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Conserved domains on  [gi|1408391019|ref|WP_111643422|]
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DUF6559 family protein [Marinimicrobium alkaliphilum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6559 super family cl48365
Family of unknown function (DUF6559); This family of proteins is functionally uncharacterized. ...
 8-81 2.53e-10

Family of unknown function (DUF6559); This family of proteins is functionally uncharacterized. This family of proteins is found in Gammaproteobacteria. Proteins in this family are approximately 120 amino acids in length. There are two conserved motifs, LxxxYG and Y/FT/SxxQI/V.


The actual alignment was detected with superfamily member pfam20196:

Pssm-ID: 466347  Cd Length: 125  Bit Score: 53.19  E-value: 2.53e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1408391019   8 KKRAVSKYVSKVSILLKKDYGPSDSYTGSQIESTVMRYRLERKYLNYALFLFAFENSLSEFSDREDFYVYEDLK 81
Cdd:pfam20196   6 KRRRIKKYIKILSPALVKGYGSRDYFSVGQVEASASELRLSNRQQKYALALFCDPTDLNLINHPEIDEGLDALR 79
 
Name Accession Description Interval E-value
DUF6559 pfam20196
Family of unknown function (DUF6559); This family of proteins is functionally uncharacterized. ...
 8-81 2.53e-10

Family of unknown function (DUF6559); This family of proteins is functionally uncharacterized. This family of proteins is found in Gammaproteobacteria. Proteins in this family are approximately 120 amino acids in length. There are two conserved motifs, LxxxYG and Y/FT/SxxQI/V.


Pssm-ID: 466347  Cd Length: 125  Bit Score: 53.19  E-value: 2.53e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1408391019   8 KKRAVSKYVSKVSILLKKDYGPSDSYTGSQIESTVMRYRLERKYLNYALFLFAFENSLSEFSDREDFYVYEDLK 81
Cdd:pfam20196   6 KRRRIKKYIKILSPALVKGYGSRDYFSVGQVEASASELRLSNRQQKYALALFCDPTDLNLINHPEIDEGLDALR 79
 
Name Accession Description Interval E-value
DUF6559 pfam20196
Family of unknown function (DUF6559); This family of proteins is functionally uncharacterized. ...
 8-81 2.53e-10

Family of unknown function (DUF6559); This family of proteins is functionally uncharacterized. This family of proteins is found in Gammaproteobacteria. Proteins in this family are approximately 120 amino acids in length. There are two conserved motifs, LxxxYG and Y/FT/SxxQI/V.


Pssm-ID: 466347  Cd Length: 125  Bit Score: 53.19  E-value: 2.53e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1408391019   8 KKRAVSKYVSKVSILLKKDYGPSDSYTGSQIESTVMRYRLERKYLNYALFLFAFENSLSEFSDREDFYVYEDLK 81
Cdd:pfam20196   6 KRRRIKKYIKILSPALVKGYGSRDYFSVGQVEASASELRLSNRQQKYALALFCDPTDLNLINHPEIDEGLDALR 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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