|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
8-617 |
0e+00 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 644.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 8 WKYLMVVLVITISFLYAAPNLFGedpalqvsgsrgtqvssdilvkaqqsltqagidvksaalendqllirfrntddqlrg 87
Cdd:PRK05812 1 WKYLLILLVLLIGLLYALPNLRG--------------------------------------------------------- 23
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 88 kdlvadalgdnyvtalNLAPSTPAWLEAIGAGPLKLGLDLRGGVHFLMEVDMDEALNRVQEQTVQDFRTELRQERLRYSG 167
Cdd:PRK05812 24 ----------------ALAPATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIRYGG 87
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 168 VLnrdggtlVMFRDEGTRDKAISHLRQknpdlvfttqdngdsfglLAVMSEQRLKEVKEYALQQNITIIRNRVNELGVAE 247
Cdd:PRK05812 88 VE-------ITFRDAEDRDKAIALLRK------------------LSSLTEAELKEITEEALEQAIEIIRNRVNELGVAE 142
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 248 PLVQRQGADRIVVQLPGIQDTARAKEILGATATLEFRLVderadaaaaaagrvppgselftdrsgravvlqkRVILTGEH 327
Cdd:PRK05812 143 PVIQRQGADRIVVELPGVQDTARAKEILGKTATLEFRLV---------------------------------PVILTGDD 189
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 328 IVDANSGMDEFSRPQVNISLDAPGGSRMADFTKDNVGRAMATVFteykpgdepgaDGKptlrkeqeVINVATIQSRL-GR 406
Cdd:PRK05812 190 ITDASASFDQQGQPVVNITLDSEGAKKFADITKANIGKRMAIVL-----------DGE--------VISAPVIQSAItGG 250
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 407 SFRITGIDSMAEAQNLALLLRAGALIAPIQIVEERTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYRKFGLVANLALL 486
Cdd:PRK05812 251 SAQITGNFTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALV 330
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 487 ANLVIIIGVMSMVpGATMTLPGIAGIVLTIGMSVDANVLIFERIREELRDGRSIQQAIHMGYEKAFGTITDANITTFITA 566
Cdd:PRK05812 331 ANLVLILAVLSLL-GATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAA 409
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1381974558 567 IILFAVGTGPIKGFAVTLMIGILASMFTAIVGTRALVNLLWG-GKRLKKLSI 617
Cdd:PRK05812 410 IILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLLYGrRKRLKKLSI 461
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
85-617 |
0e+00 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 558.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 85 LRGKDLVADALGDNYVTALNL-APSTPAWleaigagPLKLGLDLRGGVHFLMEVDMDEALNrvqeqtvqdfrtelrqerl 163
Cdd:COG0342 1 MKAKFLLWRLLLLLLVVALSLvAPNGPAK-------PIKLGLDLQGGVHLLLEVDTDAALD------------------- 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 164 rysgvlnrdggtlvmfrdegtrdkaishlrqknpdlvfttqDNGDSfgllavmseqrLKEVKEYALQQNITIIRNRVNEL 243
Cdd:COG0342 55 -----------------------------------------EDGDG-----------IREVTEEALDQAIEILRNRVNEL 82
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 244 GVAEPLVQRQGADRIVVQLPGIQDTARAKEILGATATLEFRLVDERADAAAAaagrVPPGSELFTDRSGRAVVLQKRVIL 323
Cdd:COG0342 83 GVSEPVIQRQGDDRIVVELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQAA----VPAGSELLPCRDGQPYLLLGPVVL 158
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 324 TGEHIVDANSGMD-EFSRPQVNISLDAPGGSRMADFTKDNVGRAMATVFteykpgdepgaDGkptlrkeqEVINVATIQS 402
Cdd:COG0342 159 TGDDLTDASAGFDqQTGQPVVSFTLDSEGAKKFADATRENVGKPLAIVL-----------DG--------EVISAPVIQE 219
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 403 RL-GRSFRITGIDSMAEAQNLALLLRAGALIAPIQIVEERTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYRKFGLVA 481
Cdd:COG0342 220 PItGGSAQITGSFTVEEAQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVA 299
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 482 NLALLANLVIIIGVMSMVpGATMTLPGIAGIVLTIGMSVDANVLIFERIREELRDGRSIQQAIHMGYEKAFGTITDANIT 561
Cdd:COG0342 300 NIALALNVVLLLGVLSLL-GATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVT 378
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1381974558 562 TFITAIILFAVGTGPIKGFAVTLMIGILASMFTAIVGTRALVNLLWGGKRLKKLSI 617
Cdd:COG0342 379 TLIAAVVLFVLGTGPVKGFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
123-603 |
1.52e-163 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 472.93 E-value: 1.52e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 123 LGLDLRGGVHFLMEVDMDEALNrvqeqtvqdfrtelrqerlrysgvlnrdggtlvmfrdegtrdkaishlrqknpdlvft 202
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAVV---------------------------------------------------------- 22
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 203 tqdngdsfgllAVMSEQRLKEVKEYALQQNITIIRNRVNELGVAEPLVQRQGADRIVVQLPGIQDTARAKEILGATATLE 282
Cdd:TIGR01129 23 -----------LKLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATLE 91
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 283 FRLV-DERADAAAAAAGRVPPGSELFTDRSGR--AVVLQKRVILTGEHIVDANSGMDEFS-RPQVNISLDAPGGSRMADF 358
Cdd:TIGR01129 92 FRLVdDESTSPDDALAGNVPAGSELLDSRSGDpkYYLLKKSPVLTGDHITDATSSVDQRSgQPVVSFSLDSEGARIFGDF 171
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 359 TKDNVGRAMATVFteykpgdepgaDGKptlrkeqeVINVATIQSRL-GRSFRITGIDSMAEAQNLALLLRAGALIAPIQI 437
Cdd:TIGR01129 172 TQANIGKRLAIVL-----------DNK--------VVSAPTIQEAItGGSGQITGNFTAEEANDLALVLRSGALPAPLQI 232
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 438 VEERTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYRKFGLVANLALLANLVIIIGVMSMVpGATMTLPGIAGIVLTIG 517
Cdd:TIGR01129 233 LEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAF-GATLTLPGIAGLILTIG 311
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 518 MSVDANVLIFERIREELRDGRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTAIV 597
Cdd:TIGR01129 312 MAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALV 391
|
....*.
gi 1381974558 598 GTRALV 603
Cdd:TIGR01129 392 FTRLLL 397
|
|
| SecD-TM1 |
pfam13721 |
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane ... |
2-103 |
6.55e-48 |
|
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane region of the SecD export protein. SecD is directly involved in protein secretion and important for the release of proteins that have been translocated across the cytoplasmic membrane.
Pssm-ID: 463968 [Multi-domain] Cd Length: 103 Bit Score: 162.68 E-value: 6.55e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 2 LNRYPLWKYLMVVLVITISFLYAAPNLFGEDPALQVSGSRGT-QVSSDILVKAQQSLTQAGIDVKSAALENDQLLIRFRN 80
Cdd:pfam13721 1 MNRYPLWKYLLILVVLLIGLLYALPNLYGEDPAVQISAARGGaKVDEATLDRVEQALKAAGIPVKSIELEGDSLLVRFDS 80
|
90 100
....*....|....*....|...
gi 1381974558 81 TDDQLRGKDLVADALGDNYVTAL 103
Cdd:pfam13721 81 TDDQLKAKDVLQRALGDDYVVAL 103
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
435-596 |
2.36e-21 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 91.90 E-value: 2.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 435 IQIVEERTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYR-KFGLVANLALLANLVIIIGVMSMVpGATMTLPGIAGIV 513
Cdd:pfam02355 13 AEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEwRFALGAIIALAHDVIITVGVFSLF-GIEVDLATVAALL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 514 LTIGMSVDANVLIFERIREELRDGR----------SIQQAIHMgyekafgTITdANITTFITAIILFAVGTGPIKGFAVT 583
Cdd:pfam02355 92 TIIGYSVNDTVVVFDRVRENLRKKTratlneimnlSINQTLTR-------TIN-TSLTTLLVVVALFVFGGGSLKDFSLA 163
|
170
....*....|...
gi 1381974558 584 LMIGILASMFTAI 596
Cdd:pfam02355 164 LLVGVIVGTYSSI 176
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
456-614 |
9.54e-16 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 81.36 E-value: 9.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 456 LMAMIYGL---LAVVLFMSIYYRKFGLVANLALLANLVIIIGVMSMVpGATMTLPGIAGIVLTIGMSVDANVLIFERIRE 532
Cdd:NF037998 445 IASIIFLLilaIAIMIYLLFAYRLLGLFAIIIALTSISLTLYSPTWF-GLAIGPESITAIFIAIGLVLESCSLLFEAFKK 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 533 EL-RDGRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTAIVGTRALVNLLWGGKR 611
Cdd:NF037998 524 HLyKNKRSIEESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMIWLTIKLQW 603
|
...
gi 1381974558 612 LKK 614
Cdd:NF037998 604 FKK 606
|
|
| PRK10629 |
PRK10629 |
EnvZ/OmpR regulon moderator MzrA; |
1-124 |
7.08e-08 |
|
EnvZ/OmpR regulon moderator MzrA;
Pssm-ID: 236728 Cd Length: 127 Bit Score: 51.54 E-value: 7.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 1 MLNRYPLWKYLMVVLVITIsfLYAAPNLFGEDPALQVSGSR-GTQVSSDILVkaQQSLTQAGIDVKSAALENDQLLIRFR 79
Cdd:PRK10629 6 MSLRQLAWLGAVLLLLAAL--LLAWSALRQQESTLAIRAVHqGASLPDGFYV--YQHLDANGIHIKSITPENDSLLIRFD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1381974558 80 NTDDQLRGKDLVADALGDNYVTAL-NLAPSTPAWLEAIGAGPLKLG 124
Cdd:PRK10629 82 SPEQSAAAKEVLDRTLPHGYIIAQqDDNSQAMQWLTRLRDNSHRLG 127
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
8-617 |
0e+00 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 644.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 8 WKYLMVVLVITISFLYAAPNLFGedpalqvsgsrgtqvssdilvkaqqsltqagidvksaalendqllirfrntddqlrg 87
Cdd:PRK05812 1 WKYLLILLVLLIGLLYALPNLRG--------------------------------------------------------- 23
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 88 kdlvadalgdnyvtalNLAPSTPAWLEAIGAGPLKLGLDLRGGVHFLMEVDMDEALNRVQEQTVQDFRTELRQERLRYSG 167
Cdd:PRK05812 24 ----------------ALAPATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIRYGG 87
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 168 VLnrdggtlVMFRDEGTRDKAISHLRQknpdlvfttqdngdsfglLAVMSEQRLKEVKEYALQQNITIIRNRVNELGVAE 247
Cdd:PRK05812 88 VE-------ITFRDAEDRDKAIALLRK------------------LSSLTEAELKEITEEALEQAIEIIRNRVNELGVAE 142
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 248 PLVQRQGADRIVVQLPGIQDTARAKEILGATATLEFRLVderadaaaaaagrvppgselftdrsgravvlqkRVILTGEH 327
Cdd:PRK05812 143 PVIQRQGADRIVVELPGVQDTARAKEILGKTATLEFRLV---------------------------------PVILTGDD 189
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 328 IVDANSGMDEFSRPQVNISLDAPGGSRMADFTKDNVGRAMATVFteykpgdepgaDGKptlrkeqeVINVATIQSRL-GR 406
Cdd:PRK05812 190 ITDASASFDQQGQPVVNITLDSEGAKKFADITKANIGKRMAIVL-----------DGE--------VISAPVIQSAItGG 250
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 407 SFRITGIDSMAEAQNLALLLRAGALIAPIQIVEERTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYRKFGLVANLALL 486
Cdd:PRK05812 251 SAQITGNFTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALV 330
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 487 ANLVIIIGVMSMVpGATMTLPGIAGIVLTIGMSVDANVLIFERIREELRDGRSIQQAIHMGYEKAFGTITDANITTFITA 566
Cdd:PRK05812 331 ANLVLILAVLSLL-GATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAA 409
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1381974558 567 IILFAVGTGPIKGFAVTLMIGILASMFTAIVGTRALVNLLWG-GKRLKKLSI 617
Cdd:PRK05812 410 IILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLLYGrRKRLKKLSI 461
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
2-608 |
0e+00 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 617.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 2 LNRYPLWKYLMVVLVITISFLYAAPNLFGEDPALQVSGSRGTQVSsdiLVKAQQSLTQAGIDVKSAALENDQLLIRFRNT 81
Cdd:PRK12933 10 LNHYSAWKYVVLIVTIIILLLSAIPTWYGEDAAVQVSAKAGLLLN---VVELRQLLQAQGINVKRIDQKEGKTLIVLDDD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 82 DDQLRGKDLVADALGDNYVTALNLAPSTPAWLEAIGAGPLKLGLDLRGGVHFLMEVDMDEALNRVQEQTVQDFRTELRQE 161
Cdd:PRK12933 87 SQQSQAKTLLSSMVKEPKELTLSLASAAPKWLQNMGFSPIKLGLDLRGGVQFLLDVDVDPVYQEQRDALVDSVRQFLREQ 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 162 RLRYSGVLNRDGGTL-VMFRDEGTRDKAISHLRQKNPDLVFTtqdNGDSFGLLAVMSEQRLKEVKEYALQQNITIIRNRV 240
Cdd:PRK12933 167 RIRGVSVRLDDSDQLaVTTPDNDARSAVRQFIQQNYPGWQVT---NSDDRGLQLKLSQQEKTKFRNLTVQQNLQIMRSRI 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 241 NELGVAEPLVQRQGADRIVVQLPGIQDTARAKEILGATATLEFRLVDEradaaaaaAGRVppGSELFTDRSGRAVVLQKR 320
Cdd:PRK12933 244 EELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFYEVKE--------SGSV--NAKVLKDKNGRPVYVARR 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 321 VILTGEHIVDANSGMDEFSRPQVNISLDAPGGSRMADFTKDNVGRAMATVFTEYKPGDEpgadGKptLRKEQEVINVATI 400
Cdd:PRK12933 314 PVLGGEHIVDARASLGEMGMAEVNISLDRAGGKKMSDFSRDNIGKPMATSYSEYSRDEQ----GK--TKQSEEVISVATI 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 401 QSRLGRSFRITGIDSMAEAQNLALLLRAGALIAPIQIVEERTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYRKFGLV 480
Cdd:PRK12933 388 QSQLGDRFRITGAGSYQEAQQLALLLRAGSLTAPVTIVEERTIGPSLGAENIENGFAALALGMGITLLFMALWYRRLGWV 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 481 ANLALLANLVIIIGVMSMVPGATMTLPGIAGIVLTIGMSVDANVLIFERIREELRDGRSIQQAIHMGYEKAFGTITDANI 560
Cdd:PRK12933 468 ANVALIANMVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANF 547
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1381974558 561 TTFITAIILFAVGTGPIKGFAVTLMIGILASMFTAIVGTRALVNLLWG 608
Cdd:PRK12933 548 TTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYG 595
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
85-617 |
0e+00 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 558.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 85 LRGKDLVADALGDNYVTALNL-APSTPAWleaigagPLKLGLDLRGGVHFLMEVDMDEALNrvqeqtvqdfrtelrqerl 163
Cdd:COG0342 1 MKAKFLLWRLLLLLLVVALSLvAPNGPAK-------PIKLGLDLQGGVHLLLEVDTDAALD------------------- 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 164 rysgvlnrdggtlvmfrdegtrdkaishlrqknpdlvfttqDNGDSfgllavmseqrLKEVKEYALQQNITIIRNRVNEL 243
Cdd:COG0342 55 -----------------------------------------EDGDG-----------IREVTEEALDQAIEILRNRVNEL 82
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 244 GVAEPLVQRQGADRIVVQLPGIQDTARAKEILGATATLEFRLVDERADAAAAaagrVPPGSELFTDRSGRAVVLQKRVIL 323
Cdd:COG0342 83 GVSEPVIQRQGDDRIVVELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQAA----VPAGSELLPCRDGQPYLLLGPVVL 158
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 324 TGEHIVDANSGMD-EFSRPQVNISLDAPGGSRMADFTKDNVGRAMATVFteykpgdepgaDGkptlrkeqEVINVATIQS 402
Cdd:COG0342 159 TGDDLTDASAGFDqQTGQPVVSFTLDSEGAKKFADATRENVGKPLAIVL-----------DG--------EVISAPVIQE 219
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 403 RL-GRSFRITGIDSMAEAQNLALLLRAGALIAPIQIVEERTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYRKFGLVA 481
Cdd:COG0342 220 PItGGSAQITGSFTVEEAQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVA 299
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 482 NLALLANLVIIIGVMSMVpGATMTLPGIAGIVLTIGMSVDANVLIFERIREELRDGRSIQQAIHMGYEKAFGTITDANIT 561
Cdd:COG0342 300 NIALALNVVLLLGVLSLL-GATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVT 378
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1381974558 562 TFITAIILFAVGTGPIKGFAVTLMIGILASMFTAIVGTRALVNLLWGGKRLKKLSI 617
Cdd:COG0342 379 TLIAAVVLFVLGTGPVKGFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
123-603 |
1.52e-163 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 472.93 E-value: 1.52e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 123 LGLDLRGGVHFLMEVDMDEALNrvqeqtvqdfrtelrqerlrysgvlnrdggtlvmfrdegtrdkaishlrqknpdlvft 202
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAVV---------------------------------------------------------- 22
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 203 tqdngdsfgllAVMSEQRLKEVKEYALQQNITIIRNRVNELGVAEPLVQRQGADRIVVQLPGIQDTARAKEILGATATLE 282
Cdd:TIGR01129 23 -----------LKLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATLE 91
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 283 FRLV-DERADAAAAAAGRVPPGSELFTDRSGR--AVVLQKRVILTGEHIVDANSGMDEFS-RPQVNISLDAPGGSRMADF 358
Cdd:TIGR01129 92 FRLVdDESTSPDDALAGNVPAGSELLDSRSGDpkYYLLKKSPVLTGDHITDATSSVDQRSgQPVVSFSLDSEGARIFGDF 171
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 359 TKDNVGRAMATVFteykpgdepgaDGKptlrkeqeVINVATIQSRL-GRSFRITGIDSMAEAQNLALLLRAGALIAPIQI 437
Cdd:TIGR01129 172 TQANIGKRLAIVL-----------DNK--------VVSAPTIQEAItGGSGQITGNFTAEEANDLALVLRSGALPAPLQI 232
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 438 VEERTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYRKFGLVANLALLANLVIIIGVMSMVpGATMTLPGIAGIVLTIG 517
Cdd:TIGR01129 233 LEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAF-GATLTLPGIAGLILTIG 311
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 518 MSVDANVLIFERIREELRDGRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTAIV 597
Cdd:TIGR01129 312 MAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALV 391
|
....*.
gi 1381974558 598 GTRALV 603
Cdd:TIGR01129 392 FTRLLL 397
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
212-615 |
1.18e-123 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 383.04 E-value: 1.18e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 212 LLAVMSEQRLKEVKEYALQQNITIIRNRVNELGVAEPLVQRQGADRIVVQLPGIQDTARAKEILGATATLEFRLVDERAD 291
Cdd:PRK13024 44 LLEVSPADKGKKADREALDSTVEVLRNRIDGLGVSEPNIQREGNNRIRVELPGVQDPERARELLGSTAKLTFRDVTDPPP 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 292 AAaaaagrvPPGSELFTDRSGRAVVLqKRVILTGEHIVDANSGMDEFS--RPQVNISLDAPGGSRMADFTKDNV-----G 364
Cdd:PRK13024 124 PG-------VGGPVVGPDEGKDTAVL-NPVLLSGDDLTDAGAKFDQDQtnRPSVSLKLKSEGAKKWAKVTEKNSkkgppN 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 365 RAMATVfteykpgdepgADGKptlrkeqeVINVATIQS-RLGRSFRITGIDSMAEAQNLALLLRAGALIAPIQIVEERTI 443
Cdd:PRK13024 196 NRIAIV-----------LDPK--------VISAPTVNQpINGGSVQISGNFTVEEAKDLANLLNAGALPAPLKIIESRSV 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 444 GPSLGQQNVENGLMAMIYGLLAVVLFMSIYYRKFGLVANLALLANLVIIIGVMSMVpGATMTLPGIAGIVLTIGMSVDAN 523
Cdd:PRK13024 257 GPTLGQDAIDAGIIAGIIGFALIFLFMLVYYGLPGLIANIALLLYIFLTLGALSSL-GAVLTLPGIAGLVLGIGMAVDAN 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 524 VLIFERIREELRDGRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTAIVGTRALV 603
Cdd:PRK13024 336 VLIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLLL 415
|
410
....*....|..
gi 1381974558 604 NlLWGGKRLKKL 615
Cdd:PRK13024 416 E-LLVKRGDKKP 426
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
108-603 |
8.74e-119 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 372.90 E-value: 8.74e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 108 STPAWLEAigaGPLKLGLDLRGGVHFLMEVDMDEALNRVQEQTVQDFRTELRQERLRYSGVLNRDGGTLVMFRDEGTRDK 187
Cdd:PRK14726 35 SLPSWLPH---RQVTLGLDLQGGSHIVLKVERSDIVKDRLEETVANIRNALRDAGIRYTGLTGNGQTVQVRITDPAQTQA 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 188 AISHLRQ----KNPDLVFT------TQDNGDSFGLLAVMSEQRLKEVKEYALQQNITIIRNRVNELGVAEPLVQRQGADR 257
Cdd:PRK14726 112 AVDALKPltapVSAGGLGGssiqelTLQEGGEGQLRLQLTDAGIDYRVSSALTQSIEVVRRRVAELGTTEPLIRRQGDDR 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 258 IVVQLPGIQDTARAKEILGATATLEFRLVDERADAAAAAAGRVPPGSELFTDRSGRAV--VLQKRVILTGEHIVDANSGM 335
Cdd:PRK14726 192 IVVQVPGLVDPQRLKNLLNQPAKLSFRLVDSSMPAQEALNGRPPATSEVLYSLDDPPVpyLVERRAFVSGENLVDAQPVF 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 336 D-EFSRPQVNISLDAPGGSRMADFTKDNVGRAMATVFteykpgdepgaDGkptlrkeqEVINVATIQSR-LGRSFRITGI 413
Cdd:PRK14726 272 DpQTNEPVVTFRLDAEGTQRFAQATQQNVGKHFAIVL-----------DG--------QVISAPVIDEAiTGGEGRISGN 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 414 DSMAEAQNLALLLRAGALIAPIQIVEERTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYRKFGLVANLALLANLVIII 493
Cdd:PRK14726 333 FSEQGANDLAVLLRAGALPATLTVVEERTVGPGLGADSIAAGLVAGLIAAILVAALMIGFYGFLGVIAVIALIVNVVLII 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 494 GVMSmVPGATMTLPGIAGIVLTIGMSVDANVLIFERIREELRDGRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVG 573
Cdd:PRK14726 413 AVLS-LLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLG 491
|
490 500 510
....*....|....*....|....*....|
gi 1381974558 574 TGPIKGFAVTLMIGILASMFTAIVGTRALV 603
Cdd:PRK14726 492 SGAVRGFAVTLAVGILTTVFTAFTLTRSLV 521
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
441-596 |
8.07e-58 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 192.47 E-value: 8.07e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 441 RTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYRKFGLVANLALLANLVIII-GVMSMVpGATMTLPGIAGIVLTIGMS 519
Cdd:TIGR00916 35 GTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILIlGVLSLF-GATLTLPGIAGLLTIIGYS 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1381974558 520 VDANVLIFERIREELRD--GRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTAI 596
Cdd:TIGR00916 114 VDDTVVIFDRIREELRKykGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
229-603 |
7.61e-56 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 201.77 E-value: 7.61e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 229 LQQNITIIRNRVNELGVAEPLVQRQGADRIVVQLPGIQDTARAKEILGATATLEFRLVDERADAAAAAAGRVPPGSELFT 308
Cdd:PRK13023 69 LETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADSEIVY 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 309 --DRSGRAVVLQKRVILTGEHIVDANSGM-DEFSRPQVNISLDAPGGSRMADFTKDNVGRAMATVFteykpgdepgadgk 385
Cdd:PRK13023 149 sfDDPPVGYLLKKTPILTGHDITDAKASIsADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVV-------------- 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 386 ptlrkEQEVINVATIQSRLGRS-FRITGIDSMAEAQNLALLLRAGALIAPIQIVEERTIGPSLGQQNVENGLMAMIYGLL 464
Cdd:PRK13023 215 -----DNQVVSAPTVSGPLDTSeLQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAAL 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 465 AVVLFMSIYYRKFGLVANLALLANLVIIIGVMSMVpGATMTLPGIAGIVLTIGMSVDANVLIFERIREELRDGRSIQQAI 544
Cdd:PRK13023 290 VVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI-GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAM 368
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1381974558 545 HMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTAIVGTRALV 603
Cdd:PRK13023 369 ESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLI 427
|
|
| SecD-TM1 |
pfam13721 |
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane ... |
2-103 |
6.55e-48 |
|
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane region of the SecD export protein. SecD is directly involved in protein secretion and important for the release of proteins that have been translocated across the cytoplasmic membrane.
Pssm-ID: 463968 [Multi-domain] Cd Length: 103 Bit Score: 162.68 E-value: 6.55e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 2 LNRYPLWKYLMVVLVITISFLYAAPNLFGEDPALQVSGSRGT-QVSSDILVKAQQSLTQAGIDVKSAALENDQLLIRFRN 80
Cdd:pfam13721 1 MNRYPLWKYLLILVVLLIGLLYALPNLYGEDPAVQISAARGGaKVDEATLDRVEQALKAAGIPVKSIELEGDSLLVRFDS 80
|
90 100
....*....|....*....|...
gi 1381974558 81 TDDQLRGKDLVADALGDNYVTAL 103
Cdd:pfam13721 81 TDDQLKAKDVLQRALGDDYVVAL 103
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
436-610 |
1.21e-47 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 180.44 E-value: 1.21e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 436 QIVEERTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYRKFGLVANLALLANLVIIIGVMSMVpGATMTLPGIAGIVLT 515
Cdd:PRK12911 892 EVLSEEVISPELGKSQRTQGIISVCLGLAVLIVLMSVYYRFGGVIASGAVLLNLLLIWAALQYL-DAPLTLSGLAGIVLA 970
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 516 IGMSVDANVLIFERIREELRDGRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTA 595
Cdd:PRK12911 971 MGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTA 1050
|
170
....*....|....*
gi 1381974558 596 IVGTRALVnLLWGGK 610
Cdd:PRK12911 1051 LFMTKFFF-MIWMNK 1064
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
434-595 |
2.26e-23 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 100.51 E-value: 2.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 434 PIQIVEERTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYR-KFGLVANLALLANLVIIIGVMSMVpGATMTLPGIAGI 512
Cdd:COG0341 114 DVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEwRFAVGAVVALLHDVLITLGIFSLF-GLEFDLTFIAAL 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 513 vLTI-GMSVDANVLIFERIREELRDGRSiqqaihmgyeKAFGTITDANI------------TTFITAIILFAVGTGPIKG 579
Cdd:COG0341 193 -LTIiGYSLNDTVVVFDRIRENLRKYRK----------MTLAEIINLSInqtlsrtintslTTLLVVLALLFFGGETLRD 261
|
170 180
....*....|....*....|
gi 1381974558 580 FAVTLMIGILA----SMFTA 595
Cdd:COG0341 262 FALALLIGIIVgtysSIFIA 281
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
222-589 |
1.17e-22 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 100.72 E-value: 1.17e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 222 KEVKEYALQQNITIIRNRVNELGVAEPLVQRQGADRIVVQLPGIqDTARAKEILGATATLEFRLVderadaaaaaagrvp 301
Cdd:PRK08343 58 GPVTQETMDLVVEILESRLNALGLKDIKVYPVGDQYIVVEVPGV-DADTAKEIIEKQGVFEARIQ--------------- 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 302 pgselFTDRSGRAVvlqkrviLTGEHI--VDANSGMDEFSRPQVNISLDAPGGSRMAD------FTKDNVGRAMATVFTE 373
Cdd:PRK08343 122 -----TPGNNNETV-------LTGDDIesVGSPSQDPSGGAWGVPFTLSEDGAEKFAEvakgkgATDDPSGHPLDMYLDG 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 374 ---YKPGDEPG-ADGKPTlrkEQEVINVAtiqsrlgrsFRITGIDSMAEAQNLALLLRAGALIAPIQIVEERTIGPSLGQ 449
Cdd:PRK08343 190 eliYAAPLSPDlASGLAS---GPVVITVG---------STGTTEEAKEEAKELYIHLRSGALPVKLDIEGSGSVSPSLGE 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 450 QNVENGLMAMIYGLLAVVLFMSIYYRKFGLVANLAL--LANLVIIIGVMSMVpGATMTLPGIAGIVLTIGMSVDANVLIF 527
Cdd:PRK08343 258 QFKKGSLIAGLLALLAVALVVFLRYREPRIALPMVItsLSEVIIILGFAALI-GWQLDLASIAGIIAVIGTGVDDLIIIT 336
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1381974558 528 ERI--REELRDGRSIQQAIhmgyEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGIL 589
Cdd:PRK08343 337 DEVlhEGKVPSRKVFLSRI----KRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILGVL 396
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
435-596 |
2.36e-21 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 91.90 E-value: 2.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 435 IQIVEERTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYR-KFGLVANLALLANLVIIIGVMSMVpGATMTLPGIAGIV 513
Cdd:pfam02355 13 AEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEwRFALGAIIALAHDVIITVGVFSLF-GIEVDLATVAALL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 514 LTIGMSVDANVLIFERIREELRDGR----------SIQQAIHMgyekafgTITdANITTFITAIILFAVGTGPIKGFAVT 583
Cdd:pfam02355 92 TIIGYSVNDTVVVFDRVRENLRKKTratlneimnlSINQTLTR-------TIN-TSLTTLLVVVALFVFGGGSLKDFSLA 163
|
170
....*....|...
gi 1381974558 584 LMIGILASMFTAI 596
Cdd:pfam02355 164 LLVGVIVGTYSSI 176
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
435-596 |
2.70e-18 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 84.63 E-value: 2.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 435 IQIVEERTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYY-RKFGLVANLALLANLVIIIGVMSMVpGATMTLPGIAGIV 513
Cdd:TIGR00966 80 AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFeWRFALGAIVALVHDVIITVGVYSLF-GIEVNLTTVAALL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 514 LTIGMSVDANVLIFERIREELR--DGRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILAS 591
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLRkyTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVG 238
|
....*
gi 1381974558 592 MFTAI 596
Cdd:TIGR00966 239 TYSSI 243
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
434-614 |
5.87e-18 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 87.98 E-value: 5.87e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 434 PIQIVEERTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYR-KFGLVANLALLANLVIIIGVMSmVPGATMTLPGIAGI 512
Cdd:PRK13024 558 GGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEwTFSLGAILALLHDVLIVIGFFS-LFRLEVDLTFIAAI 636
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 513 VLTIGMSVDANVLIFERIREELR--DGRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILA 590
Cdd:PRK13024 637 LTIIGYSINDTVVVFDRIRENLRlyKKKDLREIVNKSINQTLSRTINTSLTTLLVLLALLIFGGSSLRNFSLALLVGLIV 716
|
170 180
....*....|....*....|....*
gi 1381974558 591 SMFTAI-VGTRALVnlLWGGKRLKK 614
Cdd:PRK13024 717 GTYSSIfIAAPLWL--DLEKRRLKK 739
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
456-614 |
9.54e-16 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 81.36 E-value: 9.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 456 LMAMIYGL---LAVVLFMSIYYRKFGLVANLALLANLVIIIGVMSMVpGATMTLPGIAGIVLTIGMSVDANVLIFERIRE 532
Cdd:NF037998 445 IASIIFLLilaIAIMIYLLFAYRLLGLFAIIIALTSISLTLYSPTWF-GLAIGPESITAIFIAIGLVLESCSLLFEAFKK 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 533 EL-RDGRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTAIVGTRALVNLLWGGKR 611
Cdd:NF037998 524 HLyKNKRSIEESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMIWLTIKLQW 603
|
...
gi 1381974558 612 LKK 614
Cdd:NF037998 604 FKK 606
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
435-599 |
1.39e-15 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 77.59 E-value: 1.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 435 IQIVEERTIGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYR-KFGLVANLALLANLVIIIGVMSMVPgATMTLPGIAGIV 513
Cdd:PRK13021 108 VQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEwRLASGALFALVHDVIFVLAFFALTQ-MEFNLTVLAAVL 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 514 LTIGMSVDANVLIFERIREELR--DGRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILAS 591
Cdd:PRK13021 187 AILGYSLNDSIIIADRIRELLIakPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTG 266
|
....*....
gi 1381974558 592 MFTAI-VGT 599
Cdd:PRK13021 267 TFSSIsVGT 275
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
447-614 |
1.47e-14 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 77.21 E-value: 1.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 447 LGQQNVENGLMAMIYGLLAVVLFMSIYYRKFGLVAnLALLANLVIII---GVMSM--VPGATMTLPGIAgivLTIGMSVD 521
Cdd:COG1033 599 INESVIESQIRSLLLALLLIFLLLLLAFRSLRLGL-ISLIPNLLPILltfGLMGLlgIPLNIATAVVAS---IALGIGVD 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 522 ANVLIFERIREELRDGRSIQQAIHmgyeKAFGTITDANITTFITAIILFAVGT----GPIKGFAVTLMIGILASMFTAIV 597
Cdd:COG1033 675 YTIHFLSRYREERRKGGDLEEAIR----RALRTTGKAILFTSLTLAAGFGVLLfssfPPLADFGLLLALGLLVALLAALL 750
|
170
....*....|....*..
gi 1381974558 598 GTRALVNLLWGGKRLKK 614
Cdd:COG1033 751 LLPALLLLLDPRIAKKR 767
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
357-594 |
5.10e-12 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 66.88 E-value: 5.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 357 DFTkdnvGRAMATVFTEykpgDEPGADGKPTLRKEQEVINVATIQSRLGRSFRITGIDSMaEAQNLALLLRAGALIAPIQ 436
Cdd:PRK08578 47 DFT----GGTEITIQTN----DASPDELESALSGEPGVDVRKGSGNGYIITFGSGDDTDV-DKLADAVKEFFNVDSISEL 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 437 IVEERTIGPSLGQQNVENGLMAMIYGLL--AVVLFmsIYYRKF--GLVANLALLANLVIIIGVMSMVpGATMTLPGIAGI 512
Cdd:PRK08578 118 NYSEKQIGPTFGSQFQEQALKAVGFAFIgmAVVVF--LIFRTPvpSLAVILSAFSDIIIALALMNLF-GIELSLATVAAL 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 513 VLTIGMSVDANVLIFERIreeLRDGRSIQQAIHmgyeKAFGTITDANITTFITAIILFAVGTGP----IKGFAVTLMIGI 588
Cdd:PRK08578 195 LMLIGYSVDSDILLTTRV---LKRRGTFDESIK----RAMRTGITMTLTTIAAMAVLYIVSTIPqaevLANIAAVLIFGL 267
|
....*.
