|
Name |
Accession |
Description |
Interval |
E-value |
| PRK07225 |
PRK07225 |
DNA-directed RNA polymerase subunit B'; Validated |
3-608 |
0e+00 |
|
DNA-directed RNA polymerase subunit B'; Validated
Pssm-ID: 235972 [Multi-domain] Cd Length: 605 Bit Score: 1274.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 3 QGREAKVYVNGSLVGTHPDPEQLAEQVRHARRRGDVSEMVNVSVKERTREVIINADAGRARRPLLVVEDGKPLATEEEVE 82
Cdd:PRK07225 1 MMRKAKVYVNGKLIGTHDDPEELVEEIREARRSGEISEEVNVSYKEETNEVIINTDAGRARRPLIVVENGEPLLTEEHIE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 83 ALKNGDLDFDDLVERGKVEFIDAEEEEDIYVAVDEDDLSEDHTHLEVDPQLIFGIGAGMVPYPEHNASPRITMGSGMIKQ 162
Cdd:PRK07225 81 KLKNGELTFDDLVKQGVIEYLDAEEEENAYIAVYEEDLTEEHTHLEIDPSLILGIGAGMIPYPEHNASPRITMGAGMIKQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 163 SLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGYDDRPAAQNFTVAVMSYEGFNIEDALVLNAGSVDRALARSHFF 242
Cdd:PRK07225 161 SLGLPAANYKLRPDTRGHLLHYPQVPLVKTQTQEIIGFDERPAGQNFVVAVMSYEGYNIEDALIMNKASIERGLGRSHFF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 243 RTYEGEERRYPGGQEDRFEIPSDDVRGARGEDAYTHLDDDGLVNPETRVDESSVLLGKTSPPRFLEEPDDMGgLSPQKRR 322
Cdd:PRK07225 241 RTYEGEERRYPGGQEDRFEIPDKDVRGYRGEEAYRHLDEDGLVNPETEVKEGDVLIGKTSPPRFLEEPDDFG-ISPEKRR 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 323 ETSVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVVGHIAPQEDMPFTEQGVVPDLIINPH 402
Cdd:PRK07225 320 ETSVTMRSGEEGIVDTVILTETEEGSRLVKVRVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPFTESGVVPDLIINPH 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 403 ALPSRMTVGHVLEMIGGKVGALEGRRVDGTPFTGEDEDELRGGLEEQGFKSSGKEIMYSGVTGEKIEAEIFIGTIFYQKL 482
Cdd:PRK07225 400 AIPSRMTVGHVLEMIGGKVGSLEGRRVDGTAFSGEDEEDLREALEKLGFEHTGKEVMYDGITGEKIEAEIFVGVIYYQKL 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 483 YHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAALTLKERLLDESDREWIYVCANCGMSAVENVE 562
Cdd:PRK07225 480 HHMVANKLHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMLLKERLLDESDKVEIYVCAKCGMIAIYDKK 559
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1561178664 563 QNRVYCPNCDEETDIHEIEMSYAFKLLLDEMKALGIAPRLELEDAV 608
Cdd:PRK07225 560 RNRKYCPICGEETDIYPVEMSYAFKLLLDELKSLGIAPRLELEDKV 605
|
|
| rpoB_arch |
TIGR03670 |
DNA-directed RNA polymerase subunit B; This model represents the archaeal version of ... |
9-608 |
0e+00 |
|
DNA-directed RNA polymerase subunit B; This model represents the archaeal version of DNA-directed RNA polymerase subunit B (rpoB) and is observed in all archaeal genomes.
Pssm-ID: 274713 [Multi-domain] Cd Length: 599 Bit Score: 1114.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 9 VYVNGSLVGTHPDPEQLAEQVRHARRRGDVSEMVNVSVKERTREVIINADAGRARRPLLVVEDGKPLATEEEVEALKNGD 88
Cdd:TIGR03670 1 VYLNGRLIGYHDDPEELVEEVRKLRRSGKLSQEVNVAYYEETNEVYINCDAGRIRRPLIVVENGKPKLTREHVEKLKEGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 89 LDFDDLVERGKVEFIDAEEEEDIYVAVDEDDLSEDHTHLEVDPQLIFGIGAGMVPYPEHNASPRITMGSGMIKQSLGLPA 168
Cdd:TIGR03670 81 LTWDDLVKQGVIEYLDAEEEENAYIALDPEELTPEHTHLEIDPSAILGIIASTIPYPEHNQSPRNTMGAAMAKQSLGLYA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 169 ANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGYDDRPAAQNFTVAVMSYEGFNIEDALVLNAGSVDRALARSHFFRTYEGE 248
Cdd:TIGR03670 161 ANYRIRLDTRGHLLHYPQKPLVKTRVLELIGYDDRPAGQNFVVAVMSYEGYNIEDALIMNKASIERGLARSTFFRTYEAE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 249 ERRYPGGQEDRFEIPSDDVRGARGEDAYTHLDDDGLVNPETRVDESSVLLGKTSPPRFLEEPDDMGgLSPQKRRETSVTM 328
Cdd:TIGR03670 241 ERRYPGGQEDRFEIPEPDVRGYRGEEAYKHLDEDGIVYPEVEVKGGDVLIGKTSPPRFLEELREFG-LVTERRRDTSVTV 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 329 RSGESGIVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVVGHIAPQEDMPFTEQGVVPDLIINPHALPSRM 408
Cdd:TIGR03670 320 RHGEKGIVDKVIITETEEGNKLVKVRVRDLRIPELGDKFASRHGQKGVIGMIVPQEDMPFTEDGIVPDLIINPHAIPSRM 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 409 TVGHVLEMIGGKVGALEGRRVDGTPFTGEDEDELRGGLEEQGFKSSGKEIMYSGVTGEKIEAEIFIGTIFYQKLYHMVSN 488
Cdd:TIGR03670 400 TVGQLLEMIAGKVAALEGRRVDGTPFEGEPEEELRKELLKLGFKPDGKEVMYDGITGEKLEAEIFIGVIYYQKLHHMVAD 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 489 KLHARSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAALTLKERLLDESDREWIYVCANCGMSAVENVEQNRVYC 568
Cdd:TIGR03670 480 KIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMLLKERLLDESDKYVVYVCENCGHIAWEDKRKGTAYC 559
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1561178664 569 PNCDEETDIHEIEMSYAFKLLLDEMKALGIAPRLELEDAV 608
Cdd:TIGR03670 560 PVCGETGDISPVEMSYAFKLLLDELKSLGISPRLELGDKV 599
|
|
| RNA_pol_B_RPB2 |
cd00653 |
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ... |
120-603 |
0e+00 |
|
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.
Pssm-ID: 238353 [Multi-domain] Cd Length: 866 Bit Score: 672.74 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 120 LSEDHTHLEVDPQLIFGIGAGMVPYPEHNASPRITMGSGMIKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIG 199
Cdd:cd00653 391 VEKEVTHIEISPSQILSVAASLIPFPEHNQSPRNLYQSNMQKQAVGTPALNQQYRMDTKLYLLLYPQKPLVGTGIEEYIA 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 200 YDDRPAAQNFTVAVMSYEGFNIEDALVLNAGSVDRALARSHFFRTYEGEERRYPGGQEDRFEIPSDDVRgargEDAYTHL 279
Cdd:cd00653 471 FGELPLGQNAIVAVMSYSGYNFEDAIIINKSSVDRGFFRSIHYKKYEIELRKTKNGPEEITRGDIPNVS----EEKLKNL 546
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 280 DDDGLVNPETRVDESSVLLGKTSPPRFlEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLMEGE---DGSKLSKVSVR 356
Cdd:cd00653 547 DEDGIIRPGARVEPGDILVGKITPKGE-TESTPIFGEKARDVRDTSLKYPGGEKGIVDDVKIFSRElndGGNKLVKVYIR 625
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 357 DERIPELGDKFASRHGQKGVVGHIAPQEDMPFTEQGVVPDLIINPHALPSRMTVGHVLEMIGGKVGALEGRRVDGTPFTG 436
Cdd:cd00653 626 QKRKPQIGDKFASRHGQKGVISKILPQEDMPFTEDGIPPDIILNPHGFPSRMTIGQLLESLLGKAGALLGKFGDATPFDG 705
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 437 EDEDELRGGLEEQGFKSSGKEIMYSGVTGEKIEAEIFIGTIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLR 516
Cdd:cd00653 706 AEEEDISELLGEAGLNYYGKEVLYDGRTGEPLEAPIFVGPVYYQRLKHMVDDKIHARSTGPYSLLTRQPLKGRSRGGGQR 785
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 517 VGEMERDVLIGHGAALTLKERLLDESDREWIYVCANCGMSAVENveqnrvYCPNCDEETDIHEIEMSYAFKLLLDEMKAL 596
Cdd:cd00653 786 FGEMERDALIAHGAAYLLQERLTIKSDDVVARVCVKCGIILSAN------LCRLCKKGTNISKVGIPYAFKLLFQELQSM 859
|
....*..
gi 1561178664 597 GIAPRLE 603
Cdd:cd00653 860 NIDPRLK 866
|
|
| RpoB |
COG0085 |
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ... |
60-606 |
0e+00 |
|
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 439855 [Multi-domain] Cd Length: 1001 Bit Score: 645.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 60 GRARRPLLVVEDGKplATEEevealkngdldfddlvergkVEFIDAEEEEDIYVAVDEDDLSED---------------- 123
Cdd:COG0085 445 GFIETPYRKVENGK--VTDE--------------------IEYLTADEEENYYIAQANAPLDEDgnfleervlvryrgee 502
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 124 -------HTHLEVDPQLIFGIGAGMVPYPEHNASPRITMGSGMIKQSLGLPAANYRirpdtrqhLLHYPQLSMVKT-QTT 195
Cdd:COG0085 503 vlvppeeVDYMDVSPKQIVSVATSLIPFLEHDDANRALMGANMQRQAVPLLRPEAP--------LLHYPLQKFQRSnQGT 574
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 196 -----------EQIG------------YDDRPAAQNFTVAVMSYEGFNIEDALVLNAGSVDRALARSHFFRTYEGEERRY 252
Cdd:COG0085 575 cinqrpivrvgDRVEkgdvladgpatdNGELALGQNLLVAFMPWEGYNYEDAIIISERLVKDDVLTSIHIEEYEIEARDT 654
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 253 PGGQEDR-FEIPSDdvrgarGEDAYTHLDDDGLVNPETRVDESSVLLGKTSPPRFLEEPDDMG------GLSPQKRRETS 325
Cdd:COG0085 655 KLGPEEItRDIPNV------SEEALRNLDEDGIIRIGAEVKGGDILVGKVTPKGETELTPEERllraifGEKAREVRDTS 728
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 326 VTMRSGESGIVDTVTLMEGEDGSKLS-------KVSVRDERIPELGDKFASRHGQKGVVGHIAPQEDMPFTEQGVVPDLI 398
Cdd:COG0085 729 LRVPHGEKGKVIDVKVFSREEGDELPpgvnklvRVYVAQKRKIEVGDKLAGRHGNKGVISRILPQEDMPFLEDGTPVDIV 808
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 399 INPHALPSRMTVGHVLEMIGGKVGALEGRRVDGTPFTGEDEDELRGGLEEQGFKSSGKEIMYSGVTGEKIEAEIFIGTIF 478
Cdd:COG0085 809 LNPLGVPSRMNVGQVLETHLGWAAALLGRRVATPVFDGAPEEEIRELLEKAGLPPDGKEVLYDGRTGEPFDNPVTVGYMY 888
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 479 YQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAALTLKERLLDESDRewiyvcaNCGMSAV 558
Cdd:COG0085 889 YLKLHHMVDDKIHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQERLTIKSDD-------VCGRVKV 961
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1561178664 559 ENveqNRVycpncdEETDIHEIEMSYAFKLLLDEMKALGIAPRLELED 606
Cdd:COG0085 962 YE---AIV------KGENIPEPGIPESFKVLLKELQSLGLDVEVLSED 1000
|
|
| RNA_pol_Rpb2_6 |
pfam00562 |
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of ... |
139-511 |
1.18e-178 |
|
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain and the wall domain. The hybrid binding domain binds the nascent RNA strand / template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion. This domain is also involved in binding to Rpb1 and Rpb3. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 2 (DRII).
