|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
27-328 |
2.55e-179 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 497.62 E-value: 2.55e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 27 LFSRLQERLSRTRHNLTDGLSNLLLGRKTIDDELLEELETLLLTADVGVEATSRIINDLTQRVDRKELSDPQLLMQLLKQ 106
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 107 HLREILLACDEPIgEHNGGKPLVMLMVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVI 186
Cdd:COG0552 81 ELLEILDPVDKPL-AIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 187 AQHTGADAASVVFDALQAATSRSIDVLIADTAGRLHTKANLMEELAKISRVMKKIDPDAPHEVLLVVDAGTGQNAVNQAV 266
Cdd:COG0552 160 AQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAK 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1459915653 267 QFHQTVGLTGLVITKLDGTAKGGVVFAIADKVKVPIRFIGVGEAIEDLREFNPDEFVDALFE 328
Cdd:COG0552 240 VFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
1-328 |
8.44e-176 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 489.22 E-value: 8.44e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 1 MFGFGKGKKqdqqgaaslppEEEKRGLFSRLQERLSRTRHNLTDGLSNLLLGRKtIDDELLEELETLLLTADVGVEATSR 80
Cdd:PRK10416 1 FFSWLKKKK-----------KEKKEGWFERLKKGLSKTRENFGEGINGLFAKKK-IDEDLLEELEELLIEADVGVETTEE 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 81 IINDLTQRVDRKELSDPQLLMQLLKQHLREILLACDEPIgEHNGGKPLVMLMVGINGAGKTTTIGKLARKFQLDGESVML 160
Cdd:PRK10416 69 IIEELRERVKRKNLKDPEELKELLKEELAEILEPVEKPL-NIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 161 AAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAATSRSIDVLIADTAGRLHTKANLMEELAKISRVMKK 240
Cdd:PRK10416 148 AAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKK 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 241 IDPDAPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKGGVVFAIADKVKVPIRFIGVGEAIEDLREFNPD 320
Cdd:PRK10416 228 ADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAE 307
|
....*...
gi 1459915653 321 EFVDALFE 328
Cdd:PRK10416 308 EFVDALLG 315
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
71-327 |
2.32e-127 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 365.04 E-value: 2.32e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 71 ADVGVEATSRIINDLTQRVDRKELSDPQLLMQLLKQHLREILL-----ACDEPIGEHNGgKPLVMLMVGINGAGKTTTIG 145
Cdd:TIGR00064 17 SDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKedllkNTDLELIVEEN-KPNVILFVGVNGVGKTTTIA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 146 KLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAATSRSIDVLIADTAGRLHTKA 225
Cdd:TIGR00064 96 KLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKV 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 226 NLMEELAKISRVMKKIDPDAPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKGGVVFAIADKVKVPIRFI 305
Cdd:TIGR00064 176 NLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAYELKLPIKFI 255
|
250 260
....*....|....*....|..
gi 1459915653 306 GVGEAIEDLREFNPDEFVDALF 327
Cdd:TIGR00064 256 GVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
129-326 |
1.15e-115 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 332.61 E-value: 1.15e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 129 VMLMVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAATSR 208
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 209 SIDVLIADTAGRLHTKANLMEELAKISRVMKKIDPDAPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKG 288
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 1459915653 289 GVVFAIADKVKVPIRFIGVGEAIEDLREFNPDEFVDAL 326
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
127-328 |
4.31e-102 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 297.78 E-value: 4.31e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 127 PLVMLMVGINGAGKTTTIGKLARKFQL-DGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAA 205
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLkGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 206 TSRSIDVLIADTAGRLHTKANLMEELAKISRVMKkidpdaPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGT 285
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1459915653 286 AKGGVVFAIADKVKVPIRFIGVGEAIEDLREFNPDEFVDALFE 328
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
129-326 |
1.81e-99 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 290.98 E-value: 1.81e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 129 VMLMVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAATSR 208
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 209 SIDVLIADTAGRLHTKANLMEELAKISRVMKkidpdaPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKG 288
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVVA------PDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 1459915653 289 GVVFAIADKVKVPIRFIGVGEAIEDLREFNPDEFVDAL 326
Cdd:pfam00448 156 GAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
27-328 |
2.55e-179 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 497.62 E-value: 2.55e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 27 LFSRLQERLSRTRHNLTDGLSNLLLGRKTIDDELLEELETLLLTADVGVEATSRIINDLTQRVDRKELSDPQLLMQLLKQ 106
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 107 HLREILLACDEPIgEHNGGKPLVMLMVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVI 186
Cdd:COG0552 81 ELLEILDPVDKPL-AIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 187 AQHTGADAASVVFDALQAATSRSIDVLIADTAGRLHTKANLMEELAKISRVMKKIDPDAPHEVLLVVDAGTGQNAVNQAV 266
Cdd:COG0552 160 AQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAK 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1459915653 267 QFHQTVGLTGLVITKLDGTAKGGVVFAIADKVKVPIRFIGVGEAIEDLREFNPDEFVDALFE 328
Cdd:COG0552 240 VFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
1-328 |
8.44e-176 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 489.22 E-value: 8.44e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 1 MFGFGKGKKqdqqgaaslppEEEKRGLFSRLQERLSRTRHNLTDGLSNLLLGRKtIDDELLEELETLLLTADVGVEATSR 80
Cdd:PRK10416 1 FFSWLKKKK-----------KEKKEGWFERLKKGLSKTRENFGEGINGLFAKKK-IDEDLLEELEELLIEADVGVETTEE 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 81 IINDLTQRVDRKELSDPQLLMQLLKQHLREILLACDEPIgEHNGGKPLVMLMVGINGAGKTTTIGKLARKFQLDGESVML 160
Cdd:PRK10416 69 IIEELRERVKRKNLKDPEELKELLKEELAEILEPVEKPL-NIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 161 AAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAATSRSIDVLIADTAGRLHTKANLMEELAKISRVMKK 240
Cdd:PRK10416 148 AAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKK 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 241 IDPDAPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKGGVVFAIADKVKVPIRFIGVGEAIEDLREFNPD 320
Cdd:PRK10416 228 ADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAE 307
|
....*...
gi 1459915653 321 EFVDALFE 328
Cdd:PRK10416 308 EFVDALLG 315
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
71-327 |
2.32e-127 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 365.04 E-value: 2.32e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 71 ADVGVEATSRIINDLTQRVDRKELSDPQLLMQLLKQHLREILL-----ACDEPIGEHNGgKPLVMLMVGINGAGKTTTIG 145
Cdd:TIGR00064 17 SDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKedllkNTDLELIVEEN-KPNVILFVGVNGVGKTTTIA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 146 KLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAATSRSIDVLIADTAGRLHTKA 225
Cdd:TIGR00064 96 KLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKV 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 226 NLMEELAKISRVMKKIDPDAPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKGGVVFAIADKVKVPIRFI 305
Cdd:TIGR00064 176 NLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAYELKLPIKFI 255
|
250 260
....*....|....*....|..
gi 1459915653 306 GVGEAIEDLREFNPDEFVDALF 327
Cdd:TIGR00064 256 GVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
129-326 |
1.15e-115 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 332.61 E-value: 1.15e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 129 VMLMVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAATSR 208
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 209 SIDVLIADTAGRLHTKANLMEELAKISRVMKKIDPDAPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKG 288
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 1459915653 289 GVVFAIADKVKVPIRFIGVGEAIEDLREFNPDEFVDAL 326
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
127-328 |
4.31e-102 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 297.78 E-value: 4.31e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 127 PLVMLMVGINGAGKTTTIGKLARKFQL-DGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAA 205
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLkGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 206 TSRSIDVLIADTAGRLHTKANLMEELAKISRVMKkidpdaPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGT 285
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1459915653 286 AKGGVVFAIADKVKVPIRFIGVGEAIEDLREFNPDEFVDALFE 328
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
129-326 |
1.81e-99 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 290.98 E-value: 1.81e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 129 VMLMVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAATSR 208
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 209 SIDVLIADTAGRLHTKANLMEELAKISRVMKkidpdaPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKG 288
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVVA------PDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 1459915653 289 GVVFAIADKVKVPIRFIGVGEAIEDLREFNPDEFVDAL 326
Cdd:pfam00448 156 GAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
129-326 |
2.94e-89 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 265.39 E-value: 2.94e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 129 VMLMVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAATSR 208
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 209 SIDVLIADTAGRLHTKANLMEELAKISRVmkkidpDAPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKG 288
Cdd:cd03115 82 GYDVLLVDTAGRLQKDEPLMEELKKVKEV------ESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 1459915653 289 GVVFAIADKVKVPIRFIGVGEAIEDLREFNPDEFVDAL 326
Cdd:cd03115 156 GAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
71-328 |
5.55e-85 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 259.52 E-value: 5.55e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 71 ADVGVEATSRIINDLTQRVD---RKELSDPQ-LLMQLLKQHLREIL---LACDEPIGEHNGGKPLVMLMVGINGAGKTTT 143
Cdd:PRK14974 77 SDVALEVAEEILESLKEKLVgkkVKRGEDVEeIVKNALKEALLEVLsvgDLFDLIEEIKSKGKPVVIVFVGVNGTGKTTT 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 144 IGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAATSRSIDVLIADTAGRLHT 223
Cdd:PRK14974 157 IAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHT 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 224 KANLMEELAKISRVMKkidpdaPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKGGVVFAIADKVKVPIR 303
Cdd:PRK14974 237 DANLMDELKKIVRVTK------PDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPIL 310
|
250 260
....*....|....*....|....*
gi 1459915653 304 FIGVGEAIEDLREFNPDEFVDALFE 328
Cdd:PRK14974 311 FLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
123-324 |
7.37e-78 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 244.16 E-value: 7.37e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 123 NGGKPLVMLMVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDAL 202
Cdd:COG0541 96 AKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEEDGKDPVDIAKRAL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 203 QAATSRSIDVLIADTAGRLHTKANLMEELAKISRVMKkidpdaPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKL 282
Cdd:COG0541 176 EYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVN------PDETLLVVDAMTGQDAVNVAKAFNEALGLTGVILTKL 249
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1459915653 283 DGTAKGGVVFAIADKVKVPIRFIGVGEAIEDLREFNPDEFVD 324
Cdd:COG0541 250 DGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMAS 291
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
129-320 |
3.89e-69 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 214.00 E-value: 3.89e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 129 VMLMVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAATSR 208
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 209 SIDVLIADTAGRLHTKANLMEELAKISRVMKkidpdaPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKG 288
Cdd:cd18539 82 GFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARG 155
|
170 180 190
....*....|....*....|....*....|..
gi 1459915653 289 GVVFAIADKVKVPIRFIGVGEAIEDLREFNPD 320
Cdd:cd18539 156 GAALSIRHVTGKPIKFIGVGEKIEDLEPFHPD 187
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
126-323 |
9.71e-66 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 213.15 E-value: 9.71e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 126 KPLVMLMVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAA 205
Cdd:PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 206 TSRsiDVLIADTAGRLHTKANLMEELAKISRVMKkidpdaPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGT 285
Cdd:PRK00771 174 KKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVK------PDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGT 245
|
170 180 190
....*....|....*....|....*....|....*...
gi 1459915653 286 AKGGVVFAIADKVKVPIRFIGVGEAIEDLREFNPDEFV 323
Cdd:PRK00771 246 AKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFI 283
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
129-323 |
7.82e-57 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 182.39 E-value: 7.82e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 129 VMLMVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAATSR 208
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKKE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 209 SIDVLIADTAGRLHTKANLMEELAKISRVMKkidpdaPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKG 288
Cdd:cd17875 82 KFDIIIVDTSGRHKQEEELFEEMKQISDAVK------PDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKG 155
|
170 180 190
....*....|....*....|....*....|....*
gi 1459915653 289 GVVFAIADKVKVPIRFIGVGEAIEDLREFNPDEFV 323
Cdd:cd17875 156 GGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRFV 190
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
129-326 |
2.40e-47 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 158.55 E-value: 2.40e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 129 VMLMVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAATSR 208
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 209 SIDVLIADTAGRLHTKANLMEELAKIsrvMKKIDPDApheVLLVVDAGTGQNAVNQAVQFHQTV----------GLTGLV 278
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKL---IKENNPDL---VLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGIV 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1459915653 279 ITKLDgtakggvvfAIADKV----------KVPIRFIGVGEAIEDLREFNPDEFVDAL 326
Cdd:cd17876 156 LTKFD---------TIDDKVgaalsmvyatGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
71-326 |
1.32e-39 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 144.21 E-value: 1.32e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 71 ADVGVEATSRIINDLTQRVDRKELSDPQLLMQLLKQHLREILLACDEPIGEH---NGGKPLVMLMVGINGAGKTTTIGKL 147
Cdd:TIGR01425 41 SDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELCNLVDPGVEAftpKKGKTCVIMFVGLQGAGKTTTCTKL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 148 ARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAATSRSIDVLIADTAGRLHTKANL 227
Cdd:TIGR01425 121 AYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKEL 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 228 MEELAKISRVMKkidpdaPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKGGVVFAIADKVKVPIRFIGV 307
Cdd:TIGR01425 201 FEEMQQVREAIK------PDSIIFVMDGSIGQAAFGQAKAFKDSVEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGT 274
|
250
....*....|....*....
gi 1459915653 308 GEAIEDLREFNPDEFVDAL 326
Cdd:TIGR01425 275 GEHVDEFEIFDAEPFVSKL 293
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
74-328 |
1.33e-39 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 142.70 E-value: 1.33e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 74 GVEATsrIINDLTQRVdrKELSDPQLLMQLLKQHLREILLACDEPIGEHNGgkplVMLMVGINGAGKTTTIGKLARKFQL 153
Cdd:COG1419 119 GVSPE--LARELLEKL--PEDLSAEEAWRALLEALARRLPVAEDPLLDEGG----VIALVGPTGVGKTTTIAKLAARFVL 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 154 DG-ESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAAsvvfDALQAATSRSIdVLIaDTAGRLHTKANLMEELA 232
Cdd:COG1419 191 RGkKKVALITTDTYRIGAVEQLKTYARILGVPVEVAYDPEELK----EALERLRDKDL-VLI-DTAGRSPRDPELIEELK 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 233 KISRVMKKIdpdaphEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKGGVVFAIADKVKVPIRFIGVGEAI- 311
Cdd:COG1419 265 ALLDAGPPI------EVYLVLSATTKYEDLKEIVEAFSSLGLDGLILTKLDETASLGSILNLLIRTGLPLSYITNGQRVp 338
|
250
....*....|....*..
gi 1459915653 312 EDLREFNPDEFVDALFE 328
Cdd:COG1419 339 EDIEVADPERLARLLLG 355
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
129-323 |
1.44e-32 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 119.58 E-value: 1.44e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 129 VMLMVGINGAGKTTTIGKLARKFQLD-GESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAAsvvfDALQAATS 207
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKkGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVAEDPEDLA----DALERLSD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 208 RsiDVLIADTAGRLHTKANLMEELAKISRVMKKIdpdaphEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAK 287
Cdd:cd17873 78 R--DLILIDTAGRSPRDKEQLEELKELLGAGEDI------EVHLVLSATTKAKDLKEIIERFSPLGYRGLILTKLDETTS 149
|
170 180 190
....*....|....*....|....*....|....*..
gi 1459915653 288 GGVVFAIADKVKVPIRFIGVGEAI-EDLREFNPDEFV 323
Cdd:cd17873 150 LGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLA 186
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
104-328 |
3.10e-30 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 118.84 E-value: 3.10e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 104 LKQHLREILLACDEPIGEHNGgkplVMLMVGINGAGKTTTIGKLARKFQL--DGESVMLAAGDTFRAAAVEQLQTWGERN 181
Cdd:PRK05703 202 LLELLANMIPVRVEDILKQGG----VVALVGPTGVGKTTTLAKLAARYALlyGKKKVALITLDTYRIGAVEQLKTYAKIM 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 182 QIQVIAQHTGADAAsvvfDALQAATSRSIdVLIaDTAGRLHTKANLMEELAKISRvmkkiDPDAPHEVLLVVDAgTGQNA 261
Cdd:PRK05703 278 GIPVEVVYDPKELA----KALEQLRDCDV-ILI-DTAGRSQRDKRLIEELKALIE-----FSGEPIDVYLVLSA-TTKYE 345
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 262 VNQAV--QFhQTVGLTGLVITKLDGTAKGGVVFAIADKVKVPIRFIGVGEAI-EDLREFNPDEFVDALFE 328
Cdd:PRK05703 346 DLKDIykHF-SRLPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
74-219 |
2.31e-16 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 77.76 E-value: 2.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 74 GVEATsrIINDLTQRVdrKELSDPQLLMQLLKQHLREIL--LACDEPIGEhnggKPLVMLMVGINGAGKTTTIGKLARKF 151
Cdd:TIGR03499 147 GVSEE--LARELLEKL--PEDADAEDAWRWLREALEGMLpvKPEEDPILE----QGGVIALVGPTGVGKTTTLAKLAARF 218
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 152 QLDGE--SVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAAsvvfDALQAATSRSIdVLIaDTAG 219
Cdd:TIGR03499 219 ALEHGkkKVALITTDTYRIGAVEQLKTYAEILGIPVKVARDPKELR----EALDRLRDKDL-ILI-DTAG 282
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
129-329 |
1.37e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 71.37 E-value: 1.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 129 VMLMVGINGAGKTTTIGKLARKFQL--DGESVMLAAGDTFRAAAVEQLQTWGernQIQVIAQHTGADAASVVFdALQAAT 206
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAreGADQLALLTTDSFRIGALEQLRIYG---RILGVPVHAVKDAADLRF-ALAALG 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 207 SRSIdVLIaDTAGRLHTKANLMEELAKISRVmkkidpDAPHEVLLVVDAGTGQNAVNQAVQ-FHQTVG--LTGLVITKLD 283
Cdd:PRK14723 263 DKHL-VLI-DTVGMSQRDRNVSEQIAMLCGV------GRPVRRLLLLNAASHGDTLNEVVHaYRHGAGedVDGCIITKLD 334
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1459915653 284 GTAKGGVVFAIADKVKVPIRFIGVGEAI-EDLREFNPDEFVDALFET 329
Cdd:PRK14723 335 EATHLGPALDTVIRHRLPVHYVSTGQKVpEHLELAQADELVDRAFAT 381
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
125-311 |
3.86e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 69.61 E-value: 3.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 125 GKPLVMLMVGINGAGKTTTIGKLARKFQLD-GESVMLAAGDTFRAAAVEQLQTWgernqiqviaqhtgADAASVVFDAL- 202
Cdd:PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHmGKSVSLYTTDNYRIAAIEQLKRY--------------ADTMGMPFYPVk 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 203 ------QAATSRSIDVLIADTAGRLHTKANLMEELAKISRVMKKIDPDaphEVLLVVDAGTGQNAVNQAVQFHQTVGLTG 276
Cdd:PRK12724 287 dikkfkETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSV---ENLLVLSSTSSYHHTLTVLKAYESLNYRR 363
|
170 180 190
....*....|....*....|....*....|....*
gi 1459915653 277 LVITKLDGTAKGGVVFAIADKVKVPIRFIGVGEAI 311
Cdd:PRK12724 364 ILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEV 398
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
76-326 |
5.72e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 68.77 E-value: 5.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 76 EATSRIINDLTQRVdRKELS-----DPQLLMQLLKQHLREILLaCDEPIGEHNggKPLVMLMVGINGAGKTTTIGKLARK 150
Cdd:PRK12723 122 DFSESYIKDINEFI-KKEFSlsdldDYDKVRDSVIIYIAKTIK-CSGSIIDNL--KKRVFILVGPTGVGKTTTIAKLAAI 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 151 FQLDGE----SVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDalqaatSRSIDVLIADTAGRlhTKAN 226
Cdd:PRK12723 198 YGINSDdkslNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ------SKDFDLVLVDTIGK--SPKD 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 227 LMeELAKISRVMKKIDPDAphEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKGGVVFAIADKVKVPIRFIG 306
Cdd:PRK12723 270 FM-KLAEMKELLNACGRDA--EFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVT 346
|
250 260
....*....|....*....|.
gi 1459915653 307 VGEAI-EDLREFNPDEFVDAL 326
Cdd:PRK12723 347 DGQIVpHNISIAEPLTFIKKI 367
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
129-323 |
1.90e-12 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 67.71 E-value: 1.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 129 VMLMVGINGAGKTTTIGKLARKF--QLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQViaqHTgADAASVVFDALQAAT 206
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV---HE-ADSAESLLDLLERLR 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 207 SRSIdVLIaDTAGRLHTKANLMEELA--KISRVMKKidpdaphevLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDG 284
Cdd:PRK12727 428 DYKL-VLI-DTAGMGQRDRALAAQLNwlRAARQVTS---------LLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDE 496
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1459915653 285 TAKGGVVFAIADKVKVPIRFIGVGEAI-EDLREFNPDEFV 323
Cdd:PRK12727 497 TGRFGSALSVVVDHQMPITWVTDGQRVpDDLHRANAASLV 536
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
132-312 |
4.32e-12 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 66.63 E-value: 4.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 132 MVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHtgaDAASVVFDALQAATSRSID 211
Cdd:PRK11889 246 LIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEARVD 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 212 VLIADTAGRLHTKANLMEELAKisrVMKKIDPDApheVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKGGVV 291
Cdd:PRK11889 323 YILIDTAGKNYRASETVEEMIE---TMGQVEPDY---ICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGEL 396
|
170 180
....*....|....*....|.
gi 1459915653 292 FAIADKVKVPIRFIGVGEAIE 312
Cdd:PRK11889 397 LKIPAVSSAPIVLMTDGQDVK 417
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
129-313 |
1.65e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 64.36 E-value: 1.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 129 VMLMVGINGAGKTTTIGKLARK--FQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAAsvvfdaLQAAT 206
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAARcvMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 207 SRSIDVLIADTAGRLHTKANLMEELAKISrvmkkiDPDAPHEVLLVVDAGTGQNAVNQAVQFHQTVG---------LTGL 277
Cdd:PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSAAgqpkaalpdLAGC 286
|
170 180 190
....*....|....*....|....*....|....*.
gi 1459915653 278 VITKLDGTAKGGVVFAIADKVKVPIRFIGVGEAIED 313
Cdd:PRK14722 287 ILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
129-313 |
2.54e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 63.99 E-value: 2.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 129 VMLMVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAAsvvfDALQAAT-S 207
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELE----EAVQYMTyV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 208 RSIDVLIADTAGRLHTKAnlmEELAKISRVMKKIDPDApheVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAK 287
Cdd:PRK12726 284 NCVDHILIDTVGRNYLAE---ESVSEISAYTDVVHPDL---TCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTR 357
|
170 180
....*....|....*....|....*.
gi 1459915653 288 GGVVFAIADKVKVPIRFIGVGEAIED 313
Cdd:PRK12726 358 IGDLYTVMQETNLPVLYMTDGQNITE 383
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
132-312 |
5.64e-11 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 62.07 E-value: 5.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 132 MVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHtgaDAASVVFDALQAATSRSID 211
Cdd:PRK06731 80 LIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEARVD 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 212 VLIADTAGRLHTKANLMEELAKisrVMKKIDPDApheVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKGGVV 291
Cdd:PRK06731 157 YILIDTAGKNYRASETVEEMIE---TMGQVEPDY---ICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGEL 230
|
170 180
....*....|....*....|.
gi 1459915653 292 FAIADKVKVPIRFIGVGEAIE 312
Cdd:PRK06731 231 LKIPAVSSAPIVLMTDGQDVK 251
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
85-328 |
4.18e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 60.35 E-value: 4.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 85 LTQRV--DRKELSDPQLLMQLLKQHLREIllaCDEPIGEHNGgkplVMLMVGINGAGKTTTIGKLARK--FQLDGESVML 160
Cdd:PRK14721 154 LLEKLpaDRDFEQSLKKTISLLTLNLRTI---GGDEIIEQGG----VYALIGPTGVGKTTTTAKLAARavIRHGADKVAL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 161 AAGDTFRAAAVEQLQTWGernQIQVIAQHTGADAAS--VVFDALQAATSrsidVLIaDTAGRLHTKANLMEELAKISRVM 238
Cdd:PRK14721 227 LTTDSYRIGGHEQLRIYG---KLLGVSVRSIKDIADlqLMLHELRGKHM----VLI-DTVGMSQRDQMLAEQIAMLSQCG 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 239 KKIdpdaphEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKGGVVFAIADKVKVPIRFIGVGEAI-EDLREF 317
Cdd:PRK14721 299 TQV------KHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALDAVIRRKLVLHYVTNGQKVpEDLHEA 372
|
250
....*....|.
gi 1459915653 318 NPDEFVDALFE 328
Cdd:PRK14721 373 NSRYLLHRIFK 383
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
126-241 |
1.59e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.84 E-value: 1.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 126 KPLVMLMVGINGAGKTTTIGKLARKFQLDGESVMLAAGDTFRAAAVEQLQtwgernQIQVIAQHTGADAASVVFDALQAA 205
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALA 74
|
90 100 110
....*....|....*....|....*....|....*.
gi 1459915653 206 TSRSIDVLIADTAGRLHTKANLMEELAKISRVMKKI 241
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLL 110
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
41-112 |
8.30e-06 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 43.31 E-value: 8.30e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1459915653 41 NLTDGLSNLLLGRKTIDDELLEELETLLLtADVGVEATSRIINDLTQRVDR---KELSDPQLLMQLLKQHLREIL 112
Cdd:smart00963 4 ALGKLLGELFLTEKDDEELLEELEEALLE-ADVGVEVVKEIIERVKEKAKGevlKGLTPKQEVKKILKEELVKIL 77
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
129-314 |
2.40e-05 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 45.73 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 129 VMLMVGINGAGKTTTIGKLARKFQL--DGESVMLAAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASvvfdALQAAT 206
Cdd:PRK06995 258 VFALMGPTGVGKTTTTAKLAARCVMrhGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRL----ALSELR 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 207 SRSIdVLIaDTAGRLHTKANLMEELAKISRVmkkidpDAPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTA 286
Cdd:PRK06995 334 NKHI-VLI-DTIGMSQRDRMVSEQIAMLHGA------GAPVKRLLLLNATSHGDTLNEVVQAYRGPGLAGCILTKLDEAA 405
|
170 180
....*....|....*....|....*....
gi 1459915653 287 KGGVVFAIADKVKVPIRFIGVGEAI-EDL 314
Cdd:PRK06995 406 SLGGALDVVIRYKLPLHYVSNGQRVpEDL 434
|
|
| Zeta_toxin |
pfam06414 |
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is ... |
124-233 |
6.94e-05 |
|
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Pssm-ID: 428926 Cd Length: 192 Bit Score: 43.12 E-value: 6.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1459915653 124 GGKPLVMLMVGINGAGKTTTIGKLARKFQLDGESVMLaAGDTFRAA---AVEQLQTWGERNqiqviAQHTGADAASVVFD 200
Cdd:pfam06414 8 QERPKAILLGGQPGAGKTELARALLDELGRQGNVVRI-DPDDFRELhphYRELQAADPKTA-----SEYTQPDASRWVEK 81
|
90 100 110
....*....|....*....|....*....|...
gi 1459915653 201 ALQAATSRSIDVLIADTAGRLHTKANLMEELAK 233
Cdd:pfam06414 82 LLQHAIENGYNIILEGTLRSPDVAKKIARALKA 114
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
42-108 |
1.03e-04 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 40.14 E-value: 1.03e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1459915653 42 LTDGLSNL---LLGRKTIDDELLEELETLLLT----ADVGVEATSRIINDLTQR-VDRKELSDPQLLMQLLKQHL 108
Cdd:pfam02881 1 LGEKLSSLfkgLRGKGKIDEEDLEEALKELEEalleADVGVEVVKKIIERLREKaVGEKKLKPPQEVKKILKEEL 75
|
|
| AdSS |
cd03108 |
adenylosuccinate synthetase; Adenylosuccinate synthetase (AdSS) catalyzes the first step in ... |
273-313 |
4.06e-04 |
|
adenylosuccinate synthetase; Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the r-phosphate group of GTP is transferred to the 6-oxygen atom of IMP. An aspartate then displaces this 6-phosphate group to form the product adenylosuccinate. Because of its critical role in purine biosynthesis, AdSS is a target of antibiotics, herbicides and antitumor drugs.
Pssm-ID: 349762 Cd Length: 316 Bit Score: 41.72 E-value: 4.06e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1459915653 273 GLTGLVITKLDGTAKGGVVFaIADKVKVPIRFIGVGEAIED 313
Cdd:cd03108 274 GLTELALTKLDVNAQKYIER-IEELLGVPITYISVGPDREQ 313
|
|
| AAA_17 |
pfam13207 |
AAA domain; |
133-172 |
3.00e-03 |
|
AAA domain;
Pssm-ID: 463810 [Multi-domain] Cd Length: 136 Bit Score: 37.22 E-value: 3.00e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1459915653 133 VGINGAGKTTTIGKLARKFQLdgesVMLAAGDTFRAAAVE 172
Cdd:pfam13207 1 TGVPGSGKTTQLKKLAEKLGF----PHISAGDLLREEAKE 36
|
|
| |
