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Conserved domains on  [gi|1356008254|ref|WP_105190840|]
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outer membrane protein assembly factor BamA [Pseudoalteromonas sp. T1lg48]

Protein Classification

outer membrane protein assembly factor BamA( domain architecture ID 1002628)

outer membrane protein assembly factor BamA is part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane

Gene Ontology:  GO:0051205|GO:0009279|GO:0071709
PubMed:  21823654|26901871|26744406|26900875

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK11067 super family cl35984
outer membrane protein assembly factor YaeT; Provisional
 1-823 0e+00

outer membrane protein assembly factor YaeT; Provisional


The actual alignment was detected with superfamily member PRK11067:

Pssm-ID: 236834 [Multi-domain]  Cd Length: 803  Bit Score: 913.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254   1 MAIKKHLaVTSLLGASFAALGQESFIVEDLKVEGLQRVALGAALTHIPINVGDQIDTYTVSKTIKALYKSGHFDDIEVYR 80
Cdd:PRK11067    1 MAMKKLL-IASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254  81 DGDKIVFKVTERPTISAIEFEGNKDIKDEQLNESLNQQNIRTGEPLDRTVLDNVQKGLVEFFHSIGKYNAKLDLEIIRLP 160
Cdd:PRK11067   80 DGNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 161 RNRVRLKLNFDEGDAASIRQINIVGNELFPDEELLGLVESQQDLPWWKFMSSDRYQKQTIEGDLEKIRSYYLDRGYLRFN 240
Cdd:PRK11067  160 RNRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFN 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 241 IDSTQVSVSPERESVYVTANVTEGEKYRVKGFDFIGDLLGREELIRSVVPLKAGELYNGSVVTASEEFIKSYLARFGYAN 320
Cdd:PRK11067  240 IDSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAY 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 321 AVVRTIPEIDDETKEVQLVLSVDPGKRVYVRRIDISGNQSTADEVIRREMTQLEGAWLSNQNLERSKLQIQRLPYMENVE 400
Cdd:PRK11067  320 PRVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVD 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 401 FEVNPVPGVDDEVDVGFTVKEQSAGSFTAGLAYGSYYGLQFNIGISESNFLGSGNQVAFNINTSRGSESISLSYTDPYFT 480
Cdd:PRK11067  400 VDTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFT 479

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 481 PDGVSQGSSIFYRNYDASAFSLIDYKSKSYGIGTNIGFPVNAVNRLNFGVRWIEEELSDLAEYEQT-RVLRETFLDPE-N 558
Cdd:PRK11067  480 VDGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMwRYLYSMGENPSsD 559

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 559 PDAGFEFTKYELSAGWSRVTVNRGMFPTAGSRQSLNLSATTPNSDLTYFKINYDSRYYWPVSDDHRWVFSARAALGYGNG 638
Cdd:PRK11067  560 SDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDG 639

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 639 YGETNgydqvLPVQE-FFRITEQELRGFDRNTILPRAVVRspqNIPGTTLPDGTPTGNIGGAEEfdtlqlagrIGGNAKA 717
Cdd:PRK11067  640 LGGKE-----MPFYEnFYAGGSSTVRGFQSNTIGPKAVYY---PGQASNYTQDGAKDLCKSDDA---------VGGNAMA 702

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 718 VAGLEMIVPTPFLDEENSSSVRTSFFVDAANVWDTEFNvDRYQSLQpnerARLDDYSDPGRFRVSTGLSIQWISPMGPML 797
Cdd:PRK11067  703 VASLELITPTPFISDKYANSVRTSFFWDMGTVWDTNWD-NTAYTRA----AGYPDYSDPSNIRMSAGIALQWMSPLGPLV 777

                         810       820
                  ....*....|....*....|....*.
gi 1356008254 798 ISFAYPLQEEEDDDTKTISFNISNTF 823
Cdd:PRK11067  778 FSYAQPFKKYDGDKAEQFQFNIGKTW 803
 
Name Accession Description Interval E-value
PRK11067 PRK11067
outer membrane protein assembly factor YaeT; Provisional
 1-823 0e+00

outer membrane protein assembly factor YaeT; Provisional


Pssm-ID: 236834 [Multi-domain]  Cd Length: 803  Bit Score: 913.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254   1 MAIKKHLaVTSLLGASFAALGQESFIVEDLKVEGLQRVALGAALTHIPINVGDQIDTYTVSKTIKALYKSGHFDDIEVYR 80
Cdd:PRK11067    1 MAMKKLL-IASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254  81 DGDKIVFKVTERPTISAIEFEGNKDIKDEQLNESLNQQNIRTGEPLDRTVLDNVQKGLVEFFHSIGKYNAKLDLEIIRLP 160
Cdd:PRK11067   80 DGNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 161 RNRVRLKLNFDEGDAASIRQINIVGNELFPDEELLGLVESQQDLPWWKFMSSDRYQKQTIEGDLEKIRSYYLDRGYLRFN 240
Cdd:PRK11067  160 RNRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFN 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 241 IDSTQVSVSPERESVYVTANVTEGEKYRVKGFDFIGDLLGREELIRSVVPLKAGELYNGSVVTASEEFIKSYLARFGYAN 320
Cdd:PRK11067  240 IDSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAY 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 321 AVVRTIPEIDDETKEVQLVLSVDPGKRVYVRRIDISGNQSTADEVIRREMTQLEGAWLSNQNLERSKLQIQRLPYMENVE 400
Cdd:PRK11067  320 PRVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVD 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 401 FEVNPVPGVDDEVDVGFTVKEQSAGSFTAGLAYGSYYGLQFNIGISESNFLGSGNQVAFNINTSRGSESISLSYTDPYFT 480
Cdd:PRK11067  400 VDTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFT 479

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 481 PDGVSQGSSIFYRNYDASAFSLIDYKSKSYGIGTNIGFPVNAVNRLNFGVRWIEEELSDLAEYEQT-RVLRETFLDPE-N 558
Cdd:PRK11067  480 VDGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMwRYLYSMGENPSsD 559

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 559 PDAGFEFTKYELSAGWSRVTVNRGMFPTAGSRQSLNLSATTPNSDLTYFKINYDSRYYWPVSDDHRWVFSARAALGYGNG 638
Cdd:PRK11067  560 SDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDG 639

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 639 YGETNgydqvLPVQE-FFRITEQELRGFDRNTILPRAVVRspqNIPGTTLPDGTPTGNIGGAEEfdtlqlagrIGGNAKA 717
Cdd:PRK11067  640 LGGKE-----MPFYEnFYAGGSSTVRGFQSNTIGPKAVYY---PGQASNYTQDGAKDLCKSDDA---------VGGNAMA 702

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 718 VAGLEMIVPTPFLDEENSSSVRTSFFVDAANVWDTEFNvDRYQSLQpnerARLDDYSDPGRFRVSTGLSIQWISPMGPML 797
Cdd:PRK11067  703 VASLELITPTPFISDKYANSVRTSFFWDMGTVWDTNWD-NTAYTRA----AGYPDYSDPSNIRMSAGIALQWMSPLGPLV 777

                         810       820
                  ....*....|....*....|....*.
gi 1356008254 798 ISFAYPLQEEEDDDTKTISFNISNTF 823
Cdd:PRK11067  778 FSYAQPFKKYDGDKAEQFQFNIGKTW 803
OM_YaeT TIGR03303
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ...
 25-823 0e+00

outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274514 [Multi-domain]  Cd Length: 741  Bit Score: 876.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254  25 FIVEDLKVEGLQRVALGAALTHIPINVGDQIDTYTVSKTIKALYKSGHFDDIEVYRDGDKIVFKVTERPTISAIEFEGNK 104
Cdd:TIGR03303   1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 105 DIKDEQLNESLNqqNIRTGEPLDRTVLDNVQKGLVEFFHSIGKYNAKLDLEIIRLPRNRVRLKLNFDEGDAASIRQINIV 184
Cdd:TIGR03303  81 EIKKDQLKKALV--GIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 185 GNELFPDEELLGLVESQQDLPWWKFMSSDRYQKQTIEGDLEKIRSYYLDRGYLRFNIDSTQVSVSPERESVYVTANVTEG 264
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 265 EKYRVKGFDFIGDLLGREELIRSVVPLKAGELYNGSVVTASEEFIKSYLARFGYANAVVRTIPEIDDETKEVQLVLSVDP 344
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 345 GKRVYVRRIDISGNQSTADEVIRREMTQLEGAWLSNQNLERSKLQIQRLPYMENVEFEVNPVpGVDDEVDVGFTVKEQSA 424
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQPT 397

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 425 GSFTAGLAYGSYYGLQFNIGISESNFLGSGNQVAFNINTSRGSESISLSYTDPYFTPDGVSQGSSIFYRNYDASAFSLID 504
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 505 YKSKSYGIGTNIGFPVNAVNRLNFGVRWIEEELSDLAEYEQTrvlRETFLDpenpDAGFEFTKYELSAGWSRVTVNRGMF 584
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKDDSDSDSS---ASYFIK----EQGGKFIDSSLSYGWSYDTLDSGYF 550

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 585 PTAGSRQSLNLSATTPNSDLTYFKINYDSRYYWPVSDDHRWVFSARAALGYGNGYGETNgydqvLPVQEFFRITEQ-ELR 663
Cdd:TIGR03303 551 PTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKD-----LPFYERFYAGGIgSVR 625

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 664 GFDRNTILPRAVVrspqnipgttlpdgtPTGNiggaeefdtlqlagRIGGNAKAVAGLEMIVPTPFLDEENssSVRTSFF 743
Cdd:TIGR03303 626 GFESNGIGPRDIN---------------DSGD--------------SIGGNAMATANVELIFPLPFLPEDN--GLRGSVF 674

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 744 VDAANVWDTEFNVDryqslqpnerarlDDYSDPGRFRVSTGLSIQWISPMGPMLISFAYPLQEEEDDDTKTISFNISNTF 823
Cdd:TIGR03303 675 FDAGNVWGTDQKKE-------------GDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
BamA COG4775
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
27-823 0e+00

Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443807 [Multi-domain]  Cd Length: 711  Bit Score: 644.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254  27 VEDLKVEGLQRVALGAALTHIPINVGDQIDTYTVSKTIKALYKSGHFDDIEVYRDGDKIVFKVTERPTISAIEFEGNKDI 106
Cdd:COG4775     1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 107 KDEQLNESLNqqnIRTGEPLDRTVLDNVQKGLVEFFHSIGKYNAKLDleiIRLPRNRVRLKLNFDEGDAASIRQINIVGN 186
Cdd:COG4775    81 KDEDLKKELG---LKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT---ITPERNRVDLTFEIDEGEKAKIKKINFVGN 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 187 ELFPDEELLGLVESQQDLPWWKfmsSDRYQKQTIEGDLEKIRSYYLDRGYLRFNIDSTQVSVSPERESVYVTANVTEGEK 266
Cdd:COG4775   155 KAFSDKELRKVLKTKESGWLTK---SDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 267 YRVKGFDFIGDLLGREELiRSVVPLKAGELYNGSVVTASEEFIKSYLARFGYANAVVRTIPEIDDETKEVQLVLSVDPGK 346
Cdd:COG4775   232 YKVGDIKFEGNLVDEEEL-RKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 347 RVYVRRIDISGNQSTADEVIRREMTQLEGAWLSNQNLERSKLQIQRLPYMENVEFEVNPVPGVDDEVDVGFTVKEQSAGS 426
Cdd:COG4775   311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 427 FTAGLAYGSYYGLQFNIGISESNFLGSGNQVAFNINTSRGSESISLSYTDPYFTPDGVSQGSSIFYRNYDASAFSliDYK 506
Cdd:COG4775   391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASDYS--SYD 468

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 507 SKSYGIGTNIGFPVNAVNRLNFGVRwieeelsdlaeYEQTRVLRETFLDPENPDAGFEFTKYELSAGWSRVTVNRGMFPT 586
Cdd:COG4775   469 LKRTGGGLGLGYPLSEDLRLSLGYG-----------YERTDISDVDSSPDYLPDQNGSSNTSSLGLGLTYDTRDNPLFPT 537

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 587 AGSRQSLNLSATTP--NSDLTYFKINYDSRYYWPVSDDhrWVFSARAALGYGNGYGETngydqvLPVQEFFRI-TEQELR 663
Cdd:COG4775   538 RGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLGKK--LVLALRAEAGYLGGYGKD------LPFFERFYLgGFGSLR 609

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 664 GFDRNTILPravvrspqnipgttlpdgtptgniggaeefdtlqlagRIGGNAKAVAGLEMIVPTPFldeENSSSVRTSFF 743
Cdd:COG4775   610 GYEENSLGP-------------------------------------RLGGNAYLLGSAELRFPLPL---PPSAGLRGALF 649

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 744 VDAANVWDTefnvdryqslqpnerarlDDYSDPGRFRVSTGLSIQWISPMGPMLISFAYPLQEEEDDDTKTISFNISNTF 823
Cdd:COG4775   650 VDAGNVWDS------------------GDDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
Omp85 pfam01103
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ...
 449-819 2.96e-75

Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.


