NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1473377380|ref|WP_117841576|]
View 

MULTISPECIES: SdpI family protein [Clostridia]

Protein Classification

SdpI family protein( domain architecture ID 10613949)

SdpI family protein similar to Bacillus subtilis SdpI, an integral membrane protein that protects toxin-producing cells from being killed

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SdpI pfam13630
SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. ...
 35-101 1.59e-05

SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein.


:

Pssm-ID: 463940  Cd Length: 71  Bit Score: 39.86  E-value: 1.59e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1473377380  35 GYNTPTSRKSQEHWDYAQSIAPNIFIGIGKtlglveIVLCISLLLLNISTQTTVFAGVVVGIIFLIF 101
Cdd:pfam13630   9 GIRTPWTLKSEETWKKAHRLAGKLWIIAGL------LLLILALLLLILASTLLLLVVLLLAVIVPII 69
 
Name Accession Description Interval E-value
SdpI pfam13630
SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. ...
 35-101 1.59e-05

SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein.


Pssm-ID: 463940  Cd Length: 71  Bit Score: 39.86  E-value: 1.59e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1473377380  35 GYNTPTSRKSQEHWDYAQSIAPNIFIGIGKtlglveIVLCISLLLLNISTQTTVFAGVVVGIIFLIF 101
Cdd:pfam13630   9 GIRTPWTLKSEETWKKAHRLAGKLWIIAGL------LLLILALLLLILASTLLLLVVLLLAVIVPII 69
 
Name Accession Description Interval E-value
SdpI pfam13630
SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. ...
 35-101 1.59e-05

SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein.


Pssm-ID: 463940  Cd Length: 71  Bit Score: 39.86  E-value: 1.59e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1473377380  35 GYNTPTSRKSQEHWDYAQSIAPNIFIGIGKtlglveIVLCISLLLLNISTQTTVFAGVVVGIIFLIF 101
Cdd:pfam13630   9 GIRTPWTLKSEETWKKAHRLAGKLWIIAGL------LLLILALLLLILASTLLLLVVLLLAVIVPII 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH