234 QRDLVVGTGKDSIFGTKIFLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMAIGLAQTFNAQHKLGMDMNS 313

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 315 ELGGDLFTLPSVAG--LAHGNSNAELSATLAPGQG----TNIPASDFRLEFTGPGANDV-LVQPIDASGNAIGTASAATI 387
Cdd:PRK12715  314 QIGKDFFTDFNSPGqmLKRSTASADNSGTAVLSVNisdiSQVKLSDYDLIISDTGANELrLIRKSDGTSTTLTWSSSPPA 393

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 388 AANGDVDFggnDSFGLQINVSTLGAIGDKVDIKLNSAAASQLTLATDQGEDLALASPIRTETNINNNSEASISAGSVTSI 467
Cdd:PRK12715  394 PPAGQVVI---DGMTITVNDLSQLANNDHYTLTPTRGAARDFALEIKDAYEIALASPVKTTASLNNTGQGQIILGPVLNT 470

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 468 GTgflsgpppslANGELTLTKVAEpDQYTL---SDSANSVTFTLSDPKDSILAQAGAPFDAYgfDFDIKGTPEVGDSFSV 544
Cdd:PRK12715  471 AS----------VNKQFRIDFISD-TQYNLvnvTDSTTAGPFAFVPNTNNVIQIPDGITPSY--SVVLSGIPKSGDQFTT 537

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 545 EFNDQGFDDNRNGQALADLQNQNLVrqsvnaqndgSNG-KTFNQAYAGTVSDIGMVTAQAQTSFGAFSALEAQSNAWYES 623
Cdd:PRK12715  538 DYNTGGFGDNRNGLILGNIQQNKIF----------SNGsETLFDRYGSLLAEVGGRTNQAKTSFESADILHKQALDFQDS 607

                         650       660       670       680
                  ....*....|....*....|....*....|....*....|..
gi 1356007953 624 LSGVNLDEEAANLLRFQQSYSASARILQTAQTVFDTLLSSAR 665
Cdd:PRK12715  608 KSGVNLDEEGANLLVFQQAYQAAGKLMEISNQIMNLLFDIMR 649
flgK PRK08871
flagellar hook-associated protein FlgK; Validated
 1-661 4.52e-49

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 181572 [Multi-domain]  Cd Length: 626  Bit Score: 181.58  E-value: 4.52e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   1 MSFNLLNIASSGIRASTELLNTASKNIANVNTAGYVRERTEHGGTIDNQIGrGETY----------RLLNEFAQQQLNRD 70
Cdd:PRK08871    1 MASDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNDPRQFG-GSTYgmgvhvenvrRSWDQFAVNELNLS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  71 TSNRAFFERFTADAGRVDTMFSE-ESTSLSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQA 149
Cdd:PRK08871   80 TTNLANKTDTEANLDMLSSMLSSvASKKIPENLNEWFDAVKTLADSPNDLGARKVVLEKAKLISQTLNDFHETVRQQKDV 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 150 VNEQLYGLSEEANGLIEKISELNSKITAVHGSDtqasaSNLYNERDLAIKELSALVNIETTDGPHGEKL-VFMSTGESLV 228
Cdd:PRK08871  160 TNKKLDLGVERINQIALEIRDIHRLMMRTPGPH-----NDLMDQHEKLVKELSQYTKVTVTPRKNAEGFnVHIGNGHTLV 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 229 MENGTFNMFSLQGDPDPskMELKLDVQDGKAIAiDIDPNTLKGEIGGVLAYRDEILIPAQTQLGQMALSFADAFNQQNAL 308
Cdd:PRK08871  235 SGTEASQLKMIDGYPDP--HQRRLAMVEGKGLK-AIKADDIGGKLGALLDMRDEHIPYLMDELGRLATGFSSEVNTLQSQ 311

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 309 GMAGNGELGGDLFT---LPSVA---GLAHGNSNAELSATLapGQGTNIPASDFRLEFtgpgandvlvqpiDASGNAIGTA 382
Cdd:PRK08871  312 GLDLRGNVGGNLFTdvnSEVIArsrVVTAPNSKADVAVFI--DDISQLKGGEYALRY-------------DGSQYTVTKP 376

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 383 SAATIAANGDvdfGGNDSF---GLQINVSTLGAIGDKVDIKLNSAAASQLTLATDQGEDLALASpirtetninnnSEASi 459
Cdd:PRK08871  377 SGEQQSLDPD---GNPSAFyldGMRVEVRNPPQAGERILLRPTRNGAAQIKLETNDAKKIAAQS-----------YEAS- 441

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 460 sagsvtsigTGFLSGpppslaNGELTLTKVAEPDQYTLSDSANSVTFTLSDPKDSILAQA-----GAPFDAYGFDFDIKG 534
Cdd:PRK08871  442 ---------TTFAQG------KAKFKILQAGDLREFEVIVSPTGDQFAVTDTKGNILLQPqpyppKGPVTVGGTTFELTE 506

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 535 TPEVGDSFSVEFN-DQGfdDNRNGQALADLQNQNLVrqsvnaqNDGSNgkTFNQAYAGTVSDIGMVTAQAQ--TSFGAFS 611
Cdd:PRK08871  507 GALANDKFTANLVpSEG--DNGNLRKMQNLQTDKVM-------DDGES--TIIDLYHNLNTEVGLKKATATrlADVARLE 575

                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|
gi 1356007953 612 ALEAQSNAwyESLSGVNLDEEAANLLRFQQSYSASARILQTAQTVFDTLL 661
Cdd:PRK08871  576 KEAAQSRV--ASISGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTIL 623
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 4-309 2.32e-46

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 167.14  E-value: 2.32e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   4 NLLNIASSGIRASTELLNTASKNIANVNTAGYVRER-----TEHGGTIDNQIGRG----ETYRLLNEFAQQQLNRDTSNR 74
Cdd:TIGR02492   1 SLLNIAKSGLSASQIALSVTSNNIANANTPGYSRQRavltaVPAGGQGGKQIGTGvkvtSIRRIQDQFLDNQYRRANSSA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  75 AFFERFTADAGRVDTMFSEESTS-LSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQAVNEQ 153
Cdd:TIGR02492  81 GYADSRASGLSKIEQIFNDLDGSgLGTYLNNFFNALQELAKNPDSEALRQAVLESAQALANSFNQTSNELQDLRKGINAE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 154 LYGLSEEANGLIEKISELNSKITAVHGSDTqaSASNLYNERDLAIKELSALVNIETTDGPHGEKLVFMSTGESLVM--EN 231
Cdd:TIGR02492 161 IKSAVTEINSLLKQIASLNKEIKQVEASGQ--DANDLLDQRDLLLKELSQLIGISVSENENGTVNVYTGSGQVLVDgaTV 238

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1356007953 232 GTFNMFSLQGDPDPSKMELKLDVQDGKAIAIDIDPNTLKGEIGGVLAYRDEILIPAQTQLGQMALSFADAFNQQNALG 309
Cdd:TIGR02492 239 TGSSTSPLTADTTGGKVGGDGVYLPSGSSKVTISSDLQGGKLGGLLDLRDGVLPDLQSQLDQLAKTLADEFNEVHQSG 316
flgK PRK07191
flagellar hook-associated protein FlgK; Validated
 4-350 2.82e-34

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180871 [Multi-domain]  Cd Length: 456  Bit Score: 136.11  E-value: 2.82e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   4 NLLNIASSGIRASTELLNTASKNIANVNTAGYVRERTEHGGT-IDNQIGRGETY--------RLLNEFAQQQLNRDTSNR 74
Cdd:PRK07191    2 NFIRTAFSGMQAAQAHLNATSMNIANMHTPGYSRQGVEQSAIgADGQGGVNAGNgvnvdgirRLSQQYVVMQEWQANSQQ 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  75 AFFERFTADAGRVDTMFSEESTSLSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQAVNEQL 154
Cdd:PRK07191   82 GYYDAGEQYFNALELVVGNKSTSLATGLNNFFSALSAATQLPDSPPMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQR 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 155 YGLSEEANGLIEKISELNSKITAvhGSDTQASASNLYNERDLAIKELSALVNIETTDGPHGEKLVFMSTGESLVMENGTF 234
Cdd:PRK07191  162 DATVKQINSLTRSIADYNQKILK--NRSDGNNISDLLDQRDLQIKKLSGLIEVRVVQQEDGTYRVSVKNGQPLVNGAVAA 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 235 NMFSLQGDPDPSKMELKLdvqDGKAIAIDIDpntLKGEIGGVLAYRDEILIPAQTQLGQMALSFADAFNQQNALGMAGNG 314
Cdd:PRK07191  240 ELAVDTSSVGTQKLTLHF---SGATQGMNMS---CGGQLGGLNDYELTTLKPLQDSTQEMAKTVADKFNDQLTKGFDMNG 313

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1356007953 315 ELGGDLFTLPSVAGLAHGNSNAELSATLA-------PGQGTNI 350
Cdd:PRK07191  314 APGKPLFTFNPSDPNGMLQLSAIKPEELAlsgdpkpPGDNSNL 356
flgK PRK07739
flagellar hook-associated protein FlgK; Validated
 1-349 6.85e-34

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236084 [Multi-domain]  Cd Length: 507  Bit Score: 135.91  E-value: 6.85e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   1 MSFNLLNIASSGIRASTELLNTASKNIANVNTAGYVRER-----TE-------HGGTIDNQIGRG----ETYRLLNEFAQ 64
Cdd:PRK07739    3 STFMGLETARRGLFAQQAALYVTGHNIANANTPGYTRQRvnlaaTPpyptpgmNRPKIPGQMGTGveagSVERIRDQFLD 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  65 QQLNRDTSNRAFFERFTADAGRVDTMFSEESTS-LSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGAL 143
Cdd:PRK07739   83 IQYRRENNKLGYWETKADALSQMEDIMNEPSDTgLNKVLDQFWNSLQELSKNPENLGARSVVRQRAQALAETFNYLSQSL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 144 SEQQQAVNEQLYGLSEEANGLIEKISELNSKITAV--HGSDtqasASNLYNERDLAIKELSALVNIETTDGPHGE----- 216
Cdd:PRK07739  163 TDIQNDLKSEIDVTVKEINSLASQISDLNKQIAKVepNGYL----PNDLYDQRDLLLDELSKIVNITVEYNKSGGnaled 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 217 -------KLVFMSTGESLVM-ENGTFNMFSLQGDPDP-SKMELKLDVQDGKAIAIDIDPNTLKGEIGGVLAYRDEI---- 283
Cdd:PRK07739  239 aegtfriDILGGNGKGTLVDgKDSTVNELSVNKDDVTgLVTDLSLGGTTVSWDDTGQPVNPSSGKLKGLLEMYGYMsgng 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 284 ----LIPA-QTQLGQMALSFADAFNQQNALGMAGNGELGGDLFTLPSVAG-------------LAHGNSNAELSATLAPG 345
Cdd:PRK07739  319 eekgLYPEmLNDLDKLAYTFATAFNEVHKQGYGLNGSTGIDFFDGTGDSTkgaaktikvsddiLADLNNIAAASDDGELG 398


                  ....
gi 1356007953 346 QGTN 349
Cdd:PRK07739  399 DGSN 402
flgK PRK06665
flagellar hook-associated protein FlgK; Validated
 2-661 7.30e-33