Pssm-ID: 460065 [Multi-domain]  Cd Length: 319  Bit Score: 247.66  E-value: 2.96e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 449 NFLGSGNQVAFNINTSRGSESISLSYTDPYFTPDGVSQGSSIFYRNYDASAFSLIDYKSKSYGIGTNIGFPVNAVNRLNF 528
Cdd:pfam01103   1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 529 GVRWieeelsDLAEYEQTRVLRETFLDPENPDAGFEFTKYELSAGWSRVTVNRGMFPTAGSRQSLNLSAT--TPNSDLTY 606
Cdd:pfam01103  81 GLGY------QHNKILDESGSPNIRNYYPSASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTgpFLGGDVSY 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 607 FKINYDSRYYWPVSDDHRWVFSARAALGYGNGYGETNgydqvLPVQEFFRI--TEQeLRGFDRNTILPRAVVRSPqnipg 684
Cdd:pfam01103 155 YKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKD-----LPFYERFYAggSNS-VRGFEYGGIGPRDEDGDA----- 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 685 ttlpdgtptgniggaeefdtlqlagrIGGNAKAVAGLEMIVPTPFLDEensSSVRTSFFVDAANVWDTEFNVDRYqslqp 764
Cdd:pfam01103 224 --------------------------LGGNSYVVASLELRFPLPFVPK---QSVRGVLFFDAGNVWNTGSTDPGS----- 269

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1356008254 765 nerarLDDYSDPGRFRVSTGLSIQWISPMGPMLISFAYPLQEEEDDDTKTISFNI 819
Cdd:pfam01103 270 -----SRGARSKAGIRASVGVGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
 
Name Accession Description Interval E-value
PRK11067 PRK11067
outer membrane protein assembly factor YaeT; Provisional
 1-823 0e+00

outer membrane protein assembly factor YaeT; Provisional


Pssm-ID: 236834 [Multi-domain]  Cd Length: 803  Bit Score: 913.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254   1 MAIKKHLaVTSLLGASFAALGQESFIVEDLKVEGLQRVALGAALTHIPINVGDQIDTYTVSKTIKALYKSGHFDDIEVYR 80
Cdd:PRK11067    1 MAMKKLL-IASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254  81 DGDKIVFKVTERPTISAIEFEGNKDIKDEQLNESLNQQNIRTGEPLDRTVLDNVQKGLVEFFHSIGKYNAKLDLEIIRLP 160
Cdd:PRK11067   80 DGNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 161 RNRVRLKLNFDEGDAASIRQINIVGNELFPDEELLGLVESQQDLPWWKFMSSDRYQKQTIEGDLEKIRSYYLDRGYLRFN 240
Cdd:PRK11067  160 RNRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFN 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 241 IDSTQVSVSPERESVYVTANVTEGEKYRVKGFDFIGDLLGREELIRSVVPLKAGELYNGSVVTASEEFIKSYLARFGYAN 320
Cdd:PRK11067  240 IDSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAY 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 321 AVVRTIPEIDDETKEVQLVLSVDPGKRVYVRRIDISGNQSTADEVIRREMTQLEGAWLSNQNLERSKLQIQRLPYMENVE 400
Cdd:PRK11067  320 PRVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVD 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 401 FEVNPVPGVDDEVDVGFTVKEQSAGSFTAGLAYGSYYGLQFNIGISESNFLGSGNQVAFNINTSRGSESISLSYTDPYFT 480
Cdd:PRK11067  400 VDTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFT 479

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 481 PDGVSQGSSIFYRNYDASAFSLIDYKSKSYGIGTNIGFPVNAVNRLNFGVRWIEEELSDLAEYEQT-RVLRETFLDPE-N 558
Cdd:PRK11067  480 VDGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMwRYLYSMGENPSsD 559

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 559 PDAGFEFTKYELSAGWSRVTVNRGMFPTAGSRQSLNLSATTPNSDLTYFKINYDSRYYWPVSDDHRWVFSARAALGYGNG 638
Cdd:PRK11067  560 SDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDG 639

