|
Name |
Accession |
Description |
Interval |
E-value |
| RmuC |
COG1322 |
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and ... |
169-499 |
1.86e-136 |
|
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair];
Pssm-ID: 440933 Cd Length: 342 Bit Score: 398.39 E-value: 1.86e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 169 MRQQLNAEFQHLAQQILDEKSKSFAQTNQSALDMLLKPFKEQIEGFQKRVNEVHTEAVKGNANLETEIKRVLEIGLSMSQ 248
Cdd:COG1322 3 LQERLTGEFENLANEILEEKLEKFQEQNEERLDQLLKPLRETLDEFEKKLEETEKRRAESFGSLSERLEQLDEAQQQLSQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 249 DAQNLTTALKgNNKVAGNWGEVQLESALQMAGLLSGEHYLAQASYRDDEGRRFAPDFVVKLPDNKHLILDSKVSLVAYDQ 328
Cdd:COG1322 83 EVGNLTRALK-NKKTRGNWGEVQLERILEDAGLPEGCEYEEQVSLSNEDGSRLRPDVIVRLPGGKWLVIDAKFPLEAYER 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 329 AVRSEDNFAIQKALDDHCRSLRNHIDGLSKKNYSRLIGIKSPDFVLMFIPIEPAYIEAMKHDPQLFNYGYERNVILVSHT 408
Cdd:COG1322 162 LVEAEDEEEREAALKAHARSVRKHIKDLSEKDYWDLIPPETPDFVLMFLPIEGAYAEALERDPGLIEEAFEKRVVLVSPT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 409 TLMPILRTVANLWRIERGNVEAREISEKAGDIYNQVCVIAERLTKLGNTLSTASNQYNQTVTSLVGKqgLVGKVERFQQL 488
Cdd:COG1322 242 TLMALLRTVQMGWRQEAQEENASEIAELLGALYDEFGRFGERLEKLGKHLDQAQKDYNQAVGKLTGN--LLRRARKLEEL 319
|
330
....*....|.
gi 1524679626 489 SSKASQVLPQV 499
Cdd:COG1322 320 GAEEKKELPEL 330
|
|
| RmuC |
pfam02646 |
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The ... |
199-488 |
3.29e-111 |
|
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures
Pssm-ID: 460637 Cd Length: 286 Bit Score: 331.77 E-value: 3.29e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 199 ALDMLLKPFKEQIEGFQKRVNEVHTEAVKGNANLETEIKRVLEIGLSMSQDAQNLTTALKgNNKVAGNWGEVQLESALQM 278
Cdd:pfam02646 2 RLDQLLKPLREKLEKFLEKVEETEKERSERLASLKEQLGELQELNQQVGDEANNLTRALK-NPKTRGNWGEVQLERILEQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 279 AGLLSGEHYLAQASYRDDEGRrFAPDFVVKLPDNKHLILDSKVSLVAYDQAVRSEDNFAIQKALDDHCRSLRNHIDGLSK 358
Cdd:pfam02646 81 SGLREGCDYETQVSLTDEEGR-LRPDVIVKLPGGKHLVIDSKVPLEAYERYVNAEDDAEREAALKAHARSVRKHIKDLSS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 359 KNYSRLigiKSPDFVLMFIPIEPAYIEAMKHDPQLFNYGYERNVILVSHTTLMPILRTVANLWRIERGNVEAREISEKAG 438
Cdd:pfam02646 160 KDYWDL---PSPDFVLMFIPIEGAFAEALERDPGLIEEAFRKNVVLASPTTLLALLRTVAMGWRQEAQNKNAEEIAELAG 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1524679626 439 DIYNQVCVIAERLTKLGNTLSTASNQYNQTVTSLVGKqgLVGKVERFQQL 488
Cdd:pfam02646 237 ELYDRFGKFGEHLEKLGKKLDQAVKSYDKAVGKLEGN--LLRRARKLEEL 284
|
|
| PRK10361 |
PRK10361 |
DNA recombination protein RmuC; Provisional |
75-488 |
7.85e-83 |
|
DNA recombination protein RmuC; Provisional
Pssm-ID: 182409 [Multi-domain] Cd Length: 475 Bit Score: 265.31 E-value: 7.85e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 75 IAYLQQKITHAEEQENQLEEhinhlQERIGSAQAKAdslNQQLNISRH---QFELKENENQELYSKLSEVQQELMKLRTT 151
Cdd:PRK10361 18 IGWLFASYQHAQQKAEQLAE-----REEMVAELSAA---KQQITQSEHwraECELLNNEVRSLQSINTSLEADLREVTTR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 152 LSEKQENFEQQQQNFLDMRQQLNAEFQHLAQQILDEKSKSFAQTNQSALDMLLKPFKEQIEGFQKRVNEVHTEAVKGNAN 231
Cdd:PRK10361 90 MEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHT 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 232 LETEIKRVLEIGLSMSQDAQNLTTALKGNNKVAGNWGEVQLESALQMAGLLSGEHYLAQASYRDDEGRRFAPDFVVKLPD 311
Cdd:PRK10361 170 LAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIVRLPQ 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 312 NKHLILDSKVSLVAYDQAVRSEDNFAIQKALDDHCRSLRNHIDGLSKKNYSRLIGIKSPDFVLMFIPIEPAYIEAMKHDP 391
Cdd:PRK10361 250 GKDVVIDAKMTLVAYERYFNAEDDYTRESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQP 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 392 QLFNYGYERNVILVSHTTLMPILRTVANLWRIERGNVEAREISEKAGDIYNQVCVIAERLTKLGNTLSTASNQYNQTVTS 471
Cdd:PRK10361 330 ELITEALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKK 409
|
410
....*....|....*...
gi 1524679626 472 LV-GKQGLVGKVERFQQL 488
Cdd:PRK10361 410 LSsGRGNVLAQAEAFRGL 427
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
30-284 |
5.32e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 5.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 30 KNSLAQFEQKYEQLSNEKNQLEQIAIQQQTRAESTLERLTERNNHIAYLQQKITHAEEQENQLEEHINHLQERIGSAQAK 109
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 110 ADSLNQQLNISRHQFELKENENQELYSKLSEVQQELMKLRTTLSEKQENFEQQQQNFLDMRQQ---LNAEFQHLAQQILD 186
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAaaeLAAQLEELEEAEEA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 187 EKS-KSFAQTNQSALDMLLKPFKEQIEGFQKRVNEVHTEAVKGNANLETEIKRVLEIGLSMSQDAQNLTTALKGNNKVAG 265
Cdd:COG1196 412 LLErLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
250
....*....|....*....
gi 1524679626 266 NwGEVQLESALQMAGLLSG 284
Cdd:COG1196 492 R-LLLLLEAEADYEGFLEG 509
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
33-364 |
1.55e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 33 LAQFEQKYEQLSNEKNQLEQIAIQQQTRAESTLERLTERNNHIAYLQQKITHAEEQENQLEEHINHLQERIGSAQAKADS 112
Cdd:COG1196 241 LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 113 LNQQLNISRHQFELKENENQELYSKLSEVQQELMKLRTTLSEKQENFEQQQQNFLDMRQQL----NAEFQHLAQQILDEK 188
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELeelaEELLEALRAAAELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 189 SKSFAQTNQSALDMLLKPFKEQIEGFQKRVNEVHTEAVKGNANLETEIKRVLEIGLSMSQDAQNLTTALKGNNKvagnwG 268
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL-----L 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 269 EVQLESALQMAGLLSGEHYLAQASYRDDEGRRFAPDFVVKLPDNKHLILDSKVSL---VAYDQAVRSEDNFAIQKALDDH 345
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveAAYEAALEAALAAALQNIVVED 555
|
330
....*....|....*....
gi 1524679626 346 CRSLRNHIDGLSKKNYSRL 364
Cdd:COG1196 556 DEVAAAAIEYLKAAKAGRA 574
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
26-217 |
2.18e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 2.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 26 QSRDKNSLAQFEQKYEQLSNEKNQLEQIAIQQQTRAESTLERLTERNNHIAYLQQKITHAEEQENQLEEHINHLQERIGS 105
Cdd:TIGR02168 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 106 AQAKADSLNQQLNISRHQFELKENENQELYSKLSEVQQELMKLRTTLSEkqenfEQQQQNFLDMRQQLNAEFQHLAQQIL 185
Cdd:TIGR02168 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER-----LEARLERLEDRRERLQQEIEELLKKL 430
|
170 180 190
....*....|....*....|....*....|..
gi 1524679626 186 DEKSKSFAQTNQSALDMLLKPFKEQIEGFQKR 217
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEELERLEEA 462
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
28-233 |
5.29e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 5.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 28 RDKNSLAQFEQKYEQLSNEKNQLEQIAIQQQTRAESTLERLTERNNHIAYLQQKITHAEEQENQLEEHINHLQERIGSAQ 107
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 108 AKADSL-------NQQLNISRHQFELKENENQELYSKLSEVQQELMKLRTTLSEkqenfeqqqqnfLDMR-QQLNAEFQH 179
Cdd:TIGR02168 873 SELEALlneraslEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQ------------LELRlEGLEVRIDN 940
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1524679626 180 LAQQILDEKSKSF--AQTNQSALDMLLKPFKEQIEGFQKRVNEVhteavkGNANLE 233
Cdd:TIGR02168 941 LQERLSEEYSLTLeeAEALENKIEDDEEEARRRLKRLENKIKEL------GPVNLA 990
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
27-153 |
2.16e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 2.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 27 SRDKnsLAQFEQKYEQLSNEKNQLEqiaiQQQTRAESTLERLTERnnhIAYLQQKITHAEEQENQLEEHINHLQERIGSA 106
Cdd:TIGR02169 383 TRDE--LKDYREKLEKLKREINELK----RELDRLQEELQRLSEE---LADLNAAIAGIEAKINELEEEKEDKALEIKKQ 453
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1524679626 107 QAKADSLNQQLNISRHQFELKENENQELYSKLSEVQQELMKLRTTLS 153
Cdd:TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
14-239 |
2.33e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 14 VLICAVIFLIILQSRdKNSLAQFEQKYEQLSNEKNQLEQIAIQQQTRAESTLERLTERNNHIAYLQQKITHAEEQENQLE 93
Cdd:COG4942 4 LLLLALLLALAAAAQ-ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 94 EHINHLQERIGSAQAKADSLNQQL-----------NISRHQFELKENENQELYSK---LSEVQQELMKLRTTLSEKQENF 159
Cdd:COG4942 83 AELAELEKEIAELRAELEAQKEELaellralyrlgRQPPLALLLSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 160 EQQQQNFLDMRQQLNAEFQHLAQQildeksKSFAQTNQSALDMLLKPFKEQIEGFQKRVNEVHTEAvkgnANLETEIKRV 239
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEE------RAALEALKAERQKLLARLEKELAELAAELAELQQEA----EELEALIARL 232
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
37-239 |
2.58e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 2.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 37 EQKYEQLSNEKNQLEQiaiqqqtRAESTLERLTERNNHIAYLQQKITHAEEQENQLEEHINHLQERIGSAQAKADSLNQQ 116
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQ-------EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEAR 787
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 117 LniSRHQFELKENENQELYSKLSEVQQELMKLRTTLSEKQENfeqqqqnfldmRQQLNAEFQHLAQQI--LDEKSKSFAQ 194
Cdd:TIGR02169 788 L--SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLE-----------KEYLEKEIQELQEQRidLKEQIKSIEK 854
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1524679626 195 TnQSALDMLLKPFKEQIEGFQKRVNEVHTEAvkgnANLETEIKRV 239
Cdd:TIGR02169 855 E-IENLNGKKEELEEELEELEAALRDLESRL----GDLKKERDEL 894
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
35-221 |
1.01e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 35 QFEQKYEQLSNEKNQLE-QIAIQQQ--TRAESTLERLTERNNHIAyLQQKITHAEEQENQLEEHINHLQERIGSAQAKAD 111
Cdd:COG3206 165 NLELRREEARKALEFLEeQLPELRKelEEAEAALEEFRQKNGLVD-LSEEAKLLLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 112 SLNQQLNISRHQF-ELKENEN-QELYSKLSEVQQELMKLRTTLSEKQENFEQQQqnflDMRQQLNAEFQHLAQQILDEks 189
Cdd:COG3206 244 ALRAQLGSGPDALpELLQSPViQQLRAQLAELEAELAELSARYTPNHPDVIALR----AQIAALRAQLQQEAQRILAS-- 317
|
170 180 190
....*....|....*....|....*....|..