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180650 [Multi-domain]  Cd Length: 627  Bit Score: 134.41  E-value: 7.30e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   2 SFNLLNIASSGIRASTELLNTASKNIANVNTAGYVRERTEHGgTID-------------NQIGRGETY----RLLNEFAQ 64
Cdd:PRK06665    4 TFSGIEIGKRSLFAHKQALQTTGHNISNASTKGYSRQRVTMK-TFDplyapslnraekpGQIGQGVEIqsieRIRDELLD 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  65 QQLNRDTSNRAFFERFTADAGRVDTMFSE-ESTSLSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGAL 143
Cdd:PRK06665   83 SRIIEESGRLGYWKTKDKYLSQLEQVYNEpEDQSLRTRLDDFWDSWQDLSNYPEGLAERQVVLERAQSLGERIHDRYRSL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 144 SEQQQAVNEQLYGLSEEANGLIEKISELNSKITAVhgsdtQA---SASNLYNERDLAIKELSALVNIETTDGPHGEKLVF 220
Cdd:PRK06665  163 ERIRDMANDEIEITVEEINNILRNIADLNEQIVKS-----QAmgdNPNDLLDRRDLLVDKLSSLIDVSIERSDPDEFMIH 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 221 MStGESLVMENgTFNMFSLQGDPDPSKMELKLDVQDGKAIAIDidpntlKGEIGGVLAYRDEILIPAQTQLGQMALSFAD 300
Cdd:PRK06665  238 IG-GRHLVQGN-IANELDLEANPPNEGYWDILWSANGDPALLR------TGKLGALIELRDTDIRDEINELDTLAINIVD 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 301 AFNQQNALGMAGNGELGGDLFTLPSVAGLAHGN--SNaelsatlapGQGTNIPASDFRLEftgpGANDVLVQ-PIDASgn 377
Cdd:PRK06665  310 LVNEIHRSGFGLNGKTGRDFFTQEYKLTNTRGNydSN---------GDGQFDSTHIFRVN----GTNSIDPDeKIGIS-- 374

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 378 aiGTASAATIAANGDVdfggndsfglQINVSTLGAIGDKVDiKLNSAAAsQLTLATDQGEDLALASpiRTETNINNNS-- 455
Cdd:PRK06665  375 --GTLRFQASNKNGTV----------EIPYNATDTVNDVIK-RINNSNA-QVTAYLNHNNKLVLKA--TKADDDENPDfv 438

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 456 ----EASisaGSVTSIGTGFLSGpppSLANGELTLTKVAEPDQYTlsdsANSVTFTLSDPKDsilaqagaPFDAYGFDFD 531
Cdd:PRK06665  439 irhiEDS---GDFLVGYTGILNA---SGPEGAYDYQRIDTINKLQ----GNGADYTVSPLKH--------PASWIKVNDI 500

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 532 IKGTPE---VGDSFSVEFNDQGfdDNRNGQALADLQNQNLVRqsvnaqndGSNgKTFNQAYAGTVSDIGMVTAQAQTSFG 608
Cdd:PRK06665  501 IRNDPSniaAGIGDPTNPNGIG--DGRAALAIASLRNSPVMV--------GKS-KTFDDFFANTISNIGIKGETAEIEKE 569

                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1356007953 609 AFSALEAQSNAWYESLSGVNLDEEAANLLRFQQSYSASARILQTAQTVFDTLL 661
Cdd:PRK06665  570 SQNQIMKELEDLRQSVSGVNLDEELANMIEFQHGYNASARFISVSNELLDTII 622
flgK PRK07521
flagellar hook-associated protein FlgK; Validated
 1-343 7.84e-15