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 639 YGETNgydqvLPVQE-FFRITEQELRGFDRNTILPRAVVRspqNIPGTTLPDGTPTGNIGGAEEfdtlqlagrIGGNAKA 717
Cdd:PRK11067  640 LGGKE-----MPFYEnFYAGGSSTVRGFQSNTIGPKAVYY---PGQASNYTQDGAKDLCKSDDA---------VGGNAMA 702

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 718 VAGLEMIVPTPFLDEENSSSVRTSFFVDAANVWDTEFNvDRYQSLQpnerARLDDYSDPGRFRVSTGLSIQWISPMGPML 797
Cdd:PRK11067  703 VASLELITPTPFISDKYANSVRTSFFWDMGTVWDTNWD-NTAYTRA----AGYPDYSDPSNIRMSAGIALQWMSPLGPLV 777

                         810       820
                  ....*....|....*....|....*.
gi 1356008254 798 ISFAYPLQEEEDDDTKTISFNISNTF 823
Cdd:PRK11067  778 FSYAQPFKKYDGDKAEQFQFNIGKTW 803
OM_YaeT TIGR03303
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ...
 25-823 0e+00

outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274514 [Multi-domain]  Cd Length: 741  Bit Score: 876.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254  25 FIVEDLKVEGLQRVALGAALTHIPINVGDQIDTYTVSKTIKALYKSGHFDDIEVYRDGDKIVFKVTERPTISAIEFEGNK 104
Cdd:TIGR03303   1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 105 DIKDEQLNESLNqqNIRTGEPLDRTVLDNVQKGLVEFFHSIGKYNAKLDLEIIRLPRNRVRLKLNFDEGDAASIRQINIV 184
Cdd:TIGR03303  81 EIKKDQLKKALV--GIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 185 GNELFPDEELLGLVESQQDLPWWKFMSSDRYQKQTIEGDLEKIRSYYLDRGYLRFNIDSTQVSVSPERESVYVTANVTEG 264
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 265 EKYRVKGFDFIGDLLGREELIRSVVPLKAGELYNGSVVTASEEFIKSYLARFGYANAVVRTIPEIDDETKEVQLVLSVDP 344
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 345 GKRVYVRRIDISGNQSTADEVIRREMTQLEGAWLSNQNLERSKLQIQRLPYMENVEFEVNPVpGVDDEVDVGFTVKEQSA 424
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQPT 397

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 425 GSFTAGLAYGSYYGLQFNIGISESNFLGSGNQVAFNINTSRGSESISLSYTDPYFTPDGVSQGSSIFYRNYDASAFSLID 504
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 505 YKSKSYGIGTNIGFPVNAVNRLNFGVRWIEEELSDLAEYEQTrvlRETFLDpenpDAGFEFTKYELSAGWSRVTVNRGMF 584
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKDDSDSDSS---ASYFIK----EQGGKFIDSSLSYGWSYDTLDSGYF 550

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 585 PTAGSRQSLNLSATTPNSDLTYFKINYDSRYYWPVSDDHRWVFSARAALGYGNGYGETNgydqvLPVQEFFRITEQ-ELR 663
Cdd:TIGR03303 551 PTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKD-----LPFYERFYAGGIgSVR 625

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 664 GFDRNTILPRAVVrspqnipgttlpdgtPTGNiggaeefdtlqlagRIGGNAKAVAGLEMIVPTPFLDEENssSVRTSFF 743
Cdd:TIGR03303 626 GFESNGIGPRDIN---------------DSGD--------------SIGGNAMATANVELIFPLPFLPEDN--GLRGSVF 674

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 744 VDAANVWDTEFNVDryqslqpnerarlDDYSDPGRFRVSTGLSIQWISPMGPMLISFAYPLQEEEDDDTKTISFNISNTF 823
Cdd:TIGR03303 675 FDAGNVWGTDQKKE-------------GDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
BamA COG4775
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
27-823 0e+00

Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443807 [Multi-domain]  Cd Length: 711  Bit Score: 644.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254  27 VEDLKVEGLQRVALGAALTHIPINVGDQIDTYTVSKTIKALYKSGHFDDIEVYRDGDKIVFKVTERPTISAIEFEGNKDI 106
Cdd:COG4775     1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 107 KDEQLNESLNqqnIRTGEPLDRTVLDNVQKGLVEFFHSIGKYNAKLDleiIRLPRNRVRLKLNFDEGDAASIRQINIVGN 186
Cdd:COG4775    81 KDEDLKKELG---LKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT---ITPERNRVDLTFEIDEGEKAKIKKINFVGN 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 187 ELFPDEELLGLVESQQDLPWWKfmsSDRYQKQTIEGDLEKIRSYYLDRGYLRFNIDSTQVSVSPERESVYVTANVTEGEK 266
Cdd:COG4775   155 KAFSDKELRKVLKTKESGWLTK---SDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 267 YRVKGFDFIGDLLGREELiRSVVPLKAGELYNGSVVTASEEFIKSYLARFGYANAVVRTIPEIDDETKEVQLVLSVDPGK 346
Cdd:COG4775   232 YKVGDIKFEGNLVDEEEL-RKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 347 RVYVRRIDISGNQSTADEVIRREMTQLEGAWLSNQNLERSKLQIQRLPYMENVEFEVNPVPGVDDEVDVGFTVKEQSAGS 426
Cdd:COG4775   311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 427 FTAGLAYGSYYGLQFNIGISESNFLGSGNQVAFNINTSRGSESISLSYTDPYFTPDGVSQGSSIFYRNYDASAFSliDYK 506
Cdd:COG4775   391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASDYS--SYD 468

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 507 SKSYGIGTNIGFPVNAVNRLNFGVRwieeelsdlaeYEQTRVLRETFLDPENPDAGFEFTKYELSAGWSRVTVNRGMFPT 586
Cdd:COG4775   469 LKRTGGGLGLGYPLSEDLRLSLGYG-----------YERTDISDVDSSPDYLPDQNGSSNTSSLGLGLTYDTRDNPLFPT 537

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 587 AGSRQSLNLSATTP--NSDLTYFKINYDSRYYWPVSDDhrWVFSARAALGYGNGYGETngydqvLPVQEFFRI-TEQELR 663
Cdd:COG4775   538 RGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLGKK--LVLALRAEAGYLGGYGKD------LPFFERFYLgGFGSLR 609

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 664 GFDRNTILPravvrspqnipgttlpdgtptgniggaeefdtlqlagRIGGNAKAVAGLEMIVPTPFldeENSSSVRTSFF 743
Cdd:COG4775   610 GYEENSLGP-------------------------------------RLGGNAYLLGSAELRFPLPL---PPSAGLRGALF 649

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 744 VDAANVWDTefnvdryqslqpnerarlDDYSDPGRFRVSTGLSIQWISPMGPMLISFAYPLQEEEDDDTKTISFNISNTF 823
Cdd:COG4775   650 VDAGNVWDS------------------GDDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
Omp85 pfam01103
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ...
 449-819 2.96e-75

Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.


Pssm-ID: 460065 [Multi-domain]  Cd Length: 319  Bit Score: 247.66  E-value: 2.96e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 449 NFLGSGNQVAFNINTSRGSESISLSYTDPYFTPDGVSQGSSIFYRNYDASAFSLIDYKSKSYGIGTNIGFPVNAVNRLNF 528
Cdd:pfam01103   1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 529 GVRWieeelsDLAEYEQTRVLRETFLDPENPDAGFEFTKYELSAGWSRVTVNRGMFPTAGSRQSLNLSAT--TPNSDLTY 606
Cdd:pfam01103  81 GLGY------QHNKILDESGSPNIRNYYPSASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTgpFLGGDVSY 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 607 FKINYDSRYYWPVSDDHRWVFSARAALGYGNGYGETNgydqvLPVQEFFRI--TEQeLRGFDRNTILPRAVVRSPqnipg 684
Cdd:pfam01103 155 YKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKD-----LPFYERFYAggSNS-VRGFEYGGIGPRDEDGDA----- 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 685 ttlpdgtptgniggaeefdtlqlagrIGGNAKAVAGLEMIVPTPFLDEensSSVRTSFFVDAANVWDTEFNVDRYqslqp 764
Cdd:pfam01103 224 --------------------------LGGNSYVVASLELRFPLPFVPK---QSVRGVLFFDAGNVWNTGSTDPGS----- 269