gi 1381974558 589 LASMFT 594
Cdd:PRK08578 268 LADLMN 273
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
459-614 |
6.49e-11 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 65.27 E-value: 6.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 459 MIYGLLAVVLFMSIYYRKF--GLVANLALLANLVIIIGVMSMVpGATMTLPGIAGIVLTIGMSVDANVLIFERIREELRD 536
Cdd:COG1033 224 FPLALLLILLLLFLFFRSLrgVLLPLLVVLLAVIWTLGLMGLL-GIPLSPLTILVPPLLLAIGIDYGIHLLNRYREERRK 302
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1381974558 537 GRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTAIVGTRALvnLLWGGKRLKK 614
Cdd:COG1033 303 GLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLTSLTLLPAL--LSLLPRPKPK 378
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
443-596 |
2.55e-10 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 63.48 E-value: 2.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 443 IGPSLGQQNVENGLMAMIYGLLAVVLFMSIYYR-KFGLVANLALLANLVIIIGvMSMVPGATMTLPGIAGIVLTIGMSVD 521
Cdd:PRK13023 568 VGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRwQLALGAVLSTLHDVVILSG-MFIVFRMEFNLWSVAAILTIIGYSLN 646
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1381974558 522 ANVLIFERIREELRDGRS--IQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTAI 596
Cdd:PRK13023 647 DTVVIYDRVRENLRRYKSapLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSI 723
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
449-605 |
4.61e-08 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 56.38 E-value: 4.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 449 QQNVENGLMAMIYGLLAVVLFMSIYYRKFGLVANL-ALLANLVIIIGVMSMVpGATMTLPGIAGIVLTIGMSVDANVLIF 527
Cdd:TIGR00921 564 LVNEGMRRMTIAGAILVLMILLAVFRNPIKAVFPLiAIGSGILWAIGLMGLR-GIPSFLAMATTISIILGLGMDYSIHLA 642
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1381974558 528 ERIREElRDGRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTAIVGTRALVNL 605
Cdd:TIGR00921 643 ERYFEE-RKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLTAALVVFPALLVL 719
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
447-617 |
6.92e-08 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 55.54 E-value: 6.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 447 LGQQNVENGLMAMIYGLLAVVLFMSIYYRkfGLVAnlALLANLVIIIGVMSMVP-----GATMTLPGIAGIVLT---IGM 518
Cdd:COG2409 163 LNEAFEEDLGRAELITLPVALVVLLLVFR--SLVA--ALLPLLTAGLAVGVALGllallAAFTDVSSFAPNLLTmlgLGV 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 519 SVDANVLIFERIREELRDGRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTAIVG 598
Cdd:COG2409 239 GIDYALFLVSRYREELRAGEDREEAVARAVATAGRAVLFSGLTVAIALLGLLLAGLPFLRSMGPAAAIGVAVAVLAALTL 318
|
170
....*....|....*....
gi 1381974558 599 TRALvnLLWGGKRLKKLSI 617
Cdd:COG2409 319 LPAL--LALLGRRVFWPRR 335
|
|
| PRK10629 |
PRK10629 |
EnvZ/OmpR regulon moderator MzrA; |
1-124 |
7.08e-08 |
|
EnvZ/OmpR regulon moderator MzrA;
Pssm-ID: 236728 Cd Length: 127 Bit Score: 51.54 E-value: 7.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 1 MLNRYPLWKYLMVVLVITIsfLYAAPNLFGEDPALQVSGSR-GTQVSSDILVkaQQSLTQAGIDVKSAALENDQLLIRFR 79
Cdd:PRK10629 6 MSLRQLAWLGAVLLLLAAL--LLAWSALRQQESTLAIRAVHqGASLPDGFYV--YQHLDANGIHIKSITPENDSLLIRFD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1381974558 80 NTDDQLRGKDLVADALGDNYVTAL-NLAPSTPAWLEAIGAGPLKLG 124
Cdd:PRK10629 82 SPEQSAAAKEVLDRTLPHGYIIAQqDDNSQAMQWLTRLRDNSHRLG 127
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
440-614 |
8.57e-08 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 55.23 E-value: 8.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 440 ERTIGPSLGQqnvengLMAMIYGLLAVVLFMSIYYRKFGLVANLALLANLVIIIGVMSMVpGATMTLPGIAGIVLTIGMS 519
Cdd:TIGR00921 188 EREFGKDMGT------TMAISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGIMGWL-GIPLYATTLLAVPMLIGVG 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 520 VDANVLIFERIREELRDGRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIG-ILASMFTAIVG 598
Cdd:TIGR00921 261 IDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGlITAYLLTLLVL 340
|
170
....*....|....*.
gi 1381974558 599 TRALVNLLWGGKRLKK 614
Cdd:TIGR00921 341 PALLQSIDIGREKVKK 356
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
443-596 |
1.47e-06 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 51.26 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 443 IGPSLGQQNVENGLMAMIYGLLAVVLFMSIYY-RKFGLVANLALLANLVIIIGVMsMVPGATMTLPGIAGIVLTIGMSVD 521
Cdd:PRK14726 662 VGPAVSGELTMAATLGVLAALAAILIYIWIRFeWQFAVGAIIATLHDVILTLGLF-VLTGIEFNLTSIAAILTIVGYSLN 740
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1381974558 522 ANVLIFERIREELRDGRS--IQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTAI 596
Cdd:PRK14726 741 DTVVVYDRVRENLRRYKKmpLPILIDASINQTLSRTVLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSI 817
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
456-606 |
3.68e-06 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 49.21 E-value: 3.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 456 LMAMIYG--LLAVVLFMSIYyrkFGLVANLALlanlVIIIGVMSMVPGATMTLPgIAGIVLtIGMSVDANVLIFERIREE 533
Cdd:pfam03176 158 ILLIVYRsvVAALLPLLTVG---LSLGAAQGL----VAILAHILGIGLSTFALN-LLVVLL-IAVGTDYALFLVSRYREE 228
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1381974558 534 LRDGRSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTAIVGTRALVNLL 606
Cdd:pfam03176 229 LRAGEDREEAVIRAVRGTGKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVDVLAALTLLPALLALL 301
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
451-608 |
6.22e-06 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 49.58 E-value: 6.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 451 NVENGLMAMIyGLLAVVLFMSIYYRKFglVANLALLANLVI----IIGVMSMV------PGATMTLPGIAGIVLtIGMSV 520
Cdd:TIGR00833 743 NSDLGLISII-TLAIVFMILALLLRAP--VAPIVLIGSVALsylwALGLSVLAfqhilgAELHWSVLAGVFVLL-VALGV 818
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 521 DANVLIFERIREELRDGrsIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTAIVGTR 600
Cdd:TIGR00833 819 DYNMLLVSRIKEESPAG--NRTGIIRALGSTGGVITAAGLVFAGTMAALASAQLTAIAQFGFTVGVGILLDTFIVRSVTV 896
|
....*...
gi 1381974558 601 ALVNLLWG 608
Cdd:TIGR00833 897 PALTLLLG 904
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
494-589 |
1.71e-05 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 47.84 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 494 GVMSMVPgatmtlpgIAGIVLTIGMSVDANVLIFERIREELRDGRSIQQAIHMGYEKAFGTITDAnittfitAIILFAV- 572
Cdd:COG2409 579 PLDSFVP--------LLLFVILFGLGMDYEVFLVSRIREEYDRGGGTREAVIRGLARTGRVITSA-------ALIMAAVf 643
|
90 100
....*....|....*....|...
gi 1381974558 573 ---GTGP---IKGFAVTLMIGIL 589
Cdd:COG2409 644 aafATSPlvfLKQIGFGLAVGVL 666
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
457-589 |
1.31e-04 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 45.23 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 457 MAMIYGLLAVVLFMSIYYR-KFGLVANLALLANLVIIIGVMS----MVPGATMTLPGIAGIVLTIGMSVDANVLIFERIR 531
Cdd:PRK12911 1238 IALFGALGIILLYVSLRFEwRYAFSAICALIHDLLATCAVLValhfFLQKIQIDLQAIGALMTVLGYSLNNTLIIFDRIR 1317
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 532 EELRDG--RSIQQAIHMGYEKAFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGIL 589
Cdd:PRK12911 1318 EDRQEKlfTPMPILINDALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGIL 1377
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
454-595 |
7.66e-04 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 42.53 E-value: 7.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 454 NGLMAMIYGLLAVVLFMSIYYRKFGLVANLALLANLVIIIGVMSMVpGATMTLPGIAGIVLTIGMSVDANVLIFERIREE 533
Cdd:COG4258 642 LWLLLLALLLILLLLLLRLRSLRRALRVLLPPLLAVLLTLAILGLL-GIPLNLFHLIALLLVLGIGIDYALFFTEGLLDK 720
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1381974558 534 LRDGRSiqqaihmgyekaFGTITDANITTFITAIILFAVGTGPIKGFAVTLMIGILASMFTA 595
Cdd:COG4258 721 GELART------------LLSILLAALTTLLGFGLLAFSSTPALRSFGLTVLLGILLALLLA 770
|
|
| HpnN |
TIGR03480 |
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing ... |
457-606 |
1.04e-03 |
|
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Pssm-ID: 274598 [Multi-domain] Cd Length: 862 Bit Score: 42.29 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 457 MAMIYGLLAVVLFMSIYYRKFGLVAN--LALLANLVIIIGVMSMVPGaTMTLPGIAGIVLTIGMSVDANVLIFERIREEL 534
Cdd:TIGR03480 273 VAGLLSFVLVLVLLWLALRSPRLVFAvlVTLIVGLILTAAFATLAVG-HLNLISVAFAVLFIGLGVDFAIQFSLRYREER 351
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1381974558 535 RDGRSIQQAIHMGYEKAFGTITDANITtfiTAIILFAVGTGPIKGFAvtlMIGILA--SMFTAIVGTR----ALVNLL 606
Cdd:TIGR03480 352 FRGGNHREALSVAARRMGAALLLAALA---TAAGFFAFLPTDYKGVS---ELGIIAgtGMFIALFVTLtvlpALLRLL 423
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
115-141 |
1.62e-03 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 36.11 E-value: 1.62e-03
10 20
....*....|....*....|....*..
gi 1381974558 115 AIGAGPLKLGLDLRGGVHFLMEVDMDE 141
Cdd:pfam07549 1 SLFTRGLNLGLDFTGGTVIELQFDQPV 27
|
|
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
456-597 |
5.72e-03 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 39.70 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 456 LMAMIYGLLAVVLFMSIYYRKFGLVanLALLANLVI-IIGVMS--MVPGATMTLPGIAGIVLTIGMSVDANVLIFERIRE 532
Cdd:COG0841 854 GLAFLLALLLVYLVLAAQFESFIQP--LIILLTVPLaLIGALLglLLTGTPLNIYSQIGLIMLIGIVVKNAILLVDFANQ 931
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1381974558 533 ELRDGRSIQQAIHMGYEKAFGTITDANITTFITAI-ILFAVGTG-----PIkgfAVTLMIGILASMFTAIV 597
Cdd:COG0841 932 LREEGMSLREAILEAARLRLRPILMTSLATILGLLpLALGTGAGaefrqPL---GIAVIGGLLFSTLLTLF 999
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
479-614 |
7.28e-03 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 39.59 E-value: 7.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381974558 479 LVANLALLANLVIIIGVMSMVpgatmtlpgiaGIVLTIGMSVDANVLIFERIREELR-DGRSIQQAIHmgyeKAFGTITD 557
Cdd:pfam00873 369 LLGTFAVMKAFGFSINTLTLG-----------GLVLAIGLVVDDAIVVVENIERVLEeNGLKPLEAAY----KSMGEIGG 433
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1381974558 558 ANIttFITAI-------ILFAVG-TGPI-KGFAVTLMIGILASMFTAIVGTRALVNLLWGGKRLKK 614
Cdd:pfam00873 434 ALV--AIALVlsavflpILFLGGlTGRIfRQFAITIVLAILLSVLVALTLTPALCATLLKPRREPK 497
|
|
| |