gi 1524679626 190 ksfAQTNQSALDMLLKPFKEQIEGFQKRVNEV 221
Cdd:COG3206 318 ---LEAELEALQAREASLQAQLAQLEARLAEL 346
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
25-326 |
1.40e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 47.20 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 25 LQSRDKNSLAQFEQKYEQLSNEKNQLEQIaiqqQTRAESTLERLTERNNHIAYLQQKITHAEEQENQLEEHINHLQERIG 104
Cdd:COG4372 50 LREELEQAREELEQLEEELEQARSELEQL----EEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQ 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 105 SAQAKADSLNQQLNISRHQFELKENENQELYSKLSEVQQELMKLRTTLSE--------------------KQENFEQQQQ 164
Cdd:COG4372 126 DLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQAlseaeaeqaldellkeanrnAEKEEELAEA 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 165 NFLDMRQQLNAEFQHLAQQILDEKSKSFAQTNQSALDMLLKPFKEQIEGFQKRVNEVHTEAVKGNANLETEIKRVLEIGL 244
Cdd:COG4372 206 EKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALEL 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 245 SMSQDAQNLTTALKGNNKVAGNWGEVQLESALQMAGLLSGEHYLAQASYRDDEGRRFAPDFVVKLPDNKHLILDSKVSLV 324
Cdd:COG4372 286 EALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLSKGAEA 365
|
..
gi 1524679626 325 AY 326
Cdd:COG4372 366 GV 367
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
30-155 |
2.06e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 2.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 30 KNSLAQFEQKYEQLSNEKNQLEQIAIQQQTRAESTLERLTERNNHIAY--LQQKITHAEEQENQLEEHINHLQERIGSAQ 107
Cdd:COG1579 44 EARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYeaLQKEIESLKRRISDLEDEILELMERIEELE 123
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1524679626 108 AKADSLNQQLNISRHQFELKENENQELYSKLSEVQQELMKLRTTLSEK 155
Cdd:COG1579 124 EELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
39-294 |
1.31e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 39 KYEQLSNEKNQLEQiaiqQQTRAESTLERLTERnnhIAYLQQKITHAEEQENQLEEHINHLQERIGSAQAKADSLNQQLN 118
Cdd:TIGR02168 233 RLEELREELEELQE----ELKEAEEELEELTAE---LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 119 ISRHQFELKENENQELYSKLSEVQQELMKLRTTLSEKQENFEQQQQNFLDMRQQLNAE----------FQHLAQQILDEK 188
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELeaeleelesrLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 189 SKSFAQTNQSALDML-LKPFKEQIEGFQKRVNEVHTEAVKGNANLETeiKRVLEIGLSMSQDAQNLTTALKGNNKVAGNW 267
Cdd:TIGR02168 386 SKVAQLELQIASLNNeIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEAL 463
|
250 260
....*....|....*....|....*..
gi 1524679626 268 GEVQLESALQMAGLLSGEHYLAQASYR 294
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQAR 490
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
33-184 |
2.60e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 33 LAQFEQKYEQLSNEKNQLEQIAIQQQTRAESTLERLTERNNHIAYLQQKITHAEEQENQLEEHINHLQERIGSAQ----- 107
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEkllql 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 108 ----AKADSLNQQLNISRHQFE---LKENENQELYSKLSEVQQELMKLRTTLSEKQENFEQQQQNFLdmrQQLNAEFQHL 180
Cdd:COG4717 128 lplyQELEALEAELAELPERLEeleERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEEL---QDLAEELEEL 204
|
....
gi 1524679626 181 AQQI 184
Cdd:COG4717 205 QQRL 208
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
37-184 |
2.88e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 37 EQKYEQLSNEKNQLEQIAIQQQTRAESTLERLTERNNHIAYLQQKI-THAEEQENQLEEHINHLQERIGSAQAKADSLNQ 115
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIrGNGGDRLEQLEREIERLERELEERERRRARLEA 366
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1524679626 116 QLnisrHQFELKENENQElysKLSEVQQELMKLRTTLSEKQENFEQQQQNFLDMRQQLNAEFQHLAQQI 184
Cdd:COG4913 367 LL----AALGLPLPASAE---EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEI 428
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
62-154 |
3.27e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 3.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 62 ESTLERL-TERNNHIAYLQQKitHAEEQENQLEEH---INHLQERIGSAQAKADSLNQQLNISRHQfelKENENQELYSK 137
Cdd:pfam15921 244 EDQLEALkSESQNKIELLLQQ--HQDRIEQLISEHeveITGLTEKASSARSQANSIQSQLEIIQEQ---ARNQNSMYMRQ 318
|
90
....*....|....*..
gi 1524679626 138 LSEVQQELMKLRTTLSE 154
Cdd:pfam15921 319 LSDLESTVSQLRSELRE 335
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
44-224 |
4.02e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 44 SNEKNQLEQIAIQQQTRAESTLERLTERNNHIAYLQQKITHAEEQENQLEEHINHLQERIGSAQAKADSLNQQLNISRHQ 123
Cdd:TIGR02169 659 SRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKER 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 124 FELKENENQELYSKLSEVQQELMKLRTTLSEKQENFEQqqqnfldMRQQLNAEFQHLAQQILDEKSKSFaqtnqSALDML 203
Cdd:TIGR02169 739 LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHK-------LEEALNDLEARLSHSRIPEIQAEL-----SKLEEE 806
|
170 180
....*....|....*....|.
gi 1524679626 204 LKPFKEQIEGFQKRVNEVHTE 224
Cdd:TIGR02169 807 VSRIEARLREIEQKLNRLTLE 827
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
47-258 |
4.06e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 4.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 47 KNQLEQIAIQ-------QQTRAESTLERLTERNNHIAYLQQKITHAEEQENQLEEHINHLQERIGSAQAKADSLNQQLNI 119
Cdd:COG1196 199 ERQLEPLERQaekaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 120 SRHQFELKENENQELYSKLSEVQQELMKLRTTLSEkqenfeqqqqnFLDMRQQLNAEFQHLAQQI-LDEKSKSFAQTNQS 198
Cdd:COG1196 279 LELELEEAQAEEYELLAELARLEQDIARLEERRRE-----------LEERLEELEEELAELEEELeELEEELEELEEELE 347
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 199 ALDMLLKPFKEQIEGFQKRVNEVHTEAVKGNANLETEIKRVLEIGLSMSQDAQNLTTALK 258
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
8-148 |
4.13e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.84 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 8 LYLTLIVLICAVIFLII----LQSRDKNSLAQFEQKYEQ-LSNEKNQLEqiAIQQQTRAESTLERLTERNNHIAYLQQKI 82
Cdd:PRK12704 4 LIIILIALVALVVGAVIgyfvRKKIAEAKIKEAEEEAKRiLEEAKKEAE--AIKKEALLEAKEEIHKLRNEFEKELRERR 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1524679626 83 THAEEQENQL---EEHINHLQERIGSAQAKADSLNQQLNISRHQFELKENENQELYSKLSEVQQELMKL 148
Cdd:PRK12704 82 NELQKLEKRLlqkEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGL 150
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
33-146 |
4.70e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 4.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 33 LAQFEQKYEQLSNEKNQLEQI------------AIQQQTRAESTLERLTERNNHIAYLQQKITHAEEQENQLEEHINHLQ 100
Cdd:COG4913 633 LEALEAELDALQERREALQRLaeyswdeidvasAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELK 712
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1524679626 101 ERIGSAQAKADSLNQQLNISRHQFE-LKENENQELYSKLSEVQQELM 146
Cdd:COG4913 713 GEIGRLEKELEQAEEELDELQDRLEaAEDLARLELRALLEERFAAAL 759
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
68-248 |
8.63e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 8.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 68 LTERNNHIAYLQQKITHAEEQENQLEEHIN-------HLQERIGSAQAKADSLNQQLNISRHQFELKENENQELYSKLSE 140
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAelrkeleELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 141 VQQELMKL---RTTLSEKQENFEQQQQNFLDMRQQLNAEFQHLAQQI------LDEKSKSFAQTNQSALDMLLKpfkeqI 211
Cdd:TIGR02168 752 LSKELTELeaeIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELkalreaLDELRAELTLLNEEAANLRER-----L 826
|
170 180 190
....*....|....*....|....*....|....*..
gi 1524679626 212 EGFQKRVNEVHTEAVKGNANLETEIKRVLEIGLSMSQ 248
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
33-233 |
1.29e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 33 LAQFEQKYEQLSNEKNQLEQIAIQQQTRAESTLERLTERNNHIAYLQQKITHAEEQENQLEEHINHLQERIGSAQAKADS 112
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE 807
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 113 LNQQLNISRHQFELKENENQELYSKLSEVQQELMKLRTTLSEKQENFEQQQQNFLDMRQQLNAefqhlAQQILDEKSKSF 192
Cdd:TIGR02168 808 LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE-----LESELEALLNER 882
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1524679626 193 AQTNQsaldmLLKPFKEQIEGFQKRVNEVHTEAVKGNANLE 233
Cdd:TIGR02168 883 ASLEE-----ALALLRSELEELSEELRELESKRSELRRELE 918
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
22-130 |
1.34e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 22 LIILQSRDKNSLAQFEQkYEQLSNEKNQLEQIAIQQQTRAESTLERLTERN-NHIAYLQQKITHAEEQENQLEEHINHLQ 100
Cdd:COG4717 141 LAELPERLEELEERLEE-LRELEEELEELEAELAELQEELEELLEQLSLATeEELQDLAEELEELQQRLAELEEELEEAQ 219
|
90 100 110
....*....|....*....|....*....|
gi 1524679626 101 ERIGSAQAKADSLNQQLNISRHQFELKENE 130
Cdd:COG4717 220 EELEELEEELEQLENELEAAALEERLKEAR 249
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
79-262 |
1.58e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 79 QQKITHAEEQENQLEEHINHLQERIGSAQAKADSLNQQLNISRHQFELKENEN--QELYSKLSEVQQELMKLRTTLSEkq 156
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLDASSDD-- 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 157 enfeqqqQNFLDMR-QQLNAEFQHLAQQILDeksksfAQTNQSALDMLLKPFKEQIEGFQKRVNEVHTEAVKG-NANLET 234
Cdd:COG4913 687 -------LAALEEQlEELEAELEELEEELDE------LKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElRALLEE 753
|
170 180
....*....|....*....|....*...
gi 1524679626 235 EIKRVLEIGlSMSQDAQNLTTALKGNNK 262
Cdd:COG4913 754 RFAAALGDA-VERELRENLEERIDALRA 780
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
24-134 |
2.40e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 24 ILQSRDKNSLAQFEQKYEQLSNEKNQLEQIA-IQQQTRAESTLERLTERNNHIAYLQQKITHAEEQENQLEEHINHLQER 102
Cdd:COG4717 375 LLAEAGVEDEEELRAALEQAEEYQELKEELEeLEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREE 454
|
90 100 110
....*....|....*....|....*....|....
gi 1524679626 103 IGSAQAKADSLNQQLNIS--RHQFELKENENQEL 134
Cdd:COG4717 455 LAELEAELEQLEEDGELAelLQELEELKAELREL 488
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
30-255 |
5.26e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 39.62 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 30 KNSLAQFEqkyEQLSNEKNQLEQIAiQQQTRAESTLERLTERNNHIAYLQQKITHAEEQENQLEEHINHLQERIGSAQAK 109
Cdd:TIGR04523 172 ENELNLLE---KEKLNIQKNIDKIK-NKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 110 ADSLNQQLNISRhqfelkeNENQELYSKLSEVQQELMKLRTTLSEKQENFEQQQQNFLDMRQQLNAEFQHLAQQILD--E 187
Cdd:TIGR04523 248 ISNTQTQLNQLK-------DEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKnqE 320
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1524679626 188 KSKSFAQTNQSALDMLLKPFKEQIEGFQKRVNEVHTEAVKGNANLE---TEIKRVLEIGLSMSQDAQNLTT 255
Cdd:TIGR04523 321 KKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEekqNEIEKLKKENQSYKQEIKNLES 391
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
34-212 |
6.17e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 39.67 E-value: 6.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 34 AQFEQKYEQLSNEKNQLEQI----------AIQQQTRA-ESTLERLTERNNHIaylQQKITHAEEQENQLEEHINHLQER 102
Cdd:TIGR02169 765 ARIEELEEDLHKLEEALNDLearlshsripEIQAELSKlEEEVSRIEARLREI---EQKLNRLTLEKEYLEKEIQELQEQ 841
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 103 IGSAQAKADSLNQQLNISRHQFELKENENQELYSKLSEVQQELMKLRTTLSEKQENFEQQQQNfldmRQQLNAEFQHLAQ 182
Cdd:TIGR02169 842 RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK----IEELEAQIEKKRK 917
|
170 180 190
....*....|....*....|....*....|
gi 1524679626 183 QILDEKSKsfAQTNQSALDMLLKPFKEQIE 212
Cdd:TIGR02169 918 RLSELKAK--LEALEEELSEIEDPKGEDEE 945
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
12-147 |
8.68e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 38.66 E-value: 8.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 12 LIVLICAVIFLIILQSRdknslaqFEQKYEQLSNEKNQLEQIAIQQQTR----------AESTLERLTER-----NNHIA 76
Cdd:PRK04778 10 VVIIIIAYLAGLILRKR-------NYKRIDELEERKQELENLPVNDELEkvkklnltgqSEEKFEEWRQKwdeivTNSLP 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1524679626 77 YLQQKITHAEEQENQL-----EEHINHLQERIGSAQAKADSLNQQLNisrhqfELKENE--NQELYSKLSEVQQELMK 147
Cdd:PRK04778 83 DIEEQLFEAEELNDKFrfrkaKHEINEIESLLDLIEEDIEQILEELQ------ELLESEekNREEVEQLKDLYRELRK 154
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
26-204 |
9.84e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 38.60 E-value: 9.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 26 QSRDKNSLAQFEQKYEQLSNEKNQLEqiaiQQQTRAESTLERLTERNNHIAYLQQKITHAEEQEnQLEEHINHLQERIGS 105
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELE----EELEELEAELEELREELEKLEKLLQLLPLYQELE-ALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524679626 106 AQAKADSLNQQLNISRHQFELKENENQELYSKLSEVQQELMKLRTTLSEKQENFEQQQQNFLDMRQQLNAEFQHLAQQIL 185
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170
....*....|....*....
gi 1524679626 186 DEKSKSFAQTNQSALDMLL 204
Cdd:COG4717 231 QLENELEAAALEERLKEAR 249
|
|
| |