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1356008254 765 nerarLDDYSDPGRFRVSTGLSIQWISPMGPMLISFAYPLQEEEDDDTKTISFNI 819
Cdd:pfam01103 270 -----SRGARSKAGIRASVGVGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
TamA COG0729
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ...
 220-811 4.84e-46

Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440493 [Multi-domain]  Cd Length: 574  Bit Score: 173.93  E-value: 4.84e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 220 IEGDLEKIRSYYLDRGYLRFNIDstqVSVSPERESVYVTANVTEGEKYRVKGFD--FIGDLLGREEL--IRSVVPLKAGE 295
Cdd:COG0729    57 ARADPERIRAALRAEGYYSPTVT---IRLDGRDGPWTVTITVDPGPPVRIGKVDieLLGEAAQDPARrkLLAAWPLKPGD 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 296 LYNGSVVTASEEFIKSYLARFGYANA-VVRTIPEIDDETKEVQLVLSVDPGKRVYVRRIDISGNQSTADEVIRREMTQLE 374
Cdd:COG0729   134 PLRHGAYEAAKSALLDALRERGYPDArFTQSRAEVDPATNTADVTLTVDSGPRYRFGEITVEGLSRVPEDFLRRLAPFKP 213

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 375 GAWLSNQNLERSKLQIQRLPYMENVEFEVNPVPGVDDEVDVGFTVKEQSAGSFTAGLAYGSYYGLQFNIGISESNFLGSG 454
Cdd:COG0729   214 GEPYSPDKLLELQQRLQSTGYFSSVRVTPDEDPAPDGTVPVTVTLTERKRRRIGFGLGYSTDTGPRLSAGWEHRNLFGRG 293

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 455 NQVAFNINTSRGSESISLSYTDPYFTPDGVSQGSSIFYRNYDasafsLIDYKSKSYGIGTNIGFPVNAVNRLNFGVRWIE 534
Cdd:COG0729   294 HRLRLELELSQPEQSLSADYRIPPLFPLGQYLSLGAGLERED-----TDDYDSRSLTLGAGRTRRLSDGWTRSLGLRLLY 368

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 535 EelsdlaEYEQTRVLRETFLdpenpdagfeftkYELSAGWSRVTVNRGMFPTAGSRQSLNLSATTP--NSDLTYFKINYD 612
Cdd:COG0729   369 E------RFTDGDDDRTYTL-------------LSPGLSWTRDRRDDPLDPTRGYRLSLELGPGSKllGSDTSFLRLYAR 429

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 613 SRYYWPVSDdhRWVFSARAALgygnGYGETNGYDQVLPVQEFFRITEQELRGFDRNTIlpravvrSPQNipgttlPDGTP 692
Cdd:COG0729   430 GSWYRPLGE--RHRLAGRAEL----GAILGADFDDVPPSLRFFAGGDGSVRGYGYQSL-------GPRD------GDGDV 490

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 693 tgniggaeefdtlqlagrIGGNAKAVAGLEMIVPTpfldeenSSSVRTSFFVDAANVWdtefnvdryqslqpnerarlDD 772
Cdd:COG0729   491 ------------------IGGRSLAVGSLEYRYRV-------TENWGLAVFVDAGNAF--------------------ND 525

                         570       580       590
                  ....*....|....*....|....*....|....*....
gi 1356008254 773 YSDpGRFRVSTGLSIQWISPMGPMLISFAYPLQEEEDDD 811
Cdd:COG0729   526 FPF-SDLKVGAGLGLRWYSPVGPIRLDLAYPLNDRDDSS 563
FhaC COG2831
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular ...
 257-671 1.21e-22

Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442079 [Multi-domain]  Cd Length: 547  Bit Score: 102.72  E-value: 1.21e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 257 VTANVTEGEKYRVKGFDFIG-DLLGREELIRSVVPLKAGELYNGSVVTASEEFIKSYLARfGYANAVVrTIPEIDDETKE 335
Cdd:COG2831    54 AAPPAAEGPCFTIKRIRVEGnTVLPEEELQALLAPYLGRCLTLADLNALADAITNLYRDR-GYITSRA-YLPPQDLSDGV 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 336 VQLVlsVDPGKrvyVRRIDISGNQSTADEVIRREMTQLEGAWLSNQNLERSKLQIQRLPYMeNVEFEVNP--VPGvddEV 413
Cdd:COG2831   132 LRIQ--VVEGR---VGRIRVEGNSRLSRAYLRSALPLAEGKPLNLRDLEQGLLLLNRLPGV-QVTAELRPgtEPG---TS 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 414 DVGFTVKEQSAGSFTAGLA-YGSYY--GLQFNIGISESNFLGSGNQVAFNINTS---RGSESISLSYTDPYFTPDGVSQG 487
Cdd:COG2831   203 DLVVTVEEAKPFRGSLGLDnSGSPStgRYRLGASLSLDNLLGLGDQLSLSYSRSldgDGSRSYSLSYSVPLGYWGLTLGL 282

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 488 SSIFYRNYDASAFSLIDYKSKSYGIGTNIGFPV--NAVNRLNFGV----RWIEEELSDLAEYEQ---TRVLRetfldpen 558
Cdd:COG2831   283 SYSRYRSRVGGPFGTLDISGKSQTYGLRLSYPLirSRDQKLSLSLgldyKDSRNYLLGTEIEVQrrrLSVLR-------- 354

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 559 pdAGFEFTKYELSAGWS-RVTVNRGMfPTAGSRQSLNlsaTTPNSDLTYFKINYDSRYYWPVSDDHRWVFSARAALGygn 637
Cdd:COG2831   355 --LGLSYTRRLGGGVLSlSLSFSQGL-DWLGATPAPD---ASRGPDGRFTKLRLSASRVQPLPQDFSLLLRLDGQYS--- 425

                         410       420       430
                  ....*....|....*....|....*....|....*
gi 1356008254 638 gygetngyDQVLPVQEFFRITEQE-LRGFDRNTIL 671
Cdd:COG2831   426 --------SDPLLSSEQFSLGGRYsVRGYDEGELS 452
POTRA pfam07244
Surface antigen variable number repeat; This family is found primarily in bacterial surface ...
 268-345 4.62e-15

Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.


Pssm-ID: 462121 [Multi-domain]  Cd Length: 78  Bit Score: 70.83  E-value: 4.62e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1356008254 268 RVKGFDFIGDLLGREELIRSVVPLKAGELYNGSVVTASEEFIKSYLARFGYANAVVRTIPEIDDETKEVQLVLSVDPG 345
Cdd:pfam07244   1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
POTRA pfam07244
Surface antigen variable number repeat; This family is found primarily in bacterial surface ...
 178-264 4.31e-14

Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.


Pssm-ID: 462121 [Multi-domain]  Cd Length: 78  Bit Score: 68.14  E-value: 4.31e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254 178 IRQINIVGNELFPDEELLGLVesqqdlpwwKFMSSDRYQKQTIEGDLEKIRSYYLDRGYLRFNIdSTQVSVSPERESVYV 257
Cdd:pfam07244   2 IGDINFEGNKKTKDEELRRLL---------GLKEGDVYNREKLEEDKEALKDRYGRLGYFDASV-STNVEIDDEVNTVDL 71


                  ....*..
gi 1356008254 258 TANVTEG 264
Cdd:pfam07244  72 TFNVDEG 78
POTRA pfam07244
Surface antigen variable number repeat; This family is found primarily in bacterial surface ...
 94-173 7.64e-09

Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.


Pssm-ID: 462121 [Multi-domain]  Cd Length: 78  Bit Score: 53.11  E-value: 7.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356008254  94 TISAIEFEGNKDIKDEQLNESLnqqNIRTGEPLDRTVLDNVQKGLVEFFHSIGKYNAKLDLEI-IRLPRNRVRLKLNFDE 172
Cdd:pfam07244   1 KIGDINFEGNKKTKDEELRRLL---GLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVeIDDEVNTVDLTFNVDE 77


                  .
gi 1356008254 173 G 173
Cdd:pfam07244  78 G 78
POTRA pfam07244
Surface antigen variable number repeat; This family is found primarily in bacterial surface ...
 349-421 1.50e-08

Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.


Pssm-ID: 462121 [Multi-domain]  Cd Length: 78  Bit Score: 52.34  E-value: 1.50e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1356008254 349 YVRRIDISGNQSTADEVIRREMTQLEGAWLSNQNLERSKLQIQRLpYMEN--VEFEVNPVPGVDDE---VDVGFTVKE 421
Cdd:pfam07244   1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDKEALKDR-YGRLgyFDASVSTNVEIDDEvntVDLTFNVDE 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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