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236038 [Multi-domain]  Cd Length: 483  Bit Score: 77.28  E-value: 7.84e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   1 MSFNL-LNIASSGIRASTELLNTASKNIANVNTAGYVRER----TEHGGTIDNQIGRGETYRLLNEF--AQQQLNRDTSN 73
Cdd:PRK07521    1 MSLSSaLNTAQSGLTATSRQTSVVSRNIANAGTPGYSRREaslvSGPAGGQVVGISRAQDPALLAQRllATSAAAAQDTL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  74 RAFFERFTADAGRVDTmfseeSTSLSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQAVNEQ 153
Cdd:PRK07521   81 ADGLERLASTVGDNDY-----EGSPSARLSDFQAALQTAASSPDNTTLAQAAVDAAQDLANSLNDASDAVQSARADADAE 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 154 LYGLSEEANGLIEKISELNSKITAvhGSDTQASASNLYNERDLAIKELSALVNIETTDGPHGEKLVFMSTGESLVMENGT 233
Cdd:PRK07521  156 IADSVDTLNDLLAQFEDANNAVVS--GTATGRDASDALDQRDKLLKQISQIVGVTTVTRDNNDMALYTDGGVTLFETTPR 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 234 FNMFSLQGDPDPSkMELKLDVQDGKAIAIDIDPNTLK-GEIGGVLAYRDEILIPAQTQLGQMALSFADAF---NQQNALG 309
Cdd:PRK07521  234 TVTFTPTATYTAG-TTGNAVYIDGVPLTGGSGVMPLAgGSLAALLQLRDEIAPTYQAQLDEIARGLITRFaesDPTGAAG 312

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1356007953 310 MAGngelggdLFTLPSVAGLAhGNSNAELSATLA 343
Cdd:PRK07521  313 DPG-------LFTDSGAPADP-AAGEAGLAGRIS 338
flgK PRK06799
flagellar hook-associated protein FlgK; Validated
 1-256 7.22e-14

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180699 [Multi-domain]  Cd Length: 431  Bit Score: 74.15  E-value: 7.22e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   1 MSFNLLNIASSGIRASTELLNTASKNIANVNTAGYVRERTEHGG-------TIDNQIGRG----ETYRLLNEFAQQQLNR 69
Cdd:PRK06799    1 MRLSDYNTPLSGMLAAQMGLQTTQQNLSNIHTPGYVRQMVNYGSvgasgglLPEQQIGYGvqtlGVDRITDEVKTKQYND 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  70 DTSNRAFFERFTADAGRVDTMF-SEESTSLSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQ 148
Cdd:PRK06799   81 QLSQLSYYNYMNSALSRVESMVgTTGKNSLSSLMDGFFNAFREVAKNPEQANYYDTLISETGKFTSQLNRLAKGLDELEA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 149 AVNEQLYGLSEEANGLIEKISELNSKItavhGSDTQASASNLYNERDLAIKELSALVNIETTDGPHGEKLVFMSTGESLV 228
Cdd:PRK06799  161 QTTEDIEAHVNEFNRLAKSLAEANKKI----GQAGTQVPNQLLDERDRILTEMSKYANIEVSYESMNPNIASVRMNGVLT 236

                         250       260
                  ....*....|....*....|....*...
gi 1356007953 229 MeNGTfNMFSLQGDPDPSKMELKLDVQD 256
Cdd:PRK06799  237 V-NGQ-DTYPLQLNKTKEPMEFEIYGSE 262
flgK PRK08471
flagellar hook-associated protein FlgK; Validated
 3-662 1.67e-13

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236270 [Multi-domain]  Cd Length: 613  Bit Score: 73.54  E-value: 1.67e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   3 FNLLNIASSGIRASTELLNTASKNIANVNTAGYVRER-----TEHGGTIDNQIGRG---ETY-RLLNEFAQQQLNRDTSN 73
Cdd:PRK08471    5 FSSLNTGYTGLQAAQVMVDTTGNNISNASSEFYTRQRvvqsaQAALNTGGGNVGTGtdiETIvRIHDEFVYSRYKKASTE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953  74 RAFFERFTADAGRVDTMFSE-ESTSLSTQINNVFNNLQEALNQPANSTTRSLFFSNAQGFVDQLHTLSGALSEQQQAVNE 152
Cdd:PRK08471   85 LEYTDYEFSTLQEASQYFPDlDDTGILKDLQDYFNAWNDFASNPKDSAQKQALAQKTETLTNNIKDTRERLDTLQKKVNE 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 153 QLYGLSEEANGLIEKISELNSKITAVHGSDTQASASNLYNERDLAIKELSALVN-------------IETTDGPHGEKLV 219
Cdd:PRK08471  165 ELKVTVDEINSLGKQIAEINKQIKEVEAGKTLKHANELRDKRDELELTLSKLVGanvfkssiksdsrLDTTSADFGESYN 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 220 FMSTGESLVmENGTFNMFSLQGDPDPSKM-ELKLDVQDGKAIAIDIDPNtlKGEIGGVLAYR--------DEILIPAQTQ 290
Cdd:PRK08471  245 LNIGGFNIV-DGSNFHPLVLDEDENKGGFnQIYYESDDFKRIDITDKIS--GGKVGALLDLRgrnydggsGGTLDGKIQD 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 291 LGQMALSFADAF-NQQNALgmagngelggdlftLPSVAglAHGNSNAELSATlapgqgTNIPASDFRLEFTgPGANDVLV 369
Cdd:PRK08471  322 YIDNLDTFAKTLiESTNNI--------------YAQSA--TESIESDPLSLK------SDEALVDTNYNIQ-NGSFDLVV 378

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 370 qpIDASGNAIGTASaatiaangdvdfggndsfglqINVSTLGAIGDKVdiklnsaaaSQLTLATDQGEDlalaspIRTET 449
Cdd:PRK08471  379 --YDTDGKEVARKT---------------------INIDVITTMNDIV---------QQINANTDDNND------NNANN 420

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 450 NINNNSEASISAGSVTSIGTGFLSgppPSLANGELTL---------TKVAEPDQYTLSDSANSVTFTLSDPKDSILAQAG 520
Cdd:PRK08471  421 DVDDYFTASFNNDTKTGDGLFQIQ---PKNASQGYTVsiedkgtnfPGALGLNRFFDGDDASNISLNSSYKKDPTTIRAW 497

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 521 ApfdaygfdfdikgTPEVGDsfsvefndqgfddnrNGQALADLQNQNlvrQSVNAQNDGSNGK--TFNQAYAGTVSDIGM 598
Cdd:PRK08471  498 L-------------APVDGN---------------NDVANKMQQLQY---DKVNFYNNKGTIKnmTIEEYYRFLTTKIAS 546

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1356007953 599 VTAQAQTSFGAFSALEAQSNAWYESLSGVNLDEEAANLLRFQQSYSASARILQTAQTVFDTLLS 662
Cdd:PRK08471  547 DTEKNNRINDTNKALLNSVKKEYQSISGVSTDEELVNLIKFQSSYGAAAKIITTIDQMLDTLLG 610
flgE PRK06803
flagellar basal body protein FlaE;
1-41 3.57e-05

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 46.69  E-value: 3.57e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1356007953   1 MSFNllnIASSGIRASTELLNTASKNIANVNTAGYVRERTE 41
Cdd:PRK06803    1 MSFN---IALSGLNATTQQLNTISNNIANSSTKGFKGSRTE 38
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 625-662 1.01e-04

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 41.10  E-value: 1.01e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1356007953 625 SGVNLDEEAANLLRFQQSYSASARILQTAQTVFDTLLS 662
Cdd:pfam06429  36 SNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQ 73
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 4-53 2.04e-04

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 43.39  E-value: 2.04e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1356007953   4 NLLNIASSGIRASTELLNTASKNIANVNTAGYVRERTE------HGGTIDNQIGRG 53
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEfqdllsQSVSGSGQVGGG 56
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-53 2.78e-04

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 43.62  E-value: 2.78e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1356007953   1 MSFNllnIASSGIRASTELLNTASKNIANVNTAGYVRERTE--------HGGTIDNQIGRG 53
Cdd:COG1749     3 MSFN---TGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEfadlvaqsLSGANPTQVGGG 60
flgK PRK06799
flagellar hook-associated protein FlgK; Validated
 582-662 4.34e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180699 [Multi-domain]  Cd Length: 431  Bit Score: 43.33  E-value: 4.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 582 GKTFNQAY----AGTVSDIGMVTAQAQTSFGAFSALEAQSNawyeSLSGVNLDEEAANLLRFQQSYSASARILQTAQTVF 657
Cdd:PRK06799  349 GLSYKQALdqfiVGVASDKSAVNAYQKIHTDLLEGIQQEKM----SLEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVF 424


                  ....*
gi 1356007953 658 DTLLS 662
Cdd:PRK06799  425 DSLFS 429
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-34 1.42e-03

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 39.42  E-value: 1.42e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1356007953   1 MS-FNLLNIASSGIRASTELLNTASKNIANVNTAG 34
Cdd:PRK05681    1 MSlFSSFNIAGSGLSAQSQRLNVISSNIANADSTA 35
flgL PRK12717
flagellar hook-associated protein 3;
373-657 1.89e-03

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 41.27  E-value: 1.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 373 DASGNAIgTASAATiaaNGDVDFGGNDSfglqiNVSTLGAIGDKVDIKL--NSAAASQLTLATDQGEDLALASPIRTETN 450
Cdd:PRK12717  243 DASGNDV-TSEASG---GGKFDPGTEGG-----QTISFRGVDLELNVNLkaGSGADADAALAGHSFTLQSKPDTFTATRS 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 451 INNNSEASISAGSVTSiGTGFLSGPPPSLAngELTLTKVAEPDQYTLSDSANSvtftlsdPKDSILAQAGAPFDAYGFDF 530
Cdd:PRK12717  314 PGNTSTAQVTGATITD-PAAYNSTFPSSGA--VLKFTSATAYELYAQPVTADS-------KPISSGTLTGNTATAAGVTF 383

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953 531 DIKGTPEVGDSFSVEFNDQgfddnrngqaladlQNQNLV------RQSVNAQNDGSNGKT--FNQAYAGTVSDIGMVTAQ 602
Cdd:PRK12717  384 TLSGTPAAGDQFSVQANTH--------------QTQNILdtlsqlRKALSTPTDGDPAARqaLRAALASALGNLASAIDQ 449

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1356007953 603 ---AQTSFGA-FSALEAQSNAwYESLSGVNLDE----------EAANLLRFQQSysasarILQTAQTVF 657
Cdd:PRK12717  450 vdtARSSIGArGNALDIQGTT-NESLSLANTTTqssirdsdpaEATTRLTLQQT------MLEASQLAF 511
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
6-41 4.48e-03

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 39.41  E-value: 4.48e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1356007953   6 LNIASSGIRASTELLNTASKNIANVNTAGYVRERTE 41
Cdd:COG4786     1 LYTAASGMLAQQTRLDVISNNLANVNTTGFKRDRAV 36
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 6-41 8.65e-03

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 37.09  E-value: 8.65e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1356007953   6 LNIASSGIRASTELLNTASKNIANVNTAGYVRERTE 41
Cdd:PRK12632    8 LSVSASGMRAQALRLRHVSENIANADTPGYRRKTVS 43
flgB PRK12623
flagellar basal body rod protein FlgB; Provisional
 7-114 1.00e-02

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183630  Cd Length: 131  Bit Score: 36.69  E-value: 1.00e-02
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356007953   7 NIASSGIRASTELLNTASKNIANVNTAGYVRERTEHGGTIDNQIGRGET-------YRLLNEFAQQQLNRDTSNraffeR 79
Cdd:PRK12623   14 DLLKKGLDASSYRGKVISNNIANVNTKGYKRHYVTFEENLKNNLDNLELkttnekhINDGVEFGQIKEKVDEST-----S 88

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1356007953  80 FTADAGRVDtMFSE---------ESTSLSTQINNVFNNLQEALN 114
Cdd:PRK12623   89 MRTDGNNVD-IDNEmvnqaantlMYNALITQLNNRLATTRYVIN 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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