Pssm-ID: 459854 [Multi-domain] Cd Length: 371 Bit Score: 510.15 E-value: 1.18e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 139 AGMVPYPEHNASPRITMGSGMIKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGYDDRPAAQNFTVAVMSYEG 218
Cdd:pfam00562 2 ASLIPFVDHNQSPRNTYQCAMGKQAMGIYTLNKFYRSDQNTYVLCYPQKPLVKTGAVEAGGFGELPLGQNAIVAVMSYTG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 219 FNIEDALVLNAGSVDRALARSHFFRTYEgeERRYPGGQ-EDRFEIPSDDvrgarGEDAYTHLDDDGLVNPETRVDESSVL 297
Cdd:pfam00562 82 YNQEDAIIINKSSVDRGFFTSIHIKEIE--ARKTKLGPiEEITRDIPNV-----SEEALKKLDEDGIVRVGAEVKPGDIL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 298 LGKTSPPRFLEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLME-GEDGSKLSKVSVRDERIPELGDKFASRHGQKGV 376
Cdd:pfam00562 155 VGKVGPTELTKLLRAIFGEKARDVKDTSLKVPPGEEGVVDDVIVFElPPGGIKMVKVYIRQKRKPEVGDKFASRHGQKGV 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 377 VGHIAPQEDMPFTEQGVVPDLIINPHALPSRMTVGHVLEMIGGKVGALEGRRVDGTPFTGEDE--DELRGGLEEQGFKSS 454
Cdd:pfam00562 235 VSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAALLGVFVDATPFDGASTevEDIGELLEKAGYNYY 314
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1561178664 455 GKEIMYSGVTGEKIEAEIFIGTIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAR 511
Cdd:pfam00562 315 GKEVLYDGRTGEPFEAPIFVGPIYYQKLKHMVDDKIHARSTGPYSLLTRQPLGGRAR 371
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK07225 |
PRK07225 |
DNA-directed RNA polymerase subunit B'; Validated |
3-608 |
0e+00 |
|
DNA-directed RNA polymerase subunit B'; Validated
Pssm-ID: 235972 [Multi-domain] Cd Length: 605 Bit Score: 1274.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 3 QGREAKVYVNGSLVGTHPDPEQLAEQVRHARRRGDVSEMVNVSVKERTREVIINADAGRARRPLLVVEDGKPLATEEEVE 82
Cdd:PRK07225 1 MMRKAKVYVNGKLIGTHDDPEELVEEIREARRSGEISEEVNVSYKEETNEVIINTDAGRARRPLIVVENGEPLLTEEHIE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 83 ALKNGDLDFDDLVERGKVEFIDAEEEEDIYVAVDEDDLSEDHTHLEVDPQLIFGIGAGMVPYPEHNASPRITMGSGMIKQ 162
Cdd:PRK07225 81 KLKNGELTFDDLVKQGVIEYLDAEEEENAYIAVYEEDLTEEHTHLEIDPSLILGIGAGMIPYPEHNASPRITMGAGMIKQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 163 SLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGYDDRPAAQNFTVAVMSYEGFNIEDALVLNAGSVDRALARSHFF 242
Cdd:PRK07225 161 SLGLPAANYKLRPDTRGHLLHYPQVPLVKTQTQEIIGFDERPAGQNFVVAVMSYEGYNIEDALIMNKASIERGLGRSHFF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 243 RTYEGEERRYPGGQEDRFEIPSDDVRGARGEDAYTHLDDDGLVNPETRVDESSVLLGKTSPPRFLEEPDDMGgLSPQKRR 322
Cdd:PRK07225 241 RTYEGEERRYPGGQEDRFEIPDKDVRGYRGEEAYRHLDEDGLVNPETEVKEGDVLIGKTSPPRFLEEPDDFG-ISPEKRR 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 323 ETSVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVVGHIAPQEDMPFTEQGVVPDLIINPH 402
Cdd:PRK07225 320 ETSVTMRSGEEGIVDTVILTETEEGSRLVKVRVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPFTESGVVPDLIINPH 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 403 ALPSRMTVGHVLEMIGGKVGALEGRRVDGTPFTGEDEDELRGGLEEQGFKSSGKEIMYSGVTGEKIEAEIFIGTIFYQKL 482
Cdd:PRK07225 400 AIPSRMTVGHVLEMIGGKVGSLEGRRVDGTAFSGEDEEDLREALEKLGFEHTGKEVMYDGITGEKIEAEIFVGVIYYQKL 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 483 YHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAALTLKERLLDESDREWIYVCANCGMSAVENVE 562
Cdd:PRK07225 480 HHMVANKLHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMLLKERLLDESDKVEIYVCAKCGMIAIYDKK 559
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1561178664 563 QNRVYCPNCDEETDIHEIEMSYAFKLLLDEMKALGIAPRLELEDAV 608
Cdd:PRK07225 560 RNRKYCPICGEETDIYPVEMSYAFKLLLDELKSLGIAPRLELEDKV 605
|
|
| rpoB_arch |
TIGR03670 |
DNA-directed RNA polymerase subunit B; This model represents the archaeal version of ... |
9-608 |
0e+00 |
|
DNA-directed RNA polymerase subunit B; This model represents the archaeal version of DNA-directed RNA polymerase subunit B (rpoB) and is observed in all archaeal genomes.
