NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1427876266|ref|WP_113667299|]
View 

YcgL domain-containing protein [Colwellia ponticola]

Protein Classification

YcgL domain-containing protein( domain architecture ID 10006930)

YcgL domain-containing protein similar to Escherichia coli protein YcgL with a novel alpha/beta/alpha sandwich fold

CATH:  3.10.510.20

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YcgL COG3100
Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown];
1-85 8.46e-44

Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown];


:

Pssm-ID: 442334  Cd Length: 85  Bit Score: 136.46  E-value: 8.46e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427876266  1 MLCAIYKSARKAQTYLFVKKRDDFSSVPEQLMKVFGTPNLVTIINLATKDKLGMADLEKVKTNLLEEGFYLQLPPPTEDL 80
Cdd:COG3100    1 MLCAIYKSPKKDETYLYVEKRDDFSRVPEALLQMFGKPEFVMDLLLTPERKLARADAEKVLAALEEQGFYLQMPPPEENL 80


                 ....*
gi 1427876266 81 LKEHK 85
Cdd:COG3100   81 LKDHL 85
 
Name Accession Description Interval E-value
YcgL COG3100
Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown];
1-85 8.46e-44

Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown];


Pssm-ID: 442334  Cd Length: 85  Bit Score: 136.46  E-value: 8.46e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427876266  1 MLCAIYKSARKAQTYLFVKKRDDFSSVPEQLMKVFGTPNLVTIINLATKDKLGMADLEKVKTNLLEEGFYLQLPPPTEDL 80
Cdd:COG3100    1 MLCAIYKSPKKDETYLYVEKRDDFSRVPEALLQMFGKPEFVMDLLLTPERKLARADAEKVLAALEEQGFYLQMPPPEENL 80


                 ....*
gi 1427876266 81 LKEHK 85
Cdd:COG3100   81 LKDHL 85
YcgL pfam05166
YcgL domain; This family of proteins formerly called DUF709 includes the E. coli gene ycgL. ...
 3-75 1.04e-35

YcgL domain; This family of proteins formerly called DUF709 includes the E. coli gene ycgL. homologs of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure.


Pssm-ID: 428344  Cd Length: 73  Bit Score: 115.67  E-value: 1.04e-35
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1427876266  3 CAIYKSARKAQTYLFVKKRDDFSSVPEQLMKVFGTPNLVTIINLATKDKLGMADLEKVKTNLLEEGFYLQLPP 75
Cdd:pfam05166  1 CAIYKSSKKDETYLYVEKRDDFSRVPEALLAMFGKPQFVMLLNLTPERKLARADIEKVLAALKEQGFYLQLPP 73
 
Name Accession Description Interval E-value
YcgL COG3100
Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown];
1-85 8.46e-44

Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown];


Pssm-ID: 442334  Cd Length: 85  Bit Score: 136.46  E-value: 8.46e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427876266  1 MLCAIYKSARKAQTYLFVKKRDDFSSVPEQLMKVFGTPNLVTIINLATKDKLGMADLEKVKTNLLEEGFYLQLPPPTEDL 80
Cdd:COG3100    1 MLCAIYKSPKKDETYLYVEKRDDFSRVPEALLQMFGKPEFVMDLLLTPERKLARADAEKVLAALEEQGFYLQMPPPEENL 80


                 ....*
gi 1427876266 81 LKEHK 85
Cdd:COG3100   81 LKDHL 85
YcgL pfam05166
YcgL domain; This family of proteins formerly called DUF709 includes the E. coli gene ycgL. ...
 3-75 1.04e-35

YcgL domain; This family of proteins formerly called DUF709 includes the E. coli gene ycgL. homologs of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure.


Pssm-ID: 428344  Cd Length: 73  Bit Score: 115.67  E-value: 1.04e-35
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1427876266  3 CAIYKSARKAQTYLFVKKRDDFSSVPEQLMKVFGTPNLVTIINLATKDKLGMADLEKVKTNLLEEGFYLQLPP 75
Cdd:pfam05166  1 CAIYKSSKKDETYLYVEKRDDFSRVPEALLAMFGKPQFVMLLNLTPERKLARADIEKVLAALKEQGFYLQLPP 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH