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Conserved domains on  [gi|1538632118|ref|WP_125552306|]
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MULTISPECIES: DUF961 family protein [Lactobacillaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF961 super family cl05582
Bacterial protein of unknown function (DUF961); This family consists of several hypothetical ...
 13-103 7.68e-27

Bacterial protein of unknown function (DUF961); This family consists of several hypothetical bacterial proteins of unknown function.


The actual alignment was detected with superfamily member pfam06125:

Pssm-ID: 461834  Cd Length: 96  Bit Score: 94.73  E-value: 7.68e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1538632118  13 TFGNLTFGSE----KSENREGGRNGKIISHTYNLYSDLQrADNIEVTIPAESGDKKltIEKEARIQLINPRVSAVGYRIG 88
Cdd:pfam06125   5 TFGTLKFAGErrevRVENEDGNRRTEVKSRSYNLYSSVQ-GDDIQVSIPAEAGEKE--FPYNAEVKLVNPKIDAVGNAIN 81

                          90
                  ....*....|....*
gi 1538632118  89 DQAFTNYTCNADDII 103
Cdd:pfam06125  82 GRGFVDWKLKADDIV 96
 
Name Accession Description Interval E-value
DUF961 pfam06125
Bacterial protein of unknown function (DUF961); This family consists of several hypothetical ...
 13-103 7.68e-27

Bacterial protein of unknown function (DUF961); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 461834  Cd Length: 96  Bit Score: 94.73  E-value: 7.68e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1538632118  13 TFGNLTFGSE----KSENREGGRNGKIISHTYNLYSDLQrADNIEVTIPAESGDKKltIEKEARIQLINPRVSAVGYRIG 88
Cdd:pfam06125   5 TFGTLKFAGErrevRVENEDGNRRTEVKSRSYNLYSSVQ-GDDIQVSIPAEAGEKE--FPYNAEVKLVNPKIDAVGNAIN 81

                          90
                  ....*....|....*
gi 1538632118  89 DQAFTNYTCNADDII 103
Cdd:pfam06125  82 GRGFVDWKLKADDIV 96
 
Name Accession Description Interval E-value
DUF961 pfam06125
Bacterial protein of unknown function (DUF961); This family consists of several hypothetical ...
 13-103 7.68e-27

Bacterial protein of unknown function (DUF961); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 461834  Cd Length: 96  Bit Score: 94.73  E-value: 7.68e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1538632118  13 TFGNLTFGSE----KSENREGGRNGKIISHTYNLYSDLQrADNIEVTIPAESGDKKltIEKEARIQLINPRVSAVGYRIG 88
Cdd:pfam06125   5 TFGTLKFAGErrevRVENEDGNRRTEVKSRSYNLYSSVQ-GDDIQVSIPAEAGEKE--FPYNAEVKLVNPKIDAVGNAIN 81

                          90
                  ....*....|....*
gi 1538632118  89 DQAFTNYTCNADDII 103
Cdd:pfam06125  82 GRGFVDWKLKADDIV 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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