Pssm-ID: 274713 [Multi-domain] Cd Length: 599 Bit Score: 1114.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 9 VYVNGSLVGTHPDPEQLAEQVRHARRRGDVSEMVNVSVKERTREVIINADAGRARRPLLVVEDGKPLATEEEVEALKNGD 88
Cdd:TIGR03670 1 VYLNGRLIGYHDDPEELVEEVRKLRRSGKLSQEVNVAYYEETNEVYINCDAGRIRRPLIVVENGKPKLTREHVEKLKEGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 89 LDFDDLVERGKVEFIDAEEEEDIYVAVDEDDLSEDHTHLEVDPQLIFGIGAGMVPYPEHNASPRITMGSGMIKQSLGLPA 168
Cdd:TIGR03670 81 LTWDDLVKQGVIEYLDAEEEENAYIALDPEELTPEHTHLEIDPSAILGIIASTIPYPEHNQSPRNTMGAAMAKQSLGLYA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 169 ANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGYDDRPAAQNFTVAVMSYEGFNIEDALVLNAGSVDRALARSHFFRTYEGE 248
Cdd:TIGR03670 161 ANYRIRLDTRGHLLHYPQKPLVKTRVLELIGYDDRPAGQNFVVAVMSYEGYNIEDALIMNKASIERGLARSTFFRTYEAE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 249 ERRYPGGQEDRFEIPSDDVRGARGEDAYTHLDDDGLVNPETRVDESSVLLGKTSPPRFLEEPDDMGgLSPQKRRETSVTM 328
Cdd:TIGR03670 241 ERRYPGGQEDRFEIPEPDVRGYRGEEAYKHLDEDGIVYPEVEVKGGDVLIGKTSPPRFLEELREFG-LVTERRRDTSVTV 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 329 RSGESGIVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVVGHIAPQEDMPFTEQGVVPDLIINPHALPSRM 408
Cdd:TIGR03670 320 RHGEKGIVDKVIITETEEGNKLVKVRVRDLRIPELGDKFASRHGQKGVIGMIVPQEDMPFTEDGIVPDLIINPHAIPSRM 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 409 TVGHVLEMIGGKVGALEGRRVDGTPFTGEDEDELRGGLEEQGFKSSGKEIMYSGVTGEKIEAEIFIGTIFYQKLYHMVSN 488
Cdd:TIGR03670 400 TVGQLLEMIAGKVAALEGRRVDGTPFEGEPEEELRKELLKLGFKPDGKEVMYDGITGEKLEAEIFIGVIYYQKLHHMVAD 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 489 KLHARSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAALTLKERLLDESDREWIYVCANCGMSAVENVEQNRVYC 568
Cdd:TIGR03670 480 KIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMLLKERLLDESDKYVVYVCENCGHIAWEDKRKGTAYC 559
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1561178664 569 PNCDEETDIHEIEMSYAFKLLLDEMKALGIAPRLELEDAV 608
Cdd:TIGR03670 560 PVCGETGDISPVEMSYAFKLLLDELKSLGISPRLELGDKV 599
|
|
| PRK08565 |
PRK08565 |
DNA-directed RNA polymerase subunit B; Provisional |
7-608 |
0e+00 |
|
DNA-directed RNA polymerase subunit B; Provisional
Pssm-ID: 236291 [Multi-domain] Cd Length: 1103 Bit Score: 1037.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 7 AKVYVNGSLVGTHPDPEQLAEQVRHARRRGDVSEMVNVSV--KERTREVIINADAGRARRPLLVVEDGKPLATEEEVEAL 84
Cdd:PRK08565 501 SRVYLNGRLIGYHPDGEELAEKIRELRRSGKISDEVNVAYieTGEINEVYVNCDSGRVRRPLIVVENGKPKLTREHVEKL 580
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 85 KNGDLDFDDLVERGKVEFIDAEEEEDIYVAVDEDDLSEDHTHLEVDPQLIFGIGAGMVPYPEHNASPRITMGSGMIKQSL 164
Cdd:PRK08565 581 KKGELTFDDLVKMGVIEYLDAEEEENAYVALDPEDLTPEHTHLEIWPPAILGITASIIPYPEHNQSPRNTYQAAMAKQSL 660
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 165 GLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGYDDRPAAQNFTVAVMSYEGFNIEDALVLNAGSVDRALARSHFFRT 244
Cdd:PRK08565 661 GLYAANFRIRTDTRGHLLHYPQRPLVQTRALEIIGYNDRPAGQNAVVAVLSYTGYNIEDAIIMNKASIERGLARSTFFRT 740
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 245 YEGEERRYPGGQEDRFEIPSDDVRGARGEDAYTHLDDDGLVNPETRVDESSVLLGKTSPPRFLEEPDDMGGLsPQKRRET 324
Cdd:PRK08565 741 YETEERKYPGGQEDKIEIPEPNVRGYRGEEYYRKLDEDGIVSPEVEVKGGDVLIGKTSPPRFLEELEELSLG-LQERRDT 819
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 325 SVTMRSGESGIVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVVGHIAPQEDMPFTEQGVVPDLIINPHAL 404
Cdd:PRK08565 820 SVTVRHGEKGIVDTVLITESPEGNKLVKVRVRDLRIPELGDKFASRHGQKGVIGMLVPQEDMPFTEDGIVPDLIINPHAI 899
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 405 PSRMTVGHVLEMIGGKVGALEGRRVDGTPFTGEDEDELRGGLEEQGFKSSGKEIMYSGVTGEKIEAEIFIGTIFYQKLYH 484
Cdd:PRK08565 900 PSRMTVGQLLESIAGKVAALEGRFVDATPFYGEPEEELRKELLKLGYKPDGTEVMYDGRTGEKIKAPIFIGVVYYQKLHH 979
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 485 MVSNKLHARSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAALTLKERLLDESDREWIYVCANCGMSAVENVEQN 564
Cdd:PRK08565 980 MVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGHGAAMLLKERLLDSSDKTTIYVCELCGHIAWYDRRKN 1059
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1561178664 565 RVYCPNCDEETDIHEIEMSYAFKLLLDEMKALGIAPRLELEDAV 608
Cdd:PRK08565 1060 KYVCPIHGDKGNISPVEVSYAFKLLLQELMSMGISPRLKLGDKV 1103
|
|
| RNA_pol_B_RPB2 |
cd00653 |
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ... |
120-603 |
0e+00 |
|
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.
Pssm-ID: 238353 [Multi-domain] Cd Length: 866 Bit Score: 672.74 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 120 LSEDHTHLEVDPQLIFGIGAGMVPYPEHNASPRITMGSGMIKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIG 199
Cdd:cd00653 391 VEKEVTHIEISPSQILSVAASLIPFPEHNQSPRNLYQSNMQKQAVGTPALNQQYRMDTKLYLLLYPQKPLVGTGIEEYIA 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 200 YDDRPAAQNFTVAVMSYEGFNIEDALVLNAGSVDRALARSHFFRTYEGEERRYPGGQEDRFEIPSDDVRgargEDAYTHL 279
Cdd:cd00653 471 FGELPLGQNAIVAVMSYSGYNFEDAIIINKSSVDRGFFRSIHYKKYEIELRKTKNGPEEITRGDIPNVS----EEKLKNL 546
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 280 DDDGLVNPETRVDESSVLLGKTSPPRFlEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLMEGE---DGSKLSKVSVR 356
Cdd:cd00653 547 DEDGIIRPGARVEPGDILVGKITPKGE-TESTPIFGEKARDVRDTSLKYPGGEKGIVDDVKIFSRElndGGNKLVKVYIR 625
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 357 DERIPELGDKFASRHGQKGVVGHIAPQEDMPFTEQGVVPDLIINPHALPSRMTVGHVLEMIGGKVGALEGRRVDGTPFTG 436
Cdd:cd00653 626 QKRKPQIGDKFASRHGQKGVISKILPQEDMPFTEDGIPPDIILNPHGFPSRMTIGQLLESLLGKAGALLGKFGDATPFDG 705
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 437 EDEDELRGGLEEQGFKSSGKEIMYSGVTGEKIEAEIFIGTIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLR 516
Cdd:cd00653 706 AEEEDISELLGEAGLNYYGKEVLYDGRTGEPLEAPIFVGPVYYQRLKHMVDDKIHARSTGPYSLLTRQPLKGRSRGGGQR 785
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 517 VGEMERDVLIGHGAALTLKERLLDESDREWIYVCANCGMSAVENveqnrvYCPNCDEETDIHEIEMSYAFKLLLDEMKAL 596
Cdd:cd00653 786 FGEMERDALIAHGAAYLLQERLTIKSDDVVARVCVKCGIILSAN------LCRLCKKGTNISKVGIPYAFKLLFQELQSM 859
|
....*..
gi 1561178664 597 GIAPRLE 603
Cdd:cd00653 860 NIDPRLK 866
|
|
| RpoB |
COG0085 |
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ... |
60-606 |
0e+00 |
|
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 439855 [Multi-domain] Cd Length: 1001 Bit Score: 645.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 60 GRARRPLLVVEDGKplATEEevealkngdldfddlvergkVEFIDAEEEEDIYVAVDEDDLSED---------------- 123
Cdd:COG0085 445 GFIETPYRKVENGK--VTDE--------------------IEYLTADEEENYYIAQANAPLDEDgnfleervlvryrgee 502
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 124 -------HTHLEVDPQLIFGIGAGMVPYPEHNASPRITMGSGMIKQSLGLPAANYRirpdtrqhLLHYPQLSMVKT-QTT 195
Cdd:COG0085 503 vlvppeeVDYMDVSPKQIVSVATSLIPFLEHDDANRALMGANMQRQAVPLLRPEAP--------LLHYPLQKFQRSnQGT 574
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 196 -----------EQIG------------YDDRPAAQNFTVAVMSYEGFNIEDALVLNAGSVDRALARSHFFRTYEGEERRY 252
Cdd:COG0085 575 cinqrpivrvgDRVEkgdvladgpatdNGELALGQNLLVAFMPWEGYNYEDAIIISERLVKDDVLTSIHIEEYEIEARDT 654
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 253 PGGQEDR-FEIPSDdvrgarGEDAYTHLDDDGLVNPETRVDESSVLLGKTSPPRFLEEPDDMG------GLSPQKRRETS 325
Cdd:COG0085 655 KLGPEEItRDIPNV------SEEALRNLDEDGIIRIGAEVKGGDILVGKVTPKGETELTPEERllraifGEKAREVRDTS 728
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 326 VTMRSGESGIVDTVTLMEGEDGSKLS-------KVSVRDERIPELGDKFASRHGQKGVVGHIAPQEDMPFTEQGVVPDLI 398
Cdd:COG0085 729 LRVPHGEKGKVIDVKVFSREEGDELPpgvnklvRVYVAQKRKIEVGDKLAGRHGNKGVISRILPQEDMPFLEDGTPVDIV 808
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 399 INPHALPSRMTVGHVLEMIGGKVGALEGRRVDGTPFTGEDEDELRGGLEEQGFKSSGKEIMYSGVTGEKIEAEIFIGTIF 478
Cdd:COG0085 809 LNPLGVPSRMNVGQVLETHLGWAAALLGRRVATPVFDGAPEEEIRELLEKAGLPPDGKEVLYDGRTGEPFDNPVTVGYMY 888
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 479 YQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAALTLKERLLDESDRewiyvcaNCGMSAV 558
Cdd:COG0085 889 YLKLHHMVDDKIHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQERLTIKSDD-------VCGRVKV 961
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1561178664 559 ENveqNRVycpncdEETDIHEIEMSYAFKLLLDEMKALGIAPRLELED 606
Cdd:COG0085 962 YE---AIV------KGENIPEPGIPESFKVLLKELQSLGLDVEVLSED 1000
|
|
| RNA_pol_Rpb2_6 |
pfam00562 |
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of ... |
139-511 |
1.18e-178 |
|
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain and the wall domain. The hybrid binding domain binds the nascent RNA strand / template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion. This domain is also involved in binding to Rpb1 and Rpb3. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 2 (DRII).
Pssm-ID: 459854 [Multi-domain] Cd Length: 371 Bit Score: 510.15 E-value: 1.18e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 139 AGMVPYPEHNASPRITMGSGMIKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGYDDRPAAQNFTVAVMSYEG 218
Cdd:pfam00562 2 ASLIPFVDHNQSPRNTYQCAMGKQAMGIYTLNKFYRSDQNTYVLCYPQKPLVKTGAVEAGGFGELPLGQNAIVAVMSYTG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 219 FNIEDALVLNAGSVDRALARSHFFRTYEgeERRYPGGQ-EDRFEIPSDDvrgarGEDAYTHLDDDGLVNPETRVDESSVL 297
Cdd:pfam00562 82 YNQEDAIIINKSSVDRGFFTSIHIKEIE--ARKTKLGPiEEITRDIPNV-----SEEALKKLDEDGIVRVGAEVKPGDIL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 298 LGKTSPPRFLEEPDDMGGLSPQKRRETSVTMRSGESGIVDTVTLME-GEDGSKLSKVSVRDERIPELGDKFASRHGQKGV 376
Cdd:pfam00562 155 VGKVGPTELTKLLRAIFGEKARDVKDTSLKVPPGEEGVVDDVIVFElPPGGIKMVKVYIRQKRKPEVGDKFASRHGQKGV 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 377 VGHIAPQEDMPFTEQGVVPDLIINPHALPSRMTVGHVLEMIGGKVGALEGRRVDGTPFTGEDE--DELRGGLEEQGFKSS 454
Cdd:pfam00562 235 VSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAALLGVFVDATPFDGASTevEDIGELLEKAGYNYY 314
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1561178664 455 GKEIMYSGVTGEKIEAEIFIGTIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAR 511
Cdd:pfam00562 315 GKEVLYDGRTGEPFEAPIFVGPIYYQKLKHMVDDKIHARSTGPYSLLTRQPLGGRAR 371
|
|
| rpoB |
TIGR02013 |
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit ... |
85-598 |
1.31e-70 |
|
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit. [Transcription, DNA-dependent RNA polymerase]
Pssm-ID: 273928 [Multi-domain] Cd Length: 1065 Bit Score: 246.88 E-value: 1.31e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 85 KNGDLDFDDlvergKVEFIDAEEEEDIYVA-----VDEDD-LSEDH-----------------THLEVDPQLIFGIGAGM 141
Cdd:TIGR02013 471 KDGKVVVTD-----EIDYLTADEEDNYVIAqanapLDENGrFVEDLvvaryrgeitlvspdqvDYMDVSPKQVVSVAASL 545
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 142 VPYPEHNASPRITMGSGMIKQSLGL-----------------------------------PAANYRIRPDTRQHLLHYPQ 186
Cdd:TIGR02013 546 IPFLEHDDANRALMGSNMQRQAVPLlrseaplvgtgmeakvardsgavivakrggvveyvDAKRIVIRYDEDEEEPDGGI 625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 187 L--SMVKTQTTEQ-IGYDDRPA--------------------------AQNFTVAVMSYEGFNIEDALVLNAGSVDRALA 237
Cdd:TIGR02013 626 DiyRLLKYQRSNQdTCINQRPIvsvgdrveagdvladgpstdlgelalGRNVLVAFMPWNGYNYEDAILISERLVKDDVF 705
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 238 RSHFFRTYEGEERRYPGGQEdrfEIPSD--DVrgarGEDAYTHLDDDGLVNPETRVDESSVLLGKTSPPRFLEepddmgg 315
Cdd:TIGR02013 706 TSIHIEEYEVEARDTKLGPE---EITRDipNV----SEEALRNLDENGIVRIGAEVKAGDILVGKVTPKGETE------- 771
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 316 LSPQKR-------------RETSVTMRSGESGIVDTVTLMEGEDG-------SKLSKVSVRDERIPELGDKFASRHGQKG 375
Cdd:TIGR02013 772 LTPEEKllraifgekardvRDTSLRVPPGVEGTVIDVKVFSREQGdelppgvNKLVKVYIAQKRKIQVGDKMAGRHGNKG 851
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 376 VVGHIAPQEDMPFTEQGVVPDLIINPHALPSRMTVGHVLEMIGGKVGALEGRRVD--GTP-FTGEDEDELRGGLEEQGFK 452
Cdd:TIGR02013 852 VVSKILPIEDMPFLEDGTPVDIVLNPLGVPSRMNIGQILETHLGWAGKRLGRKGVpiATPvFDGASEEEIKEYLEKAGLP 931
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 453 SSGKEIMYSGVTGEKIEAEIFIGTIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAAL 532
Cdd:TIGR02013 932 RDGKVRLYDGRTGEQFDRPVTVGYMYMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1011
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 533 TLKERLLDESD----REWIYVCANCGmsavENVeqnrvycpncdEETDIHEiemsyAFKLLLDEMKALGI 598
Cdd:TIGR02013 1012 TLQEMLTVKSDdvvgRTKAYEAIVKG----ENV-----------PEPGIPE-----SFNVLIKELQSLGL 1061
|
|
| rpoB |
PRK00405 |
DNA-directed RNA polymerase subunit beta; Reviewed |
207-607 |
2.63e-58 |
|
DNA-directed RNA polymerase subunit beta; Reviewed
Pssm-ID: 234749 [Multi-domain] Cd Length: 1112 Bit Score: 211.50 E-value: 2.63e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 207 QNFTVAVMSYEGFNIEDALVLNagsvDRaLARSHFFRT-----YEGEERRYPGGQEdrfEIPSD--DVrgarGEDAYTHL 279
Cdd:PRK00405 717 QNVLVAFMPWNGYNFEDAILIS----ER-LVKEDVFTSihieeYEIEARDTKLGPE---EITRDipNV----SEEALRNL 784
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 280 DDDGLVNPETRVDESSVLLGKTSPPRflEEPddmggLSPQKR-------------RETSVTMRSGESGIV-DTVTLMEGE 345
Cdd:PRK00405 785 DESGIVRIGAEVKPGDILVGKVTPKG--ETE-----LTPEEKllraifgekardvKDTSLRVPHGEEGTViDVKVFTRIE 857
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 346 DGS-------KLSKVSVRDERIPELGDKFASRHGQKGVVGHIAPQEDMPFTEQGVVPDLIINPHALPSRMTVGHVLEMIG 418
Cdd:PRK00405 858 QGDelppgvnKLVKVYIAQKRKIQVGDKMAGRHGNKGVVSRILPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQILETHL 937
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 419 GKVGALEGRRVdGTP-FTGEDEDELRGGLEEQGFKSSGKEIMYSGVTGEKIEAEIFIGTIFYQKLYHMVSNKLHARSRGP 497
Cdd:PRK00405 938 GWAAKGLGIKF-ATPvFDGAKEEEIKELLEEAGLPEDGKTTLYDGRTGEPFDRPVTVGYMYMLKLHHLVDDKIHARSTGP 1016
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 498 VQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAALTLKERLLDESDrewiyvcancgmsaveNVE-QNRVYcpncdeE-- 574
Cdd:PRK00405 1017 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----------------DVVgRTKVY------Eai 1074
|
410 420 430
....*....|....*....|....*....|....*.
gi 1561178664 575 ---TDIHEIEMSYAFKLLLDEMKALGIAprLELEDA 607
Cdd:PRK00405 1075 vkgENIPEPGIPESFNVLVKELQSLGLD--VELLDE 1108
|
|
| rpoB |
CHL00207 |
RNA polymerase beta subunit; Provisional |
207-598 |
1.39e-53 |
|
RNA polymerase beta subunit; Provisional
Pssm-ID: 214397 [Multi-domain] Cd Length: 1077 Bit Score: 197.62 E-value: 1.39e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 207 QNFTVAVMSYEGFNIEDALVLNAGSVDRALARSHFFRTYEGEERRYPGGQED-RFEIPSddvrgaRGEDAYTHLDDDGLV 285
Cdd:CHL00207 648 QNVLVAYMPWEGYNFEDAILINKRLVYEDLFTSIHIEKYEIELRQTKLGSEEiTRNIPN------VSEYSLKNLDENGII 721
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 286 NPETRVDESSVLLGKTSPPRFLEEPDD------MGGLSPQKRRETSVTMRSGESG-IVDTVTLMEgEDGSKLS------- 351
Cdd:CHL00207 722 SIGSKVLAGDILVGKITPKGESDQLPEgkllraIFGEKAKDVKDTSLRMPNGGYGrVIKVEIFSR-SKGDELKfgyylki 800
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 352 KVSVRDERIPELGDKFASRHGQKGVVGHIAPQEDMPFTEQGVVPDLIINPHALPSRMTVGHVLEMIGGKVGALEGRRVDG 431
Cdd:CHL00207 801 RVFIAQIRKIQVGDKLAGRHGNKGIISRILPRQDMPYLPDGTPPDIILNPLGVPSRMNVGQLFECLLGLAGDNLNKRFKI 880
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 432 TPFTGEDEDE---------LRGGLEEQGFK------SSGKEIMYSGVTGEKIEAEIFIGTIFYQKLYHMVSNKLHARSRG 496
Cdd:CHL00207 881 LPFDEMYGSEysrilinnkLNQASIKNNEYwlfnsyHPGKMVLRDGRTGYKFKNPVTVGIAYMLKLIHLVDDKIHARTTG 960
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 497 PVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAALTLKERLLDESDrewIYVCANCGMSAVENVEQnrvycpncdeetd 576
Cdd:CHL00207 961 PYSLVTQQPLGGKAQHGGQRFGEMEVWALEAFGAAYTLKELLTIKSD---DMQGRNETLNAIVKGQP------------- 1024
|
410 420
....*....|....*....|..
gi 1561178664 577 IHEIEMSYAFKLLLDEMKALGI 598
Cdd:CHL00207 1025 IPKPGTPESFKVLMRELQSLGL 1046
|
|
| rpoB |
CHL00001 |
RNA polymerase beta subunit |
207-543 |
8.58e-48 |
|
RNA polymerase beta subunit
Pssm-ID: 214330 [Multi-domain] Cd Length: 1070 Bit Score: 180.48 E-value: 8.58e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 207 QNFTVAVMSYEGFNIEDALVLNAGSVDRALARSHFFRTYEGEERRYPGGQEdRF--EIPSDDVRGARgedaytHLDDDGL 284
Cdd:CHL00001 653 KNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPE-RItkEIPHLEAHLLR------NLDKNGI 725
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 285 VNPETRVDESSVLLGKTSP---PRFLEEPDD-----MGGLSPQKRRETSVTMRSGESGIVDTVTLMEGEDGSKLSKVSVR 356
Cdd:CHL00001 726 VMLGSWVETGDILVGKLTPqeaEESSYAPEGrllraIFGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIH 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 357 ----DERIPELGDKFASRHGQKGVVGHIAPQEDMPFTEQGVVPDLIINPHALPSRMTVGHVLEMIGGKVGALEGRRVDGT 432
Cdd:CHL00001 806 vyilQKREIQVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVLNPLGVPSRMNVGQIFECLLGLAGDLLNRHYRIA 885
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 433 PFTGEDEDEL-RGGLEEQGFKSS--------------GKEIMYSGVTGEKIEAEIFIGTIFYQKLYHMVSNKLHARSRGP 497
Cdd:CHL00001 886 PFDERYEQEAsRKLVFSELYEASkqtanpwvfepeypGKSRLFDGRTGDPFEQPVTIGKAYILKLIHQVDDKIHARSSGP 965
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1561178664 498 VQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAALTLKERLLDESD 543
Cdd:CHL00001 966 YALVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAYILQEMLTYKSD 1011
|
|
| RNA_pol_Rpb2_7 |
pfam04560 |
RNA polymerase Rpb2, domain 7; RNA polymerases catalyze the DNA dependent polymerization of ... |
513-605 |
3.57e-38 |
|
RNA polymerase Rpb2, domain 7; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain comprised of the structural domains anchor and clamp. The clamp region (C-terminal) contains a zinc-binding motif. The clamp region is named due to its interaction with the clamp domain found in Rpb1. The domain also contains a region termed "switch 4". The switches within the polymerase are thought to signal different stages of transcription.
Pssm-ID: 461355 [Multi-domain] Cd Length: 87 Bit Score: 135.79 E-value: 3.57e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 513 GGLRVGEMERDVLIGHGAALTLKERLLDESDREWIYVCANCGMSAVENveqnrvYCPNCDEETDIHEIEMSYAFKLLLDE 592
Cdd:pfam04560 1 GGLRFGEMERWALIAYGAAHTLQERLTIKSDAYEVDVCGRCGLYAAYN------KCPICKGETDISPGYIPESFKLLFQE 74
|
90
....*....|...
gi 1561178664 593 MKALGIAPRLELE 605
Cdd:pfam04560 75 LQSLGIDPRLLLE 87
|
|
| PRK09603 |
PRK09603 |
DNA-directed RNA polymerase subunit beta/beta'; |
95-543 |
2.33e-34 |
|
DNA-directed RNA polymerase subunit beta/beta';
Pssm-ID: 181983 [Multi-domain] Cd Length: 2890 Bit Score: 140.06 E-value: 2.33e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 95 VERGKVE----FIDAEEEEDIYVA-----VDEDD----------------LSEDH--THLEVDPQLIFGIGAGMVPYPEH 147
Cdd:PRK09603 608 VVDGKVVgetiYLTAIQEDSHIIApastpIDEEGnilgdlietrvegeivLNEKSkvTLMDLSSSMLVGVAASLIPFLEH 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 148 NASPRITMGSGMIKQSLGL-----------------------------------PAANYRI--RPDTRQHLLHYP----- 185
Cdd:PRK09603 688 DDANRALMGTNMQRQAVPLlrsdapivgtgiekiiardswgaikanragvvekiDSKNIYIlgEGKEEAYIDAYSlqknl 767
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 186 ---------QLSMVKTQTTEQIG--YDDRPA--------AQNFTVAVMSYEGFNIEDALVLNAGSV-DRALARSHFFRTy 245
Cdd:PRK09603 768 rtnqntsfnQVPIVKVGDKVEAGqiIADGPSmdrgelalGKNVRVAFMPWNGYNFEDAIVVSERITkDDIFTSTHIYEK- 846
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 246 EGEERRYPGGQEdrfEIPSD--DVRgargEDAYTHLDDDGLVNPETRVDESSVLLGKTSP-------------------- 303
Cdd:PRK09603 847 EVDARELKHGVE---EFTADipDVK----EEALAHLDESGIVKVGTYVSAGMILVGKTSPkgeikstpeerllraifgdk 919
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 304 ------------PRF-----------------------------------------------------------LEEPDD 312
Cdd:PRK09603 920 aghvvnkslycpPSLegtvidvkvftkkgyekdarvlsayeeekakldmehfdrltmlnreellrvssllsqaiLEEPFS 999
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 313 MGGLSPQK-----RRETSVTMRSGESGIV------------------------------DTVTLMEGED-----GSKLSK 352
Cdd:PRK09603 1000 HNGKDYKEgdqipKEEIASINRFTLASLVkkyskevqnhyeitknnfleqkkvlgeeheEKLSILEKDDilpngVIKKVK 1079
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 353 VSVRDERIPELGDKFASRHGQKGVVGHIAPQEDMPFTEQGVVPDLIINPHALPSRMTVGHVLEMIGGKVGALEGRRV--- 429
Cdd:PRK09603 1080 LYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVGKEFGKQIasm 1159
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 430 ---DGTPFTGE--------------------------DEDELRG-----------------GLEEQGF---------KSS 454
Cdd:PRK09603 1160 ledKTKDFAKElrakmleianainekdpltihalencSDEELLEyakdwskgvkmaipvfeGISQEKFyklfelakiAMD 1239
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 455 GKEIMYSGVTGEKIEAEIFIGTIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGAALTL 534
Cdd:PRK09603 1240 GKMDLYDGRTGEKMRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTL 1319
|
....*....
gi 1561178664 535 KERLLDESD 543
Cdd:PRK09603 1320 KEMLTIKSD 1328
|
|
| PRK14844 |
PRK14844 |
DNA-directed RNA polymerase subunit beta/beta'; |
112-543 |
1.65e-27 |
|
DNA-directed RNA polymerase subunit beta/beta';
Pssm-ID: 173305 [Multi-domain] Cd Length: 2836 Bit Score: 118.96 E-value: 1.65e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 112 YVAVDEDDLSedhtHLEVDPQLIFGIGAGMVPYPEHNASPRITMGSGMIKQSLGL--PAAN------------------- 170
Cdd:PRK14844 663 FVMVSSDQVS----YIDVSPKQVISVAASLIPFLENDDANRALMGSNMQRQAVPLlkPTAPlvatgmesfvasgsgavvl 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 171 --------------------------------YRIRPDTRQH---LLHYPQLSMVKTQTTEQIGYDDRPA--------AQ 207
Cdd:PRK14844 739 akrdgivdssdsnsivirafdkervnyldvdiYHLRKFQRSNhntCINQKPLVCVGDYVKEGDVIADGPAinsgelalGQ 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 208 NFTVAVMSYEGFNIEDALVLNAGSVDRALARSHFFRTYEGEERRYPGGQEDrfeiPSDDVRGARGEDAYtHLDDDGLVNP 287
Cdd:PRK14844 819 NLLVAFMSWQGYNFEDSIIISSEVVKKDLFTSIHIEEFECVVHDTPLGSEK----ITRAIPGVNEENLY-HLDDSGIVKI 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 288 ETRVDESSVLLGKTSPPRFLEEPDDMGGL------------------SP------------------------------- 318
Cdd:PRK14844 894 GTRVGPGYILVGKVTPKPSLSLPPETKLLmtifgeksfdcadsslytSPdvegtvidvqvftrrgveenerallikqkei 973
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 319 -------------------------------QKRRETSVTMRSGESGI----------VDTVT----------------- 340
Cdd:PRK14844 974 ndfekerdyiinvtseyfydelkkllinsgsQDREKFDSIEREQWWGIglknqsiseqVKSLKkdfdekvshaiaqfkrk 1053
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 341 ---LMEGED---GSKLS-KVSVRDERIPELGDKFASRHGQKGVVGHIAPQEDMPFTEQGVVPDLIINPHALPSRMTVGHV 413
Cdd:PRK14844 1054 vekLHEGYDlpqGVSMSvKVFIAVKHSLQPGDKMAGRHGNKGVISRVVPVEDMPYLEDGTPVDIILNPLGVPSRMNVGQI 1133
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 414 LEM--------IGGKVGA-------------------------------LEGRRVD------------GTPFTGEDEDEL 442
Cdd:PRK14844 1134 LEThvgwackkLGEKVGNildeinkiksafckgirslnddnftkfaaayLDNKKIEnidddeitasvlNTPNKNALNDEL 1213
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 443 -----------------------------------------------------RGGL-------------------EEQG 450
Cdd:PRK14844 1214 nelvenylnscksaysnlrnflievyscgsnvsicnnirdisdnnliefarklRDGIpvaapvfegpkdeqiaklfELAG 1293
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561178664 451 FKSSGKEIMYSGVTGEKIEAEIFIGTIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRVGEMERDVLIGHGA 530
Cdd:PRK14844 1294 LDNSGQAVLYDGCSGEKFDRKVTVGYMYMLKLHHLVDGKIHARSVGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGA 1373
|
730
....*....|...
gi 1561178664 531 ALTLKERLLDESD 543
Cdd:PRK14844 1374 AYTLQEMLTVKSD 1386
|
|
| RNA_pol_Rpb2_4 |
pfam04566 |
RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of ... |
9-70 |
3.50e-26 |
|
RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain.
Pssm-ID: 428012 [Multi-domain] Cd Length: 62 Bit Score: 101.29 E-value: 3.50e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1561178664 9 VYVNGSLVGTHPDPEQLAEQVRHARRRGDVSEMVNVSVKERTREVIINADAGRARRPLLVVE 70
Cdd:pfam04566 1 VFLNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE 62
|
|
| RNA_pol_Rpb2_5 |
pfam04567 |
RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of ... |
91-131 |
1.31e-10 |
|
RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain.
Pssm-ID: 428013 [Multi-domain] Cd Length: 53 Bit Score: 56.78 E-value: 1.31e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1561178664 91 FDDLVERGKVEFIDAEEEEDIYVAVDEDDLSED------------HTHLEVDP 131
Cdd:pfam04567 1 WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESsreeregpyahtYTHCEIHP 53
|
|
